Wall clock time and date at job start Sat Apr 11 2020 05:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36531 * 120.87940 * 2 1 4 4 C 1.40239 * 119.82476 * 179.97438 * 3 2 1 5 5 C 1.48276 * 119.24313 * 179.97438 * 4 3 2 6 6 O 1.21496 * 119.99811 * 359.97438 * 5 4 3 7 7 N 1.34779 * 119.99599 * 179.97438 * 5 4 3 8 8 C 1.46506 * 119.99461 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.47212 * 34.99880 * 8 7 5 10 10 C 1.53005 * 109.46831 * 274.99712 * 8 7 5 11 11 C 1.53002 * 109.47035 * 155.00115 * 8 7 5 12 12 C 1.53943 * 113.74049 * 278.74097 * 11 8 7 13 13 N 1.47812 * 86.03624 * 222.08213 * 12 11 8 14 14 C 1.36932 * 134.45834 * 204.63677 * 13 12 11 15 15 H 1.07995 * 120.00395 * 179.86632 * 14 13 12 16 16 C 1.38817 * 120.00007 * 359.87680 * 14 13 12 17 17 N 1.31616 * 120.00028 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99813 * 179.97438 * 16 14 13 19 19 H 1.48491 * 109.47533 * 59.99831 * 18 16 14 20 20 H 1.48503 * 109.46715 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47406 * 299.99136 * 18 16 14 22 22 C 1.47583 * 91.04785 * 24.54989 * 13 12 11 23 23 N 1.31904 * 121.51266 * 0.24909 * 4 3 2 24 24 C 1.33241 * 121.29965 * 359.48318 * 23 4 3 25 25 C 1.40834 * 120.98294 * 180.25874 * 24 23 4 26 26 C 1.35986 * 119.73468 * 180.24962 * 25 24 23 27 27 C 1.39443 * 121.08682 * 0.02562 * 26 25 24 28 28 C 1.36126 * 120.92180 * 359.97129 * 27 26 25 29 29 C 1.40424 * 119.65130 * 0.04724 * 28 27 26 30 30 H 1.09005 * 109.47349 * 90.00509 * 1 2 3 31 31 H 1.09005 * 109.47400 * 210.00450 * 1 2 3 32 32 H 1.08998 * 109.47154 * 330.00467 * 1 2 3 33 33 H 1.08003 * 120.08978 * 359.95440 * 3 2 1 34 34 H 0.96995 * 120.00725 * 359.97438 * 7 5 4 35 35 H 1.08992 * 109.47061 * 300.00078 * 10 8 7 36 36 H 1.09001 * 109.46812 * 60.00445 * 10 8 7 37 37 H 1.09002 * 109.46935 * 180.02562 * 10 8 7 38 38 H 1.09002 * 112.94415 * 50.33028 * 11 8 7 39 39 H 1.09003 * 113.76909 * 336.34642 * 12 11 8 40 40 H 1.09000 * 113.77268 * 107.74525 * 12 11 8 41 41 H 0.96995 * 120.00501 * 180.02562 * 17 16 14 42 42 H 1.09002 * 113.76477 * 221.14838 * 22 13 12 43 43 H 1.09002 * 113.87465 * 89.77029 * 22 13 12 44 44 H 1.08004 * 120.13219 * 0.22698 * 25 24 23 45 45 H 1.07998 * 119.45883 * 179.97438 * 26 25 24 46 46 H 1.07998 * 119.53664 * 179.97438 * 27 26 25 47 47 H 1.08002 * 120.17403 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2077 1.1718 0.0000 4 6 3.6099 1.1460 0.0005 5 6 4.3579 2.4262 0.0000 6 8 3.7559 3.4815 -0.0015 7 7 5.7057 2.4191 0.0010 8 6 6.4448 3.6841 -0.0002 9 1 5.9008 4.4233 0.5879 10 6 6.5946 4.1858 -1.4378 11 6 7.8304 3.4657 0.6108 12 6 7.8365 3.4689 2.1502 13 7 9.0720 4.2731 2.0415 14 6 10.1508 4.4887 2.8567 15 1 10.9494 5.1404 2.5345 16 6 10.2180 3.8695 4.0973 17 7 9.2446 3.0756 4.4902 18 14 11.6901 4.1632 5.2091 19 1 11.7912 5.6107 5.5247 20 1 11.5212 3.3933 6.4677 21 1 12.9279 3.7193 4.5192 22 6 8.6770 4.7482 0.7012 23 7 4.2785 0.0090 -0.0038 24 6 3.6480 -1.1648 0.0013 25 6 4.3687 -2.3749 0.0021 26 6 3.6993 -3.5585 0.0022 27 6 2.3054 -3.5974 0.0011 28 6 1.5736 -2.4496 0.0004 29 6 2.2291 -1.2078 -0.0001 30 1 -0.3634 -0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5137 33 1 1.6836 2.1161 -0.0007 34 1 6.1863 1.5766 0.0025 35 1 7.1386 3.4466 -2.0257 36 1 5.6074 4.3414 -1.8730 37 1 7.1449 5.1267 -1.4387 38 1 8.3600 2.6202 0.1716 39 1 6.9986 4.0085 2.5917 40 1 7.9895 2.4839 2.5911 41 1 9.2914 2.6432 5.3571 42 1 9.5000 4.7826 -0.0128 43 1 8.0867 5.6644 0.7141 44 1 5.4486 -2.3627 0.0021 45 1 4.2563 -4.4838 0.0023 46 1 1.7994 -4.5515 0.0008 47 1 0.4945 -2.4938 0.0000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969985018.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:15 Heat of formation + Delta-G solvation = 69.408856 kcal Electronic energy + Delta-G solvation = -28384.231273 eV Core-core repulsion = 24533.473296 eV Total energy + Delta-G solvation = -3850.757978 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.30582 -39.63914 -38.09670 -37.05320 -35.15425 -34.67617 -32.17660 -31.23012 -30.66063 -30.03607 -28.11319 -27.47192 -25.45613 -24.56637 -23.89297 -23.71485 -21.90881 -21.19426 -20.23479 -19.23577 -18.28128 -17.90378 -17.21801 -16.67624 -15.96488 -15.58272 -15.31492 -14.98486 -14.83487 -14.59594 -14.33865 -14.16465 -13.82973 -13.63777 -13.45511 -13.39557 -13.19186 -12.99109 -12.51316 -12.39256 -12.14836 -11.92894 -11.86596 -11.68570 -11.60513 -11.28545 -11.23748 -10.86731 -10.70063 -10.47984 -10.33617 -10.26454 -9.90745 -9.70548 -9.58832 -9.34901 -9.07465 -8.74971 -8.74153 -8.49285 -6.82409 -5.71371 -3.03702 -0.04325 0.43620 1.66682 2.26730 3.15720 3.20569 3.42661 3.46425 3.47925 3.88478 3.91516 4.18038 4.39392 4.48195 4.49428 4.54390 4.82719 4.87199 4.96920 5.08369 5.14607 5.18416 5.19245 5.32694 5.34490 5.39797 5.57724 5.59171 5.69727 5.70370 5.73090 5.79526 5.85764 6.00449 6.06652 6.08317 6.13007 6.21233 6.28683 6.40365 6.45281 6.52229 6.63423 6.70865 6.84781 7.29476 7.42277 7.43727 7.61770 7.78128 8.03212 8.32627 9.09465 9.75903 10.65759 11.45528 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013216 B = 0.002551 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.136760 B =10974.513308 C =12155.225519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.033 4.033 3 C -0.129 4.129 4 C 0.127 3.873 5 C 0.567 3.433 6 O -0.536 6.536 7 N -0.693 5.693 8 C 0.148 3.852 9 H 0.089 0.911 10 C -0.158 4.158 11 C -0.146 4.146 12 C 0.171 3.829 13 N -0.613 5.613 14 C -0.223 4.223 15 H 0.079 0.921 16 C -0.009 4.009 17 N -0.921 5.921 18 Si 0.912 3.088 19 H -0.286 1.286 20 H -0.290 1.290 21 H -0.285 1.285 22 C 0.131 3.869 23 N -0.445 5.445 24 C 0.128 3.872 25 C -0.082 4.082 26 C -0.106 4.106 27 C -0.110 4.110 28 C -0.103 4.103 29 C -0.088 4.088 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.150 0.850 34 H 0.410 0.590 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.026 0.974 40 H 0.072 0.928 41 H 0.253 0.747 42 H 0.044 0.956 43 H 0.035 0.965 44 H 0.140 0.860 45 H 0.131 0.869 46 H 0.128 0.872 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.351 -13.168 -13.294 26.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.041 4.041 3 C -0.149 4.149 4 C -0.027 4.027 5 C 0.351 3.649 6 O -0.412 6.412 7 N -0.343 5.343 8 C 0.043 3.957 9 H 0.107 0.893 10 C -0.216 4.216 11 C -0.166 4.166 12 C 0.046 3.954 13 N -0.339 5.339 14 C -0.351 4.351 15 H 0.097 0.903 16 C -0.205 4.205 17 N -0.568 5.568 18 Si 0.742 3.258 19 H -0.212 1.212 20 H -0.216 1.216 21 H -0.211 1.211 22 C 0.004 3.996 23 N -0.157 5.157 24 C 0.004 3.996 25 C -0.101 4.101 26 C -0.126 4.126 27 C -0.128 4.128 28 C -0.122 4.122 29 C -0.090 4.090 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.168 0.832 34 H 0.246 0.754 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.107 0.893 39 H 0.044 0.956 40 H 0.090 0.910 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.052 0.948 44 H 0.158 0.842 45 H 0.149 0.851 46 H 0.146 0.854 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -17.609 -12.489 -12.987 25.193 hybrid contribution 0.131 -0.245 0.797 0.844 sum -17.477 -12.733 -12.190 24.823 Atomic orbital electron populations 1.20871 0.89510 1.03827 1.03229 1.20124 0.96879 0.91679 0.95382 1.21624 0.93699 0.99671 0.99923 1.21420 0.91687 0.92273 0.97290 1.17870 0.82758 0.87082 0.77205 1.90766 1.68785 1.31072 1.50567 1.45971 1.05421 1.10895 1.71971 1.21193 0.92653 0.85175 0.96638 0.89277 1.22131 1.01653 1.01539 0.96310 1.23821 0.92823 1.00171 0.99821 1.22293 0.87660 0.97045 0.88436 1.45986 1.18910 1.53343 1.15646 1.18973 0.95650 1.23916 0.96524 0.90346 1.24785 0.98279 0.99939 0.97512 1.69809 1.32307 1.33784 1.20895 0.86209 0.81978 0.77537 0.80086 1.21232 1.21599 1.21114 1.22485 0.94704 0.93621 0.88767 1.67847 1.39837 0.97365 1.10604 1.18851 0.89733 0.92058 0.98940 1.20936 1.00800 0.89923 0.98434 1.20941 0.94444 0.98143 0.99082 1.20992 0.94189 0.98541 0.99052 1.21009 1.00122 0.91118 0.99942 1.18834 0.93955 0.94328 1.01859 0.90084 0.90656 0.90312 0.83211 0.75363 0.92637 0.92750 0.91271 0.89295 0.95646 0.91005 0.93653 0.93758 0.94751 0.84178 0.85072 0.85437 0.85016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.74 9.59 36.00 0.35 -0.40 16 2 C -0.03 -0.33 5.92 -104.30 -0.62 -0.95 16 3 C -0.13 -1.56 9.23 -39.45 -0.36 -1.93 16 4 C 0.13 1.82 6.75 -82.96 -0.56 1.26 16 5 C 0.57 9.14 7.78 -12.13 -0.09 9.05 16 6 O -0.54 -9.78 15.94 5.37 0.09 -9.69 16 7 N -0.69 -10.75 5.06 -54.61 -0.28 -11.03 16 8 C 0.15 2.41 2.38 -67.92 -0.16 2.25 16 9 H 0.09 1.63 7.41 -51.93 -0.39 1.25 16 10 C -0.16 -2.19 9.31 37.16 0.35 -1.85 16 11 C -0.15 -2.73 3.47 -89.70 -0.31 -3.04 16 12 C 0.17 4.12 7.08 -2.84 -0.02 4.10 16 13 N -0.61 -16.08 3.70 -177.71 -0.66 -16.74 16 14 C -0.22 -6.40 10.70 -15.06 -0.16 -6.56 16 15 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 16 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 17 N -0.92 -27.93 11.39 55.49 0.63 -27.30 16 18 Si 0.91 22.56 29.55 -169.99 -5.02 17.53 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 C 0.13 2.68 7.64 -2.97 -0.02 2.66 16 23 N -0.44 -6.21 9.47 -7.54 -0.07 -6.28 16 24 C 0.13 1.58 6.61 -84.85 -0.56 1.02 16 25 C -0.08 -0.84 9.99 -39.41 -0.39 -1.23 16 26 C -0.11 -0.82 9.94 -39.94 -0.40 -1.22 16 27 C -0.11 -0.77 9.95 -39.89 -0.40 -1.17 16 28 C -0.10 -0.82 9.31 -39.52 -0.37 -1.18 16 29 C -0.09 -0.93 5.75 -106.71 -0.61 -1.55 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.37 6.51 -51.93 -0.34 0.03 16 32 H 0.08 0.45 8.10 -51.93 -0.42 0.03 16 33 H 0.15 1.70 7.60 -52.48 -0.40 1.30 16 34 H 0.41 6.01 7.91 -40.82 -0.32 5.68 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.91 7.52 -51.93 -0.39 0.52 16 38 H 0.09 1.61 8.14 -51.93 -0.42 1.18 16 39 H 0.03 0.65 7.99 -51.93 -0.41 0.23 16 40 H 0.07 1.92 7.17 -51.93 -0.37 1.54 16 41 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.03 0.69 8.10 -51.93 -0.42 0.27 16 44 H 0.14 1.30 8.06 -52.48 -0.42 0.88 16 45 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 46 H 0.13 0.55 8.06 -52.49 -0.42 0.12 16 47 H 0.13 0.70 6.44 -52.49 -0.34 0.36 16 LS Contribution 389.08 15.07 5.86 5.86 Total: -1.00 -34.40 389.08 -10.62 -45.02 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -6.73 Total: 3.71 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -4.45 Total: -1.08 kcal Atomic # 7 Polarization: -60.98 SS G_CDS: -0.37 Total: -61.35 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.09 Total: -9.69 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.40 -10.62 -45.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969985018.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.429 kcal (2) G-P(sol) polarization free energy of solvation -34.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds