Wall clock time and date at job start Sat Apr 11 2020 05:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 120.00045 * 2 1 4 4 H 1.48497 * 109.46847 * 269.99662 * 3 2 1 5 5 H 1.48493 * 109.47164 * 30.00093 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99977 * 3 2 1 7 7 C 1.38950 * 119.99401 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99459 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00380 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99878 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00195 * 359.72970 * 10 9 7 12 12 C 1.50706 * 120.00081 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47182 * 179.72734 * 12 10 9 14 14 C 1.47477 * 111.00081 * 265.96691 * 13 12 10 15 15 C 1.53503 * 87.93674 * 221.29832 * 14 13 12 16 16 N 1.46502 * 114.17188 * 139.67018 * 15 14 13 17 17 C 1.34777 * 119.99942 * 111.15947 * 16 15 14 18 18 O 1.21281 * 120.00105 * 0.02562 * 17 16 15 19 19 C 1.50701 * 119.99991 * 179.97438 * 17 16 15 20 20 N 1.46896 * 109.47144 * 180.02562 * 19 17 16 21 21 C 1.47185 * 111.00125 * 170.00591 * 20 19 17 22 22 C 1.52981 * 108.73110 * 54.36663 * 21 20 19 23 23 N 1.46007 * 110.04312 * 50.29652 * 22 21 20 24 24 C 1.33721 * 122.92525 * 341.84026 * 23 22 21 25 25 O 1.21281 * 118.62789 * 181.69270 * 24 23 22 26 26 C 1.46907 * 111.00171 * 292.89783 * 20 19 17 27 27 C 1.47484 * 110.99756 * 170.00145 * 13 12 10 28 28 H 0.97004 * 120.00112 * 0.02562 * 1 2 3 29 29 H 0.96998 * 119.99597 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.46564 * 299.73030 * 12 10 9 31 31 H 1.08998 * 109.47012 * 59.72084 * 12 10 9 32 32 H 1.09000 * 113.48071 * 336.07220 * 14 13 12 33 33 H 1.09004 * 113.47566 * 106.53029 * 14 13 12 34 34 H 1.09003 * 114.17671 * 272.37856 * 15 14 13 35 35 H 0.96992 * 119.99938 * 291.16113 * 16 15 14 36 36 H 1.08998 * 109.47513 * 300.00707 * 19 17 16 37 37 H 1.09005 * 109.46616 * 60.00448 * 19 17 16 38 38 H 1.09001 * 109.59651 * 174.14450 * 21 20 19 39 39 H 1.09002 * 109.59224 * 294.59094 * 21 20 19 40 40 H 1.09005 * 109.37378 * 170.46802 * 22 21 20 41 41 H 1.09000 * 109.37679 * 290.12012 * 22 21 20 42 42 H 0.96999 * 118.54030 * 161.81403 * 23 22 21 43 43 H 1.08992 * 109.38852 * 47.08574 * 26 20 19 44 44 H 1.09003 * 109.38681 * 166.77977 * 26 20 19 45 45 H 1.09005 * 113.47182 * 253.47069 * 27 13 12 46 46 H 1.08997 * 113.47572 * 23.87318 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.7001 7 6 2.0087 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3232 -2.3907 0.0016 10 6 1.9971 -3.5578 0.0016 11 8 3.2100 -3.5579 -0.0043 12 6 1.2435 -4.8630 0.0022 13 7 2.1981 -5.9795 -0.0045 14 6 2.4617 -6.4412 -1.3801 15 6 2.4076 -7.8801 -0.8483 16 7 1.7167 -8.8212 -1.7334 17 6 2.4131 -9.7859 -2.3666 18 8 3.6116 -9.8752 -2.2035 19 6 1.7023 -10.7543 -3.2766 20 7 2.6747 -11.7001 -3.8404 21 6 1.9942 -12.8010 -4.5415 22 6 1.0437 -12.2071 -5.5827 23 7 1.7491 -11.2263 -6.4026 24 6 2.9046 -10.6650 -6.0313 25 8 3.4080 -9.8356 -6.7590 26 6 3.6055 -11.0187 -4.7501 27 6 1.5119 -7.2629 0.2349 28 1 -0.4850 0.8401 -0.0004 29 1 0.3532 -2.3906 0.0016 30 1 0.6209 -4.9225 0.8949 31 1 0.6128 -4.9187 -0.8850 32 1 1.6587 -6.2059 -2.0786 33 1 3.4443 -6.1531 -1.7540 34 1 3.3617 -8.2554 -0.4780 35 1 0.7582 -8.7501 -1.8636 36 1 0.9506 -11.3021 -2.7083 37 1 1.2184 -10.2053 -4.0845 38 1 2.7330 -13.4303 -5.0378 39 1 1.4268 -13.3951 -3.8252 40 1 0.6624 -13.0045 -6.2207 41 1 0.2096 -11.7218 -5.0758 42 1 1.3626 -10.9708 -7.2548 43 1 3.9738 -10.1090 -4.2761 44 1 4.4462 -11.6775 -4.9676 45 1 1.6894 -7.6711 1.2299 46 1 0.4551 -7.2465 -0.0315 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481574470.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:03 Heat of formation + Delta-G solvation = -38.999451 kcal Electronic energy + Delta-G solvation = -29059.702844 eV Core-core repulsion = 24793.394666 eV Total energy + Delta-G solvation = -4266.308178 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.35146 -40.52710 -39.17119 -37.80025 -37.48677 -34.65174 -34.25101 -33.81239 -31.26806 -30.39396 -30.31016 -28.94157 -25.94588 -25.86677 -25.23372 -23.79978 -23.12100 -21.11668 -20.41407 -19.50173 -19.25133 -17.93134 -17.84761 -17.74998 -16.82624 -16.65532 -16.18757 -16.11149 -15.68533 -15.50213 -15.16008 -15.09233 -14.68119 -14.41148 -14.31642 -14.00730 -13.72505 -13.61081 -13.26291 -13.14851 -12.87589 -12.67674 -12.33992 -12.22287 -12.15049 -11.95305 -11.62865 -11.49582 -11.20479 -11.05904 -10.87218 -10.66978 -10.37536 -10.20050 -10.09740 -9.67657 -9.48372 -9.22233 -8.90912 -8.83001 -8.21441 -7.94471 -6.40215 -3.80695 2.15478 2.32851 2.52204 2.75464 3.19497 3.27846 3.34007 3.36123 3.91111 3.94591 4.00551 4.20615 4.21338 4.27044 4.34547 4.39732 4.59933 4.65372 4.77047 4.79066 4.87604 4.96789 5.01977 5.14525 5.15388 5.29629 5.31143 5.37215 5.56912 5.63658 5.65957 5.83911 6.01091 6.05022 6.17243 6.23135 6.30484 6.31531 6.49043 6.74007 7.08667 7.22558 7.57096 7.70442 7.96219 8.07838 8.63834 9.20407 9.56056 10.08677 10.77738 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019130 B = 0.001906 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.307563 B =14688.577527 C =15316.374320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.297 4.297 8 H 0.103 0.897 9 N -0.567 5.567 10 C 0.446 3.554 11 O -0.573 6.573 12 C 0.011 3.989 13 N -0.434 5.434 14 C -0.009 4.009 15 C 0.120 3.880 16 N -0.719 5.719 17 C 0.514 3.486 18 O -0.515 6.515 19 C 0.025 3.975 20 N -0.506 5.506 21 C 0.036 3.964 22 C 0.070 3.930 23 N -0.728 5.728 24 C 0.484 3.516 25 O -0.544 6.544 26 C 0.036 3.964 27 C -0.013 4.013 28 H 0.271 0.729 29 H 0.391 0.609 30 H 0.089 0.911 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.131 0.869 35 H 0.399 0.601 36 H 0.112 0.888 37 H 0.068 0.932 38 H 0.093 0.907 39 H 0.103 0.897 40 H 0.085 0.915 41 H 0.070 0.930 42 H 0.399 0.601 43 H 0.129 0.871 44 H 0.117 0.883 45 H 0.093 0.907 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.653 -29.344 -8.526 31.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.427 4.427 8 H 0.121 0.879 9 N -0.205 5.205 10 C 0.231 3.769 11 O -0.455 6.455 12 C -0.121 4.121 13 N -0.156 5.156 14 C -0.139 4.139 15 C 0.015 3.985 16 N -0.371 5.371 17 C 0.299 3.701 18 O -0.390 6.390 19 C -0.106 4.106 20 N -0.229 5.229 21 C -0.092 4.092 22 C -0.056 4.056 23 N -0.382 5.382 24 C 0.269 3.731 25 O -0.420 6.420 26 C -0.095 4.095 27 C -0.143 4.143 28 H 0.081 0.919 29 H 0.224 0.776 30 H 0.108 0.892 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.112 0.888 34 H 0.149 0.851 35 H 0.234 0.766 36 H 0.130 0.870 37 H 0.086 0.914 38 H 0.111 0.889 39 H 0.121 0.879 40 H 0.103 0.897 41 H 0.088 0.912 42 H 0.235 0.765 43 H 0.147 0.853 44 H 0.135 0.865 45 H 0.112 0.888 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.872 -28.808 -7.711 30.073 hybrid contribution -2.437 1.217 -1.610 3.164 sum -6.309 -27.591 -9.321 29.799 Atomic orbital electron populations 1.69611 1.05921 1.28084 1.50961 1.25253 0.95652 0.99698 0.97437 0.85853 0.79265 0.80790 0.78379 1.20436 1.20946 1.19383 1.19703 0.93377 0.82208 1.47363 0.87936 1.41861 1.09095 1.04579 1.64937 1.19644 0.88413 0.84359 0.84522 1.90541 1.13624 1.86905 1.54477 1.22499 0.94530 0.93033 1.02032 1.68798 1.30482 0.99875 1.16436 1.24410 1.03713 0.93480 0.92340 1.22707 0.97954 0.87574 0.90307 1.45945 1.11518 1.32020 1.47639 1.20405 0.88019 0.80956 0.80692 1.90728 1.14333 1.71734 1.62186 1.22143 0.95222 0.94824 0.98395 1.62202 1.17148 1.10057 1.33486 1.22682 0.97353 0.93943 0.95256 1.22162 0.96033 0.92543 0.94883 1.45687 1.24162 1.44399 1.23952 1.21494 0.81131 0.80751 0.89682 1.90802 1.64214 1.32634 1.54302 1.22665 0.96078 1.03397 0.87321 1.24318 0.97283 0.92214 1.00517 0.91941 0.77595 0.89234 0.92281 0.91275 0.88790 0.85104 0.76650 0.86982 0.91381 0.88902 0.87853 0.89669 0.91230 0.76466 0.85274 0.86486 0.88825 0.91171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.76 13.05 55.50 0.72 -24.04 16 2 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 3 Si 0.93 21.40 29.55 -169.99 -5.02 16.37 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 7 C -0.30 -8.42 9.68 -14.93 -0.14 -8.57 16 8 H 0.10 3.07 7.16 -52.48 -0.38 2.69 16 9 N -0.57 -14.57 5.29 -10.96 -0.06 -14.62 16 10 C 0.45 10.76 7.85 -10.98 -0.09 10.67 16 11 O -0.57 -16.19 16.01 5.54 0.09 -16.10 16 12 C 0.01 0.20 5.30 -4.98 -0.03 0.17 16 13 N -0.43 -7.10 5.82 -246.13 -1.43 -8.53 16 14 C -0.01 -0.13 7.52 -7.56 -0.06 -0.19 16 15 C 0.12 1.38 4.59 -67.72 -0.31 1.07 16 16 N -0.72 -6.05 5.39 -53.54 -0.29 -6.34 16 17 C 0.51 4.99 7.43 -10.98 -0.08 4.90 16 18 O -0.52 -7.16 14.12 5.56 0.08 -7.08 16 19 C 0.03 0.15 4.51 -4.98 -0.02 0.13 16 20 N -0.51 -3.38 4.75 -237.55 -1.13 -4.51 16 21 C 0.04 0.11 6.02 -3.68 -0.02 0.09 16 22 C 0.07 0.18 6.46 -4.32 -0.03 0.15 16 23 N -0.73 -4.39 5.33 -61.06 -0.33 -4.72 16 24 C 0.48 4.79 7.06 -11.67 -0.08 4.71 16 25 O -0.54 -8.05 17.82 5.56 0.10 -7.96 16 26 C 0.04 0.32 5.49 -5.18 -0.03 0.29 16 27 C -0.01 -0.15 7.45 -7.55 -0.06 -0.20 16 28 H 0.27 7.01 8.31 -40.82 -0.34 6.68 16 29 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 30 H 0.09 1.38 8.08 -51.93 -0.42 0.97 16 31 H 0.06 0.90 7.30 -51.93 -0.38 0.52 16 32 H 0.07 0.92 7.42 -51.93 -0.39 0.53 16 33 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 34 H 0.13 1.75 7.46 -51.93 -0.39 1.36 16 35 H 0.40 2.12 8.75 -40.82 -0.36 1.77 16 36 H 0.11 0.34 8.08 -51.93 -0.42 -0.08 16 37 H 0.07 0.38 6.23 -51.93 -0.32 0.05 16 38 H 0.09 0.28 8.08 -51.93 -0.42 -0.14 16 39 H 0.10 0.13 8.14 -51.93 -0.42 -0.30 16 40 H 0.08 0.05 8.14 -51.93 -0.42 -0.37 16 41 H 0.07 0.11 7.10 -51.93 -0.37 -0.26 16 42 H 0.40 2.21 8.84 -40.82 -0.36 1.85 16 43 H 0.13 1.53 5.88 -51.93 -0.31 1.22 16 44 H 0.12 0.93 8.14 -51.93 -0.42 0.50 16 45 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.07 0.61 7.90 -51.93 -0.41 0.20 16 LS Contribution 378.51 15.07 5.70 5.70 Total: -1.00 -38.65 378.51 -9.09 -47.74 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -6.48 Total: 10.40 kcal Atomic # 6 Polarization: 14.73 SS G_CDS: -1.04 Total: 13.69 kcal Atomic # 7 Polarization: -60.26 SS G_CDS: -2.51 Total: -62.77 kcal Atomic # 8 Polarization: -31.40 SS G_CDS: 0.27 Total: -31.14 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -38.65 -9.09 -47.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481574470.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.737 kcal (2) G-P(sol) polarization free energy of solvation -38.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds