Wall clock time and date at job start Sat Apr 11 2020 05:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39432 * 119.53771 * 2 1 4 4 C 1.36002 * 121.08111 * 180.02562 * 3 2 1 5 5 C 1.40823 * 119.73705 * 359.97438 * 4 3 2 6 6 N 1.33270 * 120.98044 * 180.25271 * 5 4 3 7 7 C 1.31881 * 121.29841 * 180.25216 * 6 5 4 8 8 C 1.48271 * 119.23917 * 179.76242 * 7 6 5 9 9 O 1.21500 * 119.99955 * 170.86350 * 8 7 6 10 10 N 1.34773 * 120.00079 * 350.86299 * 8 7 6 11 11 C 1.47075 * 120.88221 * 352.57513 * 10 8 7 12 12 C 1.53240 * 108.52192 * 231.16542 * 11 10 8 13 13 N 1.46904 * 109.34164 * 306.17051 * 12 11 10 14 14 C 1.46897 * 111.00126 * 187.25436 * 13 12 11 15 15 C 1.50700 * 109.47068 * 169.99803 * 14 13 12 16 16 H 1.08001 * 119.99830 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00363 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99599 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00297 * 179.72641 * 17 15 14 20 20 H 1.48501 * 109.46905 * 270.27625 * 19 17 15 21 21 H 1.48501 * 109.47014 * 30.27942 * 19 17 15 22 22 H 1.48501 * 109.47033 * 150.27871 * 19 17 15 23 23 C 1.46895 * 111.26740 * 63.10151 * 13 12 11 24 24 C 1.47086 * 120.88117 * 172.55749 * 10 8 7 25 25 C 1.40286 * 121.51422 * 359.48556 * 7 6 5 26 26 C 1.36504 * 119.81951 * 0.25341 * 25 7 6 27 27 C 1.40753 * 118.24489 * 0.02562 * 26 25 7 28 28 C 1.36133 * 119.54413 * 179.97438 * 2 1 3 29 29 H 1.09005 * 109.47242 * 90.00332 * 1 2 3 30 30 H 1.09005 * 109.46545 * 209.99831 * 1 2 3 31 31 H 1.08993 * 109.47387 * 329.99835 * 1 2 3 32 32 H 1.07998 * 119.46254 * 359.97312 * 3 2 1 33 33 H 1.07997 * 120.12918 * 179.97438 * 4 3 2 34 34 H 1.08995 * 109.62938 * 111.45607 * 11 10 8 35 35 H 1.08993 * 109.79038 * 350.96698 * 11 10 8 36 36 H 1.08998 * 109.49670 * 186.21509 * 12 11 10 37 37 H 1.08995 * 109.49842 * 66.13062 * 12 11 10 38 38 H 1.09001 * 109.47007 * 50.00133 * 14 13 12 39 39 H 1.09001 * 109.46825 * 289.99826 * 14 13 12 40 40 H 0.97000 * 120.00253 * 359.71788 * 18 17 15 41 41 H 1.09004 * 109.49375 * 56.85912 * 23 13 12 42 42 H 1.09001 * 109.49398 * 176.93535 * 23 13 12 43 43 H 1.08999 * 109.62982 * 248.54685 * 24 10 8 44 44 H 1.09003 * 109.62728 * 9.12180 * 24 10 8 45 45 H 1.07997 * 120.08305 * 180.27333 * 25 7 6 46 46 H 1.08005 * 120.87444 * 179.97438 * 26 25 7 47 47 H 1.08004 * 120.17539 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.2131 0.0000 4 6 3.5539 1.2497 -0.0005 5 6 4.2851 0.0462 -0.0005 6 7 5.6178 0.0532 0.0040 7 6 6.3088 -1.0701 -0.0009 8 6 7.7903 -1.0090 -0.0009 9 8 8.4400 -2.0227 0.1617 10 7 8.4161 0.1709 -0.1813 11 6 7.6592 1.3797 -0.5402 12 6 8.3188 2.0211 -1.7657 13 7 9.7453 2.2400 -1.4917 14 6 10.3773 3.0080 -2.5727 15 6 11.7630 3.4232 -2.1503 16 1 12.1370 3.1441 -1.1763 17 6 12.5538 4.1586 -3.0076 18 7 12.0986 4.4980 -4.1938 19 14 14.2686 4.6797 -2.4810 20 1 14.1985 5.9990 -1.8027 21 1 14.8270 3.6709 -1.5452 22 1 15.1433 4.7837 -3.6765 23 6 10.4465 0.9684 -1.2698 24 6 9.8741 0.2839 -0.0240 25 6 5.6744 -2.3213 -0.0004 26 6 4.3111 -2.3912 0.0001 27 6 3.5825 -1.1869 -0.0005 28 6 2.1783 -1.1843 0.0005 29 1 -0.3634 -0.0001 -1.0277 30 1 -0.3632 -0.8901 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 1.6382 2.1388 -0.0004 33 1 4.0706 2.1981 -0.0009 34 1 7.6741 2.0820 0.2932 35 1 6.6289 1.1136 -0.7763 36 1 7.8388 2.9762 -1.9791 37 1 8.2109 1.3594 -2.6250 38 1 9.7809 3.8955 -2.7846 39 1 10.4403 2.3902 -3.4685 40 1 11.2080 4.2276 -4.4672 41 1 10.3089 0.3212 -2.1360 42 1 11.5095 1.1599 -1.1235 43 1 10.1020 0.8808 0.8591 44 1 10.3093 -0.7101 0.0802 45 1 6.2631 -3.2267 -0.0001 46 1 3.8051 -3.3453 0.0000 47 1 1.6337 -2.1170 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602202425.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:51 Heat of formation + Delta-G solvation = 43.128372 kcal Electronic energy + Delta-G solvation = -28752.032395 eV Core-core repulsion = 24900.134810 eV Total energy + Delta-G solvation = -3851.897585 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.45318 -39.83826 -37.88795 -37.33109 -34.73011 -33.87004 -32.71590 -32.33809 -30.70160 -30.62719 -28.49047 -27.42085 -25.25549 -24.52375 -23.88369 -23.06187 -22.40299 -22.09410 -20.93019 -19.27664 -18.32463 -17.54927 -17.12758 -16.76798 -15.97476 -15.69109 -15.56999 -14.78888 -14.68796 -14.55713 -14.50958 -14.25915 -14.06333 -13.87690 -13.75114 -13.64149 -13.47910 -13.35459 -12.89968 -12.79797 -12.37223 -11.91949 -11.79420 -11.68673 -11.55583 -11.27241 -11.18901 -11.10910 -10.84751 -10.71896 -10.62898 -10.29851 -10.26995 -10.08660 -9.17836 -9.08048 -8.74491 -8.57816 -8.37263 -8.37117 -7.36329 -6.37352 -4.06438 -0.15171 0.33619 1.56115 2.15800 2.97128 3.03014 3.45033 3.48309 3.64137 3.71232 3.79378 4.14989 4.30729 4.32756 4.46438 4.52162 4.60214 4.70550 4.81572 4.88129 5.03324 5.08886 5.13787 5.34274 5.38021 5.39053 5.41544 5.48822 5.55661 5.63398 5.67737 5.71047 5.74954 5.83998 5.90902 5.94321 6.04346 6.10596 6.24530 6.33070 6.44806 6.45054 6.54136 6.73293 6.98485 7.08029 7.30965 7.52640 7.76399 7.94304 8.13700 8.29918 8.57229 8.86142 9.64460 11.01769 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018722 B = 0.002436 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.210312 B =11490.577947 C =12656.616032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.075 4.075 3 C -0.102 4.102 4 C -0.080 4.080 5 C 0.114 3.886 6 N -0.430 5.430 7 C 0.122 3.878 8 C 0.563 3.437 9 O -0.541 6.541 10 N -0.582 5.582 11 C 0.085 3.915 12 C 0.037 3.963 13 N -0.530 5.530 14 C 0.183 3.817 15 C -0.588 4.588 16 H 0.058 0.942 17 C 0.013 3.987 18 N -0.914 5.914 19 Si 1.075 2.925 20 H -0.287 1.287 21 H -0.288 1.288 22 H -0.285 1.285 23 C 0.053 3.947 24 C 0.112 3.888 25 C -0.122 4.122 26 C -0.063 4.063 27 C -0.083 4.083 28 C -0.106 4.106 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.132 0.868 33 H 0.142 0.858 34 H 0.072 0.928 35 H 0.138 0.862 36 H 0.079 0.921 37 H 0.022 0.978 38 H 0.021 0.979 39 H -0.020 1.020 40 H 0.267 0.733 41 H 0.023 0.977 42 H 0.099 0.901 43 H 0.076 0.924 44 H 0.090 0.910 45 H 0.151 0.849 46 H 0.146 0.854 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.671 -11.889 9.617 29.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.075 4.075 3 C -0.122 4.122 4 C -0.099 4.099 5 C -0.009 4.009 6 N -0.142 5.142 7 C -0.031 4.031 8 C 0.349 3.651 9 O -0.418 6.418 10 N -0.313 5.313 11 C -0.038 4.038 12 C -0.092 4.092 13 N -0.255 5.255 14 C 0.058 3.942 15 C -0.627 4.627 16 H 0.076 0.924 17 C -0.190 4.190 18 N -0.551 5.551 19 Si 0.904 3.096 20 H -0.214 1.214 21 H -0.214 1.214 22 H -0.211 1.211 23 C -0.076 4.076 24 C -0.010 4.010 25 C -0.143 4.143 26 C -0.089 4.089 27 C -0.085 4.085 28 C -0.124 4.124 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.150 0.850 33 H 0.160 0.840 34 H 0.090 0.910 35 H 0.154 0.846 36 H 0.097 0.903 37 H 0.040 0.960 38 H 0.039 0.961 39 H -0.003 1.003 40 H 0.077 0.923 41 H 0.042 0.958 42 H 0.117 0.883 43 H 0.095 0.905 44 H 0.108 0.892 45 H 0.169 0.831 46 H 0.163 0.837 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -22.538 -10.460 9.643 26.652 hybrid contribution -1.819 -1.893 -0.361 2.650 sum -24.357 -12.353 9.282 28.845 Atomic orbital electron populations 1.20872 0.90647 1.03183 1.02741 1.19779 0.96616 0.92990 0.98086 1.20857 0.93985 0.97935 0.99412 1.20924 0.93619 0.96999 0.98316 1.19041 0.89254 0.93084 0.99525 1.68041 1.06777 1.28440 1.10905 1.21456 0.94458 0.89598 0.97579 1.17926 0.85648 0.83591 0.77950 1.90755 1.65840 1.33852 1.51382 1.48100 1.08696 1.08788 1.65688 1.23051 0.98107 0.85204 0.97407 1.22516 0.91452 0.99598 0.95671 1.62020 1.00193 1.17203 1.46057 1.19826 0.95373 0.91798 0.87247 1.21986 0.99076 1.37792 1.03838 0.92359 1.25868 1.04934 0.94339 0.93873 1.70768 1.19865 1.44688 1.19779 0.83447 0.74606 0.76210 0.75364 1.21415 1.21416 1.21129 1.22322 1.00321 0.89987 0.94967 1.21961 0.78238 1.01492 0.99261 1.21730 0.95098 0.98775 0.98685 1.21454 0.93632 0.97841 0.95982 1.18931 0.94816 0.93940 1.00773 1.20836 0.92085 0.98361 1.01166 0.90718 0.91281 0.91123 0.84970 0.84041 0.91009 0.84558 0.90313 0.96019 0.96091 1.00283 0.92326 0.95840 0.88324 0.90534 0.89193 0.83147 0.83668 0.85097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.48 9.98 36.01 0.36 -0.13 16 2 C -0.07 -0.51 5.85 -104.93 -0.61 -1.12 16 3 C -0.10 -0.74 9.58 -39.94 -0.38 -1.12 16 4 C -0.08 -0.74 9.99 -39.41 -0.39 -1.13 16 5 C 0.11 1.28 6.61 -84.85 -0.56 0.72 16 6 N -0.43 -5.65 6.06 -7.54 -0.05 -5.69 16 7 C 0.12 1.68 6.60 -82.95 -0.55 1.14 16 8 C 0.56 9.28 7.67 -12.14 -0.09 9.19 16 9 O -0.54 -9.94 15.78 5.37 0.08 -9.85 16 10 N -0.58 -9.81 3.01 -173.42 -0.52 -10.33 16 11 C 0.08 1.35 5.98 -3.60 -0.02 1.33 16 12 C 0.04 0.69 5.62 -3.70 -0.02 0.67 16 13 N -0.53 -11.67 4.62 -235.77 -1.09 -12.76 16 14 C 0.18 4.79 4.04 -4.98 -0.02 4.77 16 15 C -0.59 -16.69 8.41 -34.44 -0.29 -16.98 16 16 H 0.06 1.65 7.13 -52.49 -0.37 1.27 16 17 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 18 N -0.91 -28.01 13.65 55.43 0.76 -27.25 16 19 Si 1.08 25.46 29.90 -169.99 -5.08 20.38 16 20 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 C 0.05 1.08 5.46 -3.71 -0.02 1.06 16 24 C 0.11 1.96 6.62 -3.60 -0.02 1.94 16 25 C -0.12 -1.37 9.53 -39.44 -0.38 -1.75 16 26 C -0.06 -0.56 9.88 -39.26 -0.39 -0.95 16 27 C -0.08 -0.80 5.75 -106.71 -0.61 -1.41 16 28 C -0.11 -0.78 9.37 -39.52 -0.37 -1.15 16 29 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.23 8.07 -51.93 -0.42 -0.19 16 31 H 0.07 0.24 8.08 -51.93 -0.42 -0.18 16 32 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 33 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.14 2.00 4.18 -80.15 -0.34 1.67 16 36 H 0.08 1.40 7.99 -51.93 -0.41 0.98 16 37 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.02 0.58 7.84 -51.93 -0.41 0.17 16 39 H -0.02 -0.57 7.99 -51.93 -0.41 -0.99 16 40 H 0.27 8.15 7.22 -40.82 -0.29 7.86 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.10 2.13 6.67 -51.93 -0.35 1.79 16 43 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 44 H 0.09 1.52 7.04 -51.93 -0.37 1.16 16 45 H 0.15 1.56 7.63 -52.49 -0.40 1.16 16 46 H 0.15 0.78 8.06 -52.48 -0.42 0.36 16 47 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 LS Contribution 379.49 15.07 5.72 5.72 Total: -1.00 -33.83 379.49 -11.44 -45.27 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -6.79 Total: -0.85 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -4.47 Total: -4.63 kcal Atomic # 7 Polarization: -55.13 SS G_CDS: -0.90 Total: -56.03 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.08 Total: -9.85 kcal Atomic # 14 Polarization: 25.46 SS G_CDS: -5.08 Total: 20.38 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.83 -11.44 -45.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602202425.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.400 kcal (2) G-P(sol) polarization free energy of solvation -33.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds