Wall clock time and date at job start Sat Apr 11 2020 05:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39311 * 119.12290 * 2 1 4 4 C 1.36581 * 119.90876 * 180.02562 * 3 2 1 5 5 C 1.40884 * 118.15761 * 359.91947 * 4 3 2 6 6 C 1.40177 * 121.22695 * 180.08607 * 5 4 3 7 7 C 1.38545 * 119.40617 * 179.97438 * 6 5 4 8 8 C 1.47771 * 119.80619 * 180.02562 * 7 6 5 9 9 O 1.21570 * 119.99579 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00227 * 180.02562 * 8 7 6 11 11 C 1.46501 * 120.00022 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.47045 * 34.99609 * 11 10 8 13 13 C 1.53000 * 109.47136 * 274.99616 * 11 10 8 14 14 C 1.53004 * 109.47141 * 154.99914 * 11 10 8 15 15 C 1.53499 * 114.20194 * 295.68016 * 14 11 10 16 16 N 1.47073 * 87.98271 * 220.34656 * 15 14 11 17 17 C 1.36942 * 136.05527 * 207.08568 * 16 15 14 18 18 H 1.07994 * 120.00082 * 7.51165 * 17 16 15 19 19 C 1.38805 * 119.99575 * 187.50622 * 17 16 15 20 20 N 1.31620 * 120.00031 * 174.40324 * 19 17 16 21 21 Si 1.86807 * 120.00388 * 354.40343 * 19 17 16 22 22 H 1.48500 * 109.46966 * 174.95506 * 21 19 17 23 23 H 1.48493 * 109.47091 * 294.95681 * 21 19 17 24 24 H 1.48504 * 109.46855 * 54.95714 * 21 19 17 25 25 C 1.47068 * 87.88530 * 27.34485 * 16 15 14 26 26 C 1.40631 * 120.39265 * 0.26765 * 7 6 5 27 27 C 1.35699 * 120.91813 * 359.46420 * 26 7 6 28 28 C 1.40758 * 120.11222 * 0.51271 * 27 26 7 29 29 N 1.31126 * 119.11073 * 179.97438 * 2 1 3 30 30 H 1.08997 * 109.47155 * 270.02323 * 1 2 3 31 31 H 1.09002 * 109.46619 * 30.01846 * 1 2 3 32 32 H 1.09000 * 109.47380 * 150.02019 * 1 2 3 33 33 H 1.08000 * 120.04223 * 0.02562 * 3 2 1 34 34 H 1.07994 * 120.91683 * 179.97438 * 4 3 2 35 35 H 1.08003 * 120.29816 * 359.97438 * 6 5 4 36 36 H 0.97002 * 120.00125 * 359.97438 * 10 8 7 37 37 H 1.09006 * 109.46666 * 64.63553 * 13 11 10 38 38 H 1.08999 * 109.46923 * 184.63216 * 13 11 10 39 39 H 1.08998 * 109.47162 * 304.63827 * 13 11 10 40 40 H 1.08999 * 113.41397 * 68.87868 * 14 11 10 41 41 H 1.08997 * 113.46896 * 105.57052 * 15 14 11 42 42 H 1.09003 * 113.52350 * 335.12944 * 15 14 11 43 43 H 0.97005 * 119.99470 * 355.00821 * 20 19 17 44 44 H 1.08994 * 113.47031 * 87.43931 * 25 16 15 45 45 H 1.09002 * 113.46631 * 217.88470 * 25 16 15 46 46 H 1.07996 * 119.54032 * 179.72809 * 26 7 6 47 47 H 1.07998 * 119.94407 * 180.27718 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1850 1.2170 0.0000 4 6 3.5507 1.2357 -0.0005 5 6 4.2325 0.0029 0.0007 6 6 5.6332 -0.0530 0.0020 7 6 6.2648 -1.2861 0.0037 8 6 7.7409 -1.3553 0.0057 9 8 8.3973 -0.3320 0.0054 10 7 8.3594 -2.5527 0.0069 11 6 9.8228 -2.6212 0.0083 12 1 10.2246 -1.7970 0.5977 13 6 10.3395 -2.5203 -1.4283 14 6 10.2705 -3.9507 0.6190 15 6 9.8985 -4.1206 2.0985 16 7 11.2201 -4.7312 2.3070 17 6 11.7613 -5.6365 3.1804 18 1 11.1241 -6.1659 3.8732 19 6 13.1289 -5.8738 3.1752 20 7 13.6641 -6.6594 4.0855 21 14 14.2100 -5.0780 1.8761 22 1 15.6343 -5.3884 2.1595 23 1 13.8452 -5.6064 0.5371 24 1 14.0100 -3.6067 1.8990 25 6 11.7064 -3.9367 1.1689 26 6 5.5095 -2.4724 -0.0016 27 6 4.1530 -2.4353 0.0025 28 6 3.4804 -1.1989 0.0012 29 7 2.1449 -1.1456 0.0005 30 1 -0.3633 0.0004 1.0276 31 1 -0.3632 0.8899 -0.5141 32 1 -0.3634 -0.8901 -0.5135 33 1 1.6314 2.1443 0.0004 34 1 4.0928 2.1697 -0.0010 35 1 6.2148 0.8571 0.0017 36 1 7.8356 -3.3692 0.0068 37 1 10.0915 -1.5400 -1.8355 38 1 11.4213 -2.6536 -1.4355 39 1 9.8737 -3.2951 -2.0372 40 1 10.0350 -4.8143 -0.0031 41 1 9.0709 -4.8110 2.2615 42 1 9.7690 -3.1755 2.6258 43 1 13.1157 -7.0145 4.8026 44 1 12.0537 -2.9427 1.4503 45 1 12.4188 -4.4704 0.5398 46 1 6.0161 -3.4261 -0.0046 47 1 3.5886 -3.3561 0.0028 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970625593.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:18 Heat of formation + Delta-G solvation = 51.362616 kcal Electronic energy + Delta-G solvation = -28014.945233 eV Core-core repulsion = 24163.404712 eV Total energy + Delta-G solvation = -3851.540521 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 3.81 seconds Orbital eigenvalues (eV) -42.02588 -41.15761 -40.07445 -38.00182 -36.37560 -34.63315 -34.47815 -33.31180 -31.82809 -31.12998 -29.62631 -28.90519 -26.95011 -25.67584 -24.94338 -24.42298 -23.11355 -22.52853 -21.72699 -21.18431 -19.58575 -19.30139 -18.91075 -17.74626 -17.25183 -17.07818 -16.71468 -16.18040 -15.85342 -15.79371 -15.60789 -15.46309 -15.14353 -14.93508 -14.82859 -14.54260 -14.42921 -13.94474 -13.89096 -13.67806 -13.35868 -13.14199 -13.13313 -13.04454 -13.01476 -12.60691 -12.48308 -12.35863 -12.25978 -12.02292 -11.68434 -11.63041 -11.32675 -11.16023 -11.05615 -10.80695 -10.53858 -10.16870 -9.73979 -9.33126 -9.24071 -8.62929 -5.49268 -0.83372 -0.36918 0.84030 1.37063 1.38569 1.49376 1.67768 2.03287 2.25979 2.54419 2.96556 3.03002 3.14028 3.18073 3.43824 3.53088 3.64476 3.69399 3.81730 3.86309 3.96537 4.02639 4.19191 4.25270 4.28683 4.38396 4.48008 4.57350 4.64863 4.66301 4.73901 4.77515 4.79824 4.80613 4.84857 4.86685 4.93383 4.99632 5.04449 5.17340 5.18259 5.19285 5.24493 5.30033 5.41854 5.48054 5.53275 5.73911 5.93672 6.50550 6.68336 6.88173 7.15802 7.31155 8.25986 8.88491 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024819 B = 0.002083 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.908012 B =13440.954322 C =14046.002557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.159 3.841 3 C -0.174 4.174 4 C -0.048 4.048 5 C -0.136 4.136 6 C -0.025 4.025 7 C -0.149 4.149 8 C 0.560 3.440 9 O -0.576 6.576 10 N -0.703 5.703 11 C 0.160 3.840 12 H 0.071 0.929 13 C -0.155 4.155 14 C -0.104 4.104 15 C 0.126 3.874 16 N -0.662 5.662 17 C -0.292 4.292 18 H 0.049 0.951 19 C -0.087 4.087 20 N -0.970 5.970 21 Si 1.107 2.893 22 H -0.305 1.305 23 H -0.263 1.263 24 H -0.263 1.263 25 C 0.098 3.902 26 C -0.068 4.068 27 C -0.108 4.108 28 C 0.130 3.870 29 N -0.511 5.511 30 H 0.092 0.908 31 H 0.104 0.896 32 H 0.074 0.926 33 H 0.175 0.825 34 H 0.168 0.832 35 H 0.145 0.855 36 H 0.413 0.587 37 H 0.053 0.947 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.121 0.879 41 H 0.054 0.946 42 H 0.037 0.963 43 H 0.245 0.755 44 H 0.050 0.950 45 H 0.056 0.944 46 H 0.158 0.842 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.757 17.373 -15.498 36.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.007 3.993 3 C -0.193 4.193 4 C -0.074 4.074 5 C -0.139 4.139 6 C -0.045 4.045 7 C -0.152 4.152 8 C 0.349 3.651 9 O -0.457 6.457 10 N -0.354 5.354 11 C 0.055 3.945 12 H 0.089 0.911 13 C -0.214 4.214 14 C -0.124 4.124 15 C 0.001 3.999 16 N -0.390 5.390 17 C -0.420 4.420 18 H 0.067 0.933 19 C -0.279 4.279 20 N -0.616 5.616 21 Si 0.932 3.068 22 H -0.234 1.234 23 H -0.189 1.189 24 H -0.188 1.188 25 C -0.027 4.027 26 C -0.088 4.088 27 C -0.126 4.126 28 C 0.009 3.991 29 N -0.222 5.222 30 H 0.111 0.889 31 H 0.123 0.877 32 H 0.093 0.907 33 H 0.193 0.807 34 H 0.185 0.815 35 H 0.163 0.837 36 H 0.251 0.749 37 H 0.072 0.928 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.139 0.861 41 H 0.072 0.928 42 H 0.055 0.945 43 H 0.054 0.946 44 H 0.068 0.932 45 H 0.074 0.926 46 H 0.175 0.825 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -26.043 17.110 -15.893 34.980 hybrid contribution -0.965 -0.144 1.549 1.831 sum -27.009 16.967 -14.343 34.973 Atomic orbital electron populations 1.20928 0.86254 1.04860 1.04369 1.22267 0.98904 0.88242 0.89911 1.22132 0.94826 1.00275 1.02057 1.21942 0.95224 0.97440 0.92760 1.18972 0.94151 0.95325 1.05408 1.21536 0.92677 0.98106 0.92179 1.19894 0.92200 0.95098 1.07983 1.18409 0.87682 0.83474 0.75548 1.90756 1.67578 1.35411 1.51950 1.45839 1.07360 1.08387 1.73852 1.20814 0.79428 0.96510 0.97735 0.91064 1.22098 1.02194 1.02384 0.94689 1.23292 0.95832 0.97840 0.95433 1.22499 0.88537 0.95585 0.93317 1.46105 1.10411 1.46297 1.36192 1.20025 0.92660 1.15712 1.13561 0.93265 1.27127 0.96049 1.00494 1.04212 1.71026 1.37888 1.37492 1.15146 0.83309 0.73403 0.76354 0.73697 1.23359 1.18897 1.18839 1.22953 0.96494 0.94940 0.88342 1.21128 0.93677 0.97986 0.95992 1.20863 0.93993 0.96919 1.00840 1.19282 0.89657 0.93651 0.96550 1.67961 1.08299 1.30244 1.15667 0.88934 0.87729 0.90725 0.80739 0.81477 0.83683 0.74897 0.92814 0.90785 0.90551 0.86138 0.92781 0.94517 0.94573 0.93233 0.92581 0.82460 0.83012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.14 71.24 0.72 -0.04 16 2 C 0.16 2.25 6.78 42.92 0.29 2.54 16 3 C -0.17 -1.83 9.64 22.14 0.21 -1.62 16 4 C -0.05 -0.63 9.89 22.53 0.22 -0.41 16 5 C -0.14 -2.58 5.74 -21.29 -0.12 -2.71 16 6 C -0.03 -0.51 9.35 22.81 0.21 -0.30 16 7 C -0.15 -3.12 5.87 -20.10 -0.12 -3.24 16 8 C 0.56 14.01 7.73 86.76 0.67 14.68 16 9 O -0.58 -18.51 15.97 -3.94 -0.06 -18.57 16 10 N -0.70 -15.09 4.89 -445.46 -2.18 -17.27 16 11 C 0.16 4.03 2.35 44.99 0.11 4.13 16 12 H 0.07 2.14 7.41 -2.39 -0.02 2.12 16 13 C -0.16 -3.33 9.48 71.98 0.68 -2.65 16 14 C -0.10 -3.05 3.52 -10.37 -0.04 -3.09 16 15 C 0.13 4.62 8.12 83.18 0.68 5.30 16 16 N -0.66 -31.86 3.69 -737.83 -2.72 -34.58 16 17 C -0.29 -17.23 11.08 84.03 0.93 -16.30 16 18 H 0.05 3.14 8.06 -2.91 -0.02 3.11 16 19 C -0.09 -5.30 5.50 84.86 0.47 -4.83 16 20 N -0.97 -63.69 13.70 21.65 0.30 -63.39 16 21 Si 1.11 53.62 25.16 68.60 1.73 55.34 16 22 H -0.31 -15.23 7.11 99.48 0.71 -14.53 16 23 H -0.26 -11.37 6.51 99.48 0.65 -10.73 16 24 H -0.26 -11.60 6.21 99.48 0.62 -10.98 16 25 C 0.10 3.81 5.27 83.27 0.44 4.25 16 26 C -0.07 -1.14 9.44 22.27 0.21 -0.93 16 27 C -0.11 -1.95 9.95 22.30 0.22 -1.73 16 28 C 0.13 2.70 6.61 40.36 0.27 2.97 16 29 N -0.51 -10.30 10.23 -176.58 -1.81 -12.11 16 30 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.10 0.19 8.07 -2.39 -0.02 0.17 16 32 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.18 0.51 8.06 -2.91 -0.02 0.49 16 34 H 0.17 1.24 8.06 -2.91 -0.02 1.22 16 35 H 0.15 2.82 7.62 -2.91 -0.02 2.80 16 36 H 0.41 6.57 6.59 -92.71 -0.61 5.96 16 37 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 38 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.12 3.12 8.14 -2.39 -0.02 3.10 16 41 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.04 1.38 8.11 -2.39 -0.02 1.36 16 43 H 0.25 16.18 8.73 -92.70 -0.81 15.37 16 44 H 0.05 1.93 7.50 -2.39 -0.02 1.91 16 45 H 0.06 2.19 4.72 -2.39 -0.01 2.18 16 46 H 0.16 1.75 6.35 -2.91 -0.02 1.73 16 47 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -81.49 384.23 1.50 -79.98 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 0.20 Total: 14.56 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: 6.06 Total: -3.97 kcal Atomic # 7 Polarization: -120.93 SS G_CDS: -6.41 Total: -127.34 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -0.06 Total: -18.57 kcal Atomic # 14 Polarization: 53.62 SS G_CDS: 1.73 Total: 55.34 kcal Total: -81.49 1.50 -79.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970625593.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.347 kcal (2) G-P(sol) polarization free energy of solvation -81.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.82 seconds