Wall clock time and date at job start Sat Apr 11 2020 05:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.39232 * 119.15034 * 2 1 4 4 C 1.36636 * 119.90049 * 180.02562 * 3 2 1 5 5 C 1.40792 * 118.15439 * 0.02562 * 4 3 2 6 6 C 1.40474 * 121.25387 * 179.97438 * 5 4 3 7 7 C 1.36311 * 120.08955 * 180.02562 * 6 5 4 8 8 C 1.38912 * 121.05020 * 359.67516 * 7 6 5 9 9 C 1.38708 * 120.72981 * 0.62838 * 8 7 6 10 10 C 1.47434 * 120.33326 * 179.67902 * 9 8 7 11 11 O 1.21602 * 120.00300 * 198.43554 * 10 9 8 12 12 N 1.34780 * 120.00082 * 18.15683 * 10 9 8 13 13 C 1.47422 * 125.64910 * 172.85340 * 12 10 9 14 14 C 1.54909 * 104.83367 * 155.83439 * 13 12 10 15 15 C 1.55158 * 101.57700 * 37.01454 * 14 13 12 16 16 H 1.09002 * 110.72370 * 82.86189 * 15 14 13 17 17 N 1.46506 * 110.72137 * 205.95509 * 15 14 13 18 18 C 1.36930 * 120.00322 * 273.54622 * 17 15 14 19 19 H 1.07999 * 119.99705 * 359.97438 * 18 17 15 20 20 C 1.38808 * 120.00324 * 179.97438 * 18 17 15 21 21 N 1.31619 * 120.00050 * 180.02562 * 20 18 17 22 22 Si 1.86795 * 119.99935 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47545 * 89.99662 * 22 20 18 24 24 H 1.48505 * 109.47094 * 209.99998 * 22 20 18 25 25 H 1.48501 * 109.47247 * 329.99605 * 22 20 18 26 26 C 1.47021 * 125.64695 * 352.55201 * 12 10 9 27 27 H 1.08994 * 109.88136 * 300.51277 * 26 12 10 28 28 C 1.53000 * 109.88129 * 61.67604 * 26 12 10 29 29 C 1.41554 * 118.94778 * 359.97438 * 5 4 3 30 30 N 1.31231 * 119.15160 * 180.02562 * 2 1 3 31 31 H 1.08996 * 109.46953 * 90.00629 * 1 2 3 32 32 H 1.08999 * 109.46592 * 210.00120 * 1 2 3 33 33 H 1.08996 * 109.47150 * 330.00089 * 1 2 3 34 34 H 1.08004 * 120.04726 * 0.04144 * 3 2 1 35 35 H 1.07998 * 120.91991 * 179.97438 * 4 3 2 36 36 H 1.08008 * 119.95446 * 359.97438 * 6 5 4 37 37 H 1.08002 * 119.48012 * 180.02562 * 7 6 5 38 38 H 1.08006 * 119.63762 * 180.33224 * 8 7 6 39 39 H 1.08997 * 110.37408 * 274.67933 * 13 12 10 40 40 H 1.09001 * 110.36543 * 37.00043 * 13 12 10 41 41 H 1.08999 * 111.00735 * 155.07858 * 14 13 12 42 42 H 1.08991 * 111.00899 * 278.94480 * 14 13 12 43 43 H 0.97007 * 119.99779 * 93.54593 * 17 15 14 44 44 H 0.96997 * 120.00266 * 180.02562 * 21 20 18 45 45 H 1.09003 * 109.46903 * 76.97865 * 28 26 12 46 46 H 1.09002 * 109.46957 * 196.97045 * 28 26 12 47 47 H 1.08996 * 109.47488 * 316.97556 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1853 1.2160 0.0000 4 6 3.5515 1.2339 -0.0005 5 6 4.2320 0.0013 -0.0016 6 6 5.6356 -0.0562 -0.0028 7 6 6.2701 -1.2627 -0.0043 8 6 5.5503 -2.4508 0.0019 9 6 4.1633 -2.4392 -0.0032 10 6 3.4081 -3.7055 -0.0036 11 8 2.2399 -3.7166 -0.3408 12 7 4.0142 -4.8517 0.3644 13 6 3.3485 -6.1535 0.5527 14 6 4.4679 -7.2046 0.3480 15 6 5.6845 -6.4944 0.9982 16 1 5.6828 -6.6378 2.0787 17 7 6.9390 -6.9772 0.4153 18 6 7.5432 -8.0966 0.9219 19 1 7.0952 -8.6234 1.7515 20 6 8.7314 -8.5544 0.3693 21 7 9.3119 -9.6307 0.8560 22 14 9.5066 -7.6428 -1.0650 23 1 10.4354 -6.6056 -0.5487 24 1 10.2583 -8.6024 -1.9133 25 1 8.4423 -6.9958 -1.8737 26 6 5.4496 -5.0122 0.6386 27 1 6.0279 -4.7473 -0.2465 28 6 5.8572 -4.1232 1.8152 29 6 3.4788 -1.1972 -0.0016 30 7 2.1463 -1.1461 -0.0005 31 1 -0.3633 -0.0001 -1.0276 32 1 -0.3632 -0.8900 0.5139 33 1 -0.3633 0.8900 0.5138 34 1 1.6322 2.1437 0.0007 35 1 4.0943 2.1676 -0.0010 36 1 6.2128 0.8567 -0.0032 37 1 7.3496 -1.2955 -0.0048 38 1 6.0765 -3.3940 0.0060 39 1 2.9379 -6.2277 1.5596 40 1 2.5616 -6.2880 -0.1895 41 1 4.2328 -8.1324 0.8695 42 1 4.6431 -7.3876 -0.7120 43 1 7.3415 -6.5037 -0.3296 44 1 10.1424 -9.9504 0.4701 45 1 5.5311 -4.5831 2.7481 46 1 6.9412 -4.0090 1.8260 47 1 5.3898 -3.1442 1.7100 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986414739.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:27 Heat of formation + Delta-G solvation = 81.426813 kcal Electronic energy + Delta-G solvation = -29612.412526 eV Core-core repulsion = 25762.175686 eV Total energy + Delta-G solvation = -3850.236840 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.39882 -40.00453 -37.49794 -37.42964 -34.32384 -33.81983 -32.48662 -31.74167 -31.56023 -29.93140 -29.31875 -28.03561 -25.61789 -24.07606 -23.94867 -22.85610 -22.64115 -21.76188 -20.50328 -19.31478 -18.49707 -17.86376 -17.16797 -16.60218 -16.22958 -15.84065 -15.20946 -15.06296 -14.90310 -14.52001 -14.20461 -14.10366 -13.83187 -13.57781 -13.41142 -13.16900 -13.04344 -12.92707 -12.72731 -12.46455 -12.35318 -12.23834 -11.98942 -11.83835 -11.57516 -11.39107 -11.25974 -11.08674 -10.93593 -10.70128 -10.50494 -10.42030 -10.12046 -9.90615 -9.68172 -9.24059 -9.02725 -8.78327 -8.49692 -8.29756 -7.39882 -5.86287 -3.24218 -0.01089 0.61865 1.58295 2.57921 3.04773 3.21618 3.30116 3.31915 3.39375 3.97751 3.98794 4.25673 4.41260 4.49869 4.53216 4.60409 4.71475 4.75320 4.87989 4.98169 5.03918 5.06628 5.17213 5.27854 5.32293 5.38650 5.40731 5.48293 5.54305 5.64101 5.66320 5.68536 5.78259 5.80378 5.81482 5.87495 5.99291 6.00621 6.12341 6.15000 6.18931 6.27350 6.35403 6.46459 6.58561 6.60268 6.78598 7.68866 7.87251 7.89418 8.31587 8.40976 9.07823 9.80050 9.97742 11.31458 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018462 B = 0.003100 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.230443 B = 9029.957822 C =10106.811893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.157 3.843 3 C -0.178 4.178 4 C -0.054 4.054 5 C -0.123 4.123 6 C -0.069 4.069 7 C -0.134 4.134 8 C -0.073 4.073 9 C -0.121 4.121 10 C 0.573 3.427 11 O -0.509 6.509 12 N -0.610 5.610 13 C 0.109 3.891 14 C -0.155 4.155 15 C 0.183 3.817 16 H 0.077 0.923 17 N -0.739 5.739 18 C -0.247 4.247 19 H 0.093 0.907 20 C 0.009 3.991 21 N -0.930 5.930 22 Si 0.882 3.118 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.277 1.277 26 C 0.107 3.893 27 H 0.083 0.917 28 C -0.181 4.181 29 C 0.173 3.827 30 N -0.445 5.445 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.132 0.868 37 H 0.136 0.864 38 H 0.169 0.831 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.362 0.638 44 H 0.261 0.739 45 H 0.065 0.935 46 H 0.075 0.925 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.391 23.535 -0.609 26.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.005 3.995 3 C -0.198 4.198 4 C -0.079 4.079 5 C -0.125 4.125 6 C -0.088 4.088 7 C -0.152 4.152 8 C -0.092 4.092 9 C -0.124 4.124 10 C 0.362 3.638 11 O -0.384 6.384 12 N -0.345 5.345 13 C -0.014 4.014 14 C -0.196 4.196 15 C 0.072 3.928 16 H 0.095 0.905 17 N -0.382 5.382 18 C -0.377 4.377 19 H 0.110 0.890 20 C -0.187 4.187 21 N -0.577 5.577 22 Si 0.712 3.288 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.203 1.203 26 C 0.003 3.997 27 H 0.100 0.900 28 C -0.238 4.238 29 C 0.050 3.950 30 N -0.153 5.153 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.154 0.846 35 H 0.157 0.843 36 H 0.150 0.850 37 H 0.154 0.846 38 H 0.185 0.815 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.093 0.907 43 H 0.195 0.805 44 H 0.071 0.929 45 H 0.084 0.916 46 H 0.094 0.906 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.381 22.508 -0.668 25.697 hybrid contribution 1.333 1.381 -1.071 2.198 sum -11.048 23.889 -1.739 26.377 Atomic orbital electron populations 1.20773 0.88656 1.03578 1.03313 1.21673 0.97455 0.88098 0.92314 1.21733 0.95050 0.99300 1.03674 1.21432 0.94476 0.96969 0.95058 1.18782 0.94794 0.93927 1.05027 1.21167 0.92533 0.98707 0.96364 1.20928 1.00871 0.91856 1.01574 1.22891 0.93462 1.01494 0.91379 1.19743 0.93095 0.92269 1.07343 1.17514 0.86363 0.82019 0.77919 1.90807 1.15888 1.85512 1.46238 1.48416 1.08964 1.08955 1.68118 1.22261 0.96373 0.81674 1.01077 1.23539 0.95566 0.97786 1.02675 1.21268 0.86399 0.87635 0.97451 0.90529 1.42687 1.23971 1.32416 1.39086 1.19006 1.03582 1.01309 1.13801 0.88954 1.24663 0.97598 0.97440 0.99030 1.69690 1.19971 1.24353 1.43640 0.86605 0.79426 0.79477 0.83336 1.20922 1.21641 1.20282 1.22252 0.81301 0.98562 0.97566 0.90012 1.22826 1.02565 1.00010 0.98406 1.18525 0.89234 0.91300 0.95931 1.68102 1.07865 1.27818 1.11497 0.90139 0.90049 0.90707 0.84612 0.84300 0.84988 0.84629 0.81470 0.91690 0.90764 0.89970 0.90711 0.80512 0.92907 0.91554 0.90584 0.91054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 10.15 36.01 0.37 -0.56 16 2 C 0.16 1.86 6.78 -82.48 -0.56 1.30 16 3 C -0.18 -1.60 9.64 -39.79 -0.38 -1.98 16 4 C -0.05 -0.48 9.89 -39.20 -0.39 -0.87 16 5 C -0.12 -1.43 5.74 -106.83 -0.61 -2.04 16 6 C -0.07 -0.64 9.75 -39.43 -0.38 -1.03 16 7 C -0.13 -1.34 9.93 -40.03 -0.40 -1.73 16 8 C -0.07 -0.91 6.20 -39.16 -0.24 -1.15 16 9 C -0.12 -1.83 5.07 -104.61 -0.53 -2.36 16 10 C 0.57 9.97 7.56 -12.51 -0.09 9.87 16 11 O -0.51 -10.32 15.65 5.28 0.08 -10.24 16 12 N -0.61 -9.67 3.07 -164.28 -0.50 -10.18 16 13 C 0.11 1.65 6.95 -2.53 -0.02 1.64 16 14 C -0.15 -2.53 6.77 -24.58 -0.17 -2.70 16 15 C 0.18 3.20 3.10 -66.10 -0.21 3.00 16 16 H 0.08 1.36 7.55 -51.93 -0.39 0.97 16 17 N -0.74 -15.88 5.05 -51.65 -0.26 -16.14 16 18 C -0.25 -6.49 10.46 -15.06 -0.16 -6.64 16 19 H 0.09 2.61 8.06 -52.49 -0.42 2.18 16 20 C 0.01 0.25 5.50 -17.43 -0.10 0.16 16 21 N -0.93 -28.02 13.97 55.49 0.78 -27.24 16 22 Si 0.88 20.88 27.74 -169.99 -4.71 16.17 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 25 H -0.28 -6.15 6.52 56.52 0.37 -5.78 16 26 C 0.11 1.60 2.49 -66.96 -0.17 1.44 16 27 H 0.08 1.21 5.78 -51.93 -0.30 0.91 16 28 C -0.18 -2.36 7.79 37.16 0.29 -2.07 16 29 C 0.17 2.59 6.60 -84.58 -0.56 2.03 16 30 N -0.44 -6.95 8.51 -7.01 -0.06 -7.01 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.43 8.07 -51.93 -0.42 0.01 16 34 H 0.14 0.76 8.06 -52.48 -0.42 0.34 16 35 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 36 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 37 H 0.14 1.01 8.06 -52.49 -0.42 0.58 16 38 H 0.17 2.06 2.65 -52.48 -0.14 1.92 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.07 1.15 7.97 -51.93 -0.41 0.73 16 41 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 43 H 0.36 7.62 5.38 -40.82 -0.22 7.40 16 44 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 45 H 0.07 0.87 7.68 -51.93 -0.40 0.47 16 46 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.07 0.91 4.23 -51.93 -0.22 0.69 16 LS Contribution 371.85 15.07 5.60 5.60 Total: -1.00 -34.20 371.85 -9.70 -43.90 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -6.32 Total: 8.84 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -4.31 Total: -3.70 kcal Atomic # 7 Polarization: -60.52 SS G_CDS: -0.05 Total: -60.57 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.08 Total: -10.24 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.71 Total: 16.17 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.20 -9.70 -43.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986414739.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.330 kcal (2) G-P(sol) polarization free energy of solvation -34.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds