Wall clock time and date at job start Sat Apr 11 2020 05:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36532 * 120.88175 * 2 1 4 4 C 1.40243 * 119.82348 * 179.97438 * 3 2 1 5 5 C 1.48275 * 119.24060 * 179.97438 * 4 3 2 6 6 O 1.21506 * 120.00164 * 0.02562 * 5 4 3 7 7 N 1.34780 * 119.99788 * 180.02562 * 5 4 3 8 8 C 1.46496 * 119.99734 * 180.02562 * 7 5 4 9 9 H 1.08995 * 109.47552 * 324.99740 * 8 7 5 10 10 C 1.53008 * 109.47421 * 84.99427 * 8 7 5 11 11 C 1.52998 * 109.46930 * 204.99506 * 8 7 5 12 12 C 1.53504 * 114.20785 * 179.97438 * 11 8 7 13 13 N 1.47069 * 87.98363 * 220.34571 * 12 11 8 14 14 C 1.36941 * 136.05552 * 207.07801 * 13 12 11 15 15 H 1.08000 * 119.99396 * 7.56018 * 14 13 12 16 16 C 1.38806 * 119.99993 * 187.55101 * 14 13 12 17 17 N 1.31621 * 119.99759 * 174.37714 * 16 14 13 18 18 Si 1.86799 * 119.99972 * 354.38427 * 16 14 13 19 19 H 1.48501 * 109.46963 * 174.94900 * 18 16 14 20 20 H 1.48498 * 109.47184 * 294.94894 * 18 16 14 21 21 H 1.48507 * 109.47082 * 54.95224 * 18 16 14 22 22 C 1.47064 * 87.88742 * 27.34488 * 13 12 11 23 23 N 1.31901 * 121.51618 * 0.25324 * 4 3 2 24 24 C 1.33239 * 121.29557 * 359.47973 * 23 4 3 25 25 C 1.40837 * 120.98228 * 180.25596 * 24 23 4 26 26 C 1.35991 * 119.73412 * 180.25325 * 25 24 23 27 27 C 1.39435 * 121.09037 * 0.02562 * 26 25 24 28 28 C 1.36133 * 120.92162 * 359.93836 * 27 26 25 29 29 C 1.40432 * 119.64531 * 0.08219 * 28 27 26 30 30 H 1.09006 * 109.47102 * 90.00253 * 1 2 3 31 31 H 1.09002 * 109.47670 * 210.00211 * 1 2 3 32 32 H 1.09006 * 109.47322 * 330.00811 * 1 2 3 33 33 H 1.08009 * 120.08983 * 359.95392 * 3 2 1 34 34 H 0.96996 * 120.00127 * 359.97438 * 7 5 4 35 35 H 1.08991 * 109.47021 * 179.97438 * 10 8 7 36 36 H 1.08994 * 109.46942 * 300.00242 * 10 8 7 37 37 H 1.09004 * 109.46240 * 60.00200 * 10 8 7 38 38 H 1.09002 * 113.41395 * 313.19707 * 11 8 7 39 39 H 1.08997 * 113.46758 * 105.56146 * 12 11 8 40 40 H 1.09000 * 113.51898 * 335.13170 * 12 11 8 41 41 H 0.96993 * 120.00423 * 354.88754 * 17 16 14 42 42 H 1.08993 * 113.47012 * 87.43421 * 22 13 12 43 43 H 1.09000 * 113.46758 * 217.87997 * 22 13 12 44 44 H 1.08004 * 120.13026 * 0.23139 * 25 24 23 45 45 H 1.08001 * 119.45089 * 180.02562 * 26 25 24 46 46 H 1.08002 * 119.53980 * 179.97438 * 27 26 25 47 47 H 1.07998 * 120.17708 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2078 1.1718 0.0000 4 6 3.6099 1.1459 0.0005 5 6 4.3580 2.4261 0.0000 6 8 3.7560 3.4815 -0.0005 7 7 5.7058 2.4190 -0.0001 8 6 6.4449 3.6838 -0.0001 9 1 5.9014 4.4223 -0.5895 10 6 6.5935 4.1878 1.4370 11 6 7.8309 3.4646 -0.6096 12 6 8.7017 4.7275 -0.6637 13 7 9.1521 4.2970 -1.9959 14 6 10.2706 4.4785 -2.7650 15 1 11.1385 4.9680 -2.3485 16 6 10.2887 4.0331 -4.0795 17 7 11.3192 4.3046 -4.8521 18 14 8.8507 3.0488 -4.7521 19 1 9.0560 2.8000 -6.2017 20 1 8.7603 1.7515 -4.0351 21 1 7.5924 3.8125 -4.5543 22 6 7.8701 3.5914 -2.1415 23 7 4.2786 0.0089 -0.0039 24 6 3.6480 -1.1649 0.0012 25 6 4.3686 -2.3749 0.0018 26 6 3.6991 -3.5586 0.0019 27 6 2.3053 -3.5975 0.0008 28 6 1.5735 -2.4496 0.0010 29 6 2.2292 -1.2078 0.0004 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3634 0.8901 0.5137 33 1 1.6836 2.1162 -0.0008 34 1 6.1864 1.5764 0.0007 35 1 7.1438 5.1286 1.4369 36 1 5.6061 4.3439 1.8712 37 1 7.1371 3.4493 2.0264 38 1 8.3423 2.5853 -0.2177 39 1 9.4975 4.7384 0.0810 40 1 8.1257 5.6528 -0.6784 41 1 12.0313 4.8775 -4.5274 42 1 7.0739 4.2165 -2.5456 43 1 7.9573 2.6342 -2.6556 44 1 5.4486 -2.3628 0.0019 45 1 4.2562 -4.4838 0.0027 46 1 1.7992 -4.5516 0.0005 47 1 0.4944 -2.4937 0.0006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969985019.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:19 Heat of formation + Delta-G solvation = 77.324599 kcal Electronic energy + Delta-G solvation = -28513.364293 eV Core-core repulsion = 24662.949568 eV Total energy + Delta-G solvation = -3850.414725 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -41.41516 -39.86405 -38.59465 -37.19078 -35.29723 -34.90275 -32.41809 -31.41655 -30.75874 -30.27489 -28.20818 -27.72296 -25.71053 -25.03563 -23.95809 -23.61848 -21.91903 -21.11161 -20.40704 -19.49159 -18.41237 -18.08741 -17.46448 -17.32056 -16.20017 -15.74157 -15.45754 -15.29669 -15.05282 -14.66011 -14.54823 -14.34870 -13.85135 -13.75491 -13.67345 -13.48936 -13.30439 -13.13346 -12.94436 -12.58666 -12.32853 -12.02618 -12.00076 -11.87541 -11.79207 -11.77233 -11.48203 -10.91243 -10.63739 -10.57318 -10.42827 -10.32244 -10.19319 -9.73032 -9.26002 -9.14699 -9.10445 -8.88544 -8.86764 -8.58984 -7.13358 -6.26749 -3.20553 -0.14776 0.33629 1.56778 2.15363 3.00796 3.06261 3.44347 3.48275 3.67702 3.76766 3.79823 4.08725 4.28879 4.38078 4.45171 4.62499 4.71199 4.74704 4.77926 4.86671 4.95331 4.99388 5.09170 5.11363 5.13021 5.30099 5.46446 5.49616 5.51512 5.59603 5.60579 5.64499 5.70221 5.78613 5.90291 5.97407 6.02858 6.04769 6.11489 6.18477 6.26708 6.30467 6.33942 6.42028 6.42769 6.60373 6.94768 7.15258 7.30176 7.61588 8.15876 8.26183 9.00370 9.52841 10.39816 11.23270 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013217 B = 0.002797 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.988801 B =10007.953921 C =11033.631115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.031 4.031 3 C -0.129 4.129 4 C 0.125 3.875 5 C 0.568 3.432 6 O -0.533 6.533 7 N -0.697 5.697 8 C 0.149 3.851 9 H 0.092 0.908 10 C -0.158 4.158 11 C -0.139 4.139 12 C 0.135 3.865 13 N -0.629 5.629 14 C -0.302 4.302 15 H 0.083 0.917 16 C -0.025 4.025 17 N -0.935 5.935 18 Si 1.069 2.931 19 H -0.295 1.295 20 H -0.293 1.293 21 H -0.287 1.287 22 C 0.103 3.897 23 N -0.446 5.446 24 C 0.127 3.873 25 C -0.083 4.083 26 C -0.105 4.105 27 C -0.109 4.109 28 C -0.103 4.103 29 C -0.087 4.087 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.151 0.849 34 H 0.411 0.589 35 H 0.070 0.930 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.099 0.901 39 H 0.047 0.953 40 H 0.040 0.960 41 H 0.260 0.740 42 H 0.045 0.955 43 H 0.052 0.948 44 H 0.140 0.860 45 H 0.132 0.868 46 H 0.129 0.871 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.564 -15.572 14.682 31.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.039 4.039 3 C -0.150 4.150 4 C -0.028 4.028 5 C 0.352 3.648 6 O -0.409 6.409 7 N -0.347 5.347 8 C 0.045 3.955 9 H 0.110 0.890 10 C -0.216 4.216 11 C -0.159 4.159 12 C 0.008 3.992 13 N -0.357 5.357 14 C -0.429 4.429 15 H 0.101 0.899 16 C -0.224 4.224 17 N -0.577 5.577 18 Si 0.902 3.098 19 H -0.223 1.223 20 H -0.221 1.221 21 H -0.214 1.214 22 C -0.023 4.023 23 N -0.158 5.158 24 C 0.004 3.996 25 C -0.102 4.102 26 C -0.125 4.125 27 C -0.127 4.127 28 C -0.122 4.122 29 C -0.089 4.089 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.168 0.832 34 H 0.247 0.753 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.117 0.883 39 H 0.065 0.935 40 H 0.057 0.943 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.070 0.930 44 H 0.158 0.842 45 H 0.150 0.850 46 H 0.146 0.854 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -23.315 -15.621 13.173 31.002 hybrid contribution -0.041 0.448 1.288 1.364 sum -23.355 -15.173 14.461 31.382 Atomic orbital electron populations 1.20881 0.89438 1.03777 1.03402 1.20137 0.96928 0.91654 0.95189 1.21622 0.93638 0.99714 0.99993 1.21380 0.91705 0.92191 0.97560 1.17886 0.82655 0.87179 0.77116 1.90779 1.68750 1.31052 1.50284 1.45993 1.05552 1.10792 1.72395 1.21115 0.91968 0.85332 0.97105 0.89004 1.22120 1.01927 1.01682 0.95898 1.23565 0.93706 1.01130 0.97540 1.22255 0.94302 0.93592 0.89058 1.45969 1.13501 1.59223 1.17026 1.20156 0.90047 1.38891 0.93765 0.89928 1.25703 1.03307 1.01728 0.91639 1.70913 1.10646 1.38943 1.37231 0.83727 0.74899 0.75956 0.75220 1.22253 1.22107 1.21421 1.22836 0.89629 0.96559 0.93269 1.67830 1.39884 0.97396 1.10705 1.18840 0.89754 0.92009 0.99002 1.20933 1.00780 0.89923 0.98569 1.20955 0.94462 0.98167 0.98900 1.21009 0.94184 0.98594 0.98892 1.21024 1.00178 0.91092 0.99870 1.18841 0.93936 0.94359 1.01791 0.89942 0.90638 0.90315 0.83173 0.75330 0.91089 0.92486 0.92447 0.88277 0.93478 0.94269 0.92962 0.93741 0.93038 0.84196 0.85009 0.85355 0.84946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.66 9.59 36.00 0.35 -0.31 16 2 C -0.03 -0.29 5.92 -104.30 -0.62 -0.90 16 3 C -0.13 -1.44 9.23 -39.44 -0.36 -1.80 16 4 C 0.13 1.65 6.75 -82.96 -0.56 1.09 16 5 C 0.57 8.40 7.78 -12.13 -0.09 8.31 16 6 O -0.53 -9.03 15.94 5.36 0.09 -8.94 16 7 N -0.70 -9.81 5.06 -54.61 -0.28 -10.08 16 8 C 0.15 2.21 2.47 -67.93 -0.17 2.04 16 9 H 0.09 1.51 7.32 -51.93 -0.38 1.13 16 10 C -0.16 -2.01 9.29 37.16 0.35 -1.66 16 11 C -0.14 -2.39 3.67 -89.96 -0.33 -2.72 16 12 C 0.13 2.64 7.33 -8.50 -0.06 2.58 16 13 N -0.63 -15.82 3.69 -184.57 -0.68 -16.51 16 14 C -0.30 -8.92 11.08 -15.06 -0.17 -9.08 16 15 H 0.08 2.55 8.06 -52.49 -0.42 2.12 16 16 C -0.03 -0.77 5.50 -17.43 -0.10 -0.86 16 17 N -0.94 -30.13 13.70 55.49 0.76 -29.37 16 18 Si 1.07 27.77 25.16 -169.99 -4.28 23.49 16 19 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 20 H -0.29 -7.18 6.51 56.52 0.37 -6.82 16 21 H -0.29 -7.08 6.21 56.52 0.35 -6.72 16 22 C 0.10 2.23 5.27 -8.36 -0.04 2.18 16 23 N -0.45 -5.74 9.47 -7.54 -0.07 -5.81 16 24 C 0.13 1.45 6.61 -84.85 -0.56 0.89 16 25 C -0.08 -0.77 9.99 -39.41 -0.39 -1.17 16 26 C -0.10 -0.73 9.94 -39.94 -0.40 -1.13 16 27 C -0.11 -0.68 9.95 -39.89 -0.40 -1.08 16 28 C -0.10 -0.74 9.31 -39.51 -0.37 -1.10 16 29 C -0.09 -0.85 5.75 -106.71 -0.61 -1.47 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.30 6.51 -51.93 -0.34 -0.04 16 32 H 0.08 0.38 8.10 -51.93 -0.42 -0.04 16 33 H 0.15 1.56 7.60 -52.48 -0.40 1.16 16 34 H 0.41 5.35 7.91 -40.82 -0.32 5.03 16 35 H 0.07 0.86 7.48 -51.93 -0.39 0.47 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.10 1.62 8.14 -51.93 -0.42 1.19 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.04 0.74 8.10 -51.93 -0.42 0.32 16 41 H 0.26 8.26 8.73 -40.82 -0.36 7.91 16 42 H 0.05 0.98 7.44 -51.93 -0.39 0.59 16 43 H 0.05 1.17 4.73 -51.93 -0.25 0.92 16 44 H 0.14 1.17 8.06 -52.48 -0.42 0.74 16 45 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 46 H 0.13 0.47 8.06 -52.49 -0.42 0.04 16 47 H 0.13 0.61 6.44 -52.49 -0.34 0.27 16 LS Contribution 381.57 15.07 5.75 5.75 Total: -1.00 -35.65 381.57 -9.93 -45.58 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -6.68 Total: 2.09 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -4.54 Total: -6.20 kcal Atomic # 7 Polarization: -61.50 SS G_CDS: -0.27 Total: -61.77 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.09 Total: -8.94 kcal Atomic # 14 Polarization: 27.77 SS G_CDS: -4.28 Total: 23.49 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.65 -9.93 -45.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969985019.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.904 kcal (2) G-P(sol) polarization free energy of solvation -35.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds