Wall clock time and date at job start Sat Apr 11 2020 05:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38760 * 119.84702 * 2 1 4 4 C 1.37768 * 120.62849 * 179.97438 * 3 2 1 5 5 C 1.39113 * 119.93380 * 0.02562 * 4 3 2 6 6 N 1.37970 * 133.18923 * 180.02562 * 5 4 3 7 7 H 0.96999 * 124.78270 * 0.02562 * 6 5 4 8 8 C 1.35469 * 110.42484 * 179.75055 * 6 5 4 9 9 C 1.36367 * 109.77154 * 0.41201 * 8 6 5 10 10 C 1.46912 * 126.76880 * 179.86930 * 9 8 6 11 11 O 1.21667 * 119.99793 * 155.87873 * 10 9 8 12 12 N 1.34772 * 119.99745 * 335.87345 * 10 9 8 13 13 C 1.46750 * 125.33816 * 354.31275 * 12 10 9 14 14 C 1.53981 * 106.68138 * 198.41245 * 13 12 10 15 15 H 1.09001 * 113.34917 * 94.43973 * 14 13 12 16 16 C 1.53677 * 109.30013 * 221.16481 * 14 13 12 17 17 N 1.46660 * 107.96732 * 93.06653 * 16 14 13 18 18 C 1.36941 * 125.32872 * 179.31560 * 17 16 14 19 19 H 1.07996 * 120.00172 * 353.85603 * 18 17 16 20 20 C 1.38814 * 119.99688 * 173.85231 * 18 17 16 21 21 N 1.31615 * 120.00230 * 4.73929 * 20 18 17 22 22 Si 1.86801 * 119.99808 * 184.73308 * 20 18 17 23 23 H 1.48503 * 109.47112 * 95.00378 * 22 20 18 24 24 H 1.48501 * 109.47059 * 215.00300 * 22 20 18 25 25 H 1.48494 * 109.47367 * 335.00354 * 22 20 18 26 26 C 1.46753 * 109.33509 * 359.28814 * 17 16 14 27 27 C 1.53981 * 106.67459 * 18.45652 * 26 17 16 28 28 H 1.08996 * 112.80365 * 94.13992 * 27 26 17 29 29 C 1.46665 * 125.33083 * 174.27191 * 12 10 9 30 30 C 1.40389 * 119.36423 * 359.97438 * 5 4 3 31 31 C 1.37752 * 119.84890 * 179.97438 * 2 1 3 32 32 H 1.09005 * 109.46837 * 90.00108 * 1 2 3 33 33 H 1.08998 * 109.47235 * 209.99887 * 1 2 3 34 34 H 1.08997 * 109.47371 * 330.00649 * 1 2 3 35 35 H 1.07992 * 119.68375 * 359.97438 * 3 2 1 36 36 H 1.08003 * 120.02475 * 179.97438 * 4 3 2 37 37 H 1.07999 * 125.11479 * 180.27862 * 8 6 5 38 38 H 1.08997 * 110.01952 * 79.10524 * 13 12 10 39 39 H 1.09002 * 110.01547 * 317.71798 * 13 12 10 40 40 H 1.08994 * 109.76911 * 212.69332 * 16 14 13 41 41 H 1.09002 * 109.76511 * 333.43596 * 16 14 13 42 42 H 0.97000 * 120.00629 * 179.97438 * 21 20 18 43 43 H 1.09000 * 110.01266 * 137.75444 * 26 17 16 44 44 H 1.08997 * 110.02016 * 259.14682 * 26 17 16 45 45 H 1.08988 * 109.76945 * 59.69848 * 29 12 10 46 46 H 1.09005 * 109.76598 * 298.95267 * 29 12 10 47 47 H 1.07996 * 120.16824 * 0.02575 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.2035 0.0000 4 6 3.5751 1.2223 0.0005 5 6 4.2857 0.0264 0.0005 6 7 5.6328 -0.2717 0.0014 7 1 6.3451 0.3867 0.0026 8 6 5.8202 -1.6133 0.0065 9 6 4.6131 -2.2477 -0.0001 10 6 4.3821 -3.6985 -0.0003 11 8 3.3342 -4.1478 0.4245 12 7 5.3309 -4.5318 -0.4712 13 6 6.5817 -4.1159 -1.1164 14 6 7.1087 -5.3393 -1.8887 15 1 6.8057 -5.3526 -2.9357 16 6 8.6319 -5.4359 -1.7089 17 7 8.8977 -6.3185 -0.5682 18 6 10.1398 -6.6614 -0.1048 19 1 11.0221 -6.3548 -0.6471 20 6 10.2650 -7.4030 1.0619 21 7 9.1905 -7.8561 1.6722 22 14 11.9585 -7.7580 1.7657 23 1 12.2892 -6.7416 2.7966 24 1 11.9650 -9.1089 2.3825 25 1 12.9677 -7.7059 0.6776 26 6 7.6240 -6.7760 -0.0007 27 6 6.5505 -6.5433 -1.0798 28 1 6.3728 -7.4246 -1.6959 29 6 5.2756 -5.9965 -0.4183 30 6 3.5854 -1.1904 0.0005 31 6 2.1926 -1.1948 0.0005 32 1 -0.3633 0.0000 -1.0277 33 1 -0.3633 -0.8900 0.5138 34 1 -0.3634 0.8900 0.5137 35 1 1.6500 2.1343 -0.0004 36 1 4.1027 2.1647 0.0001 37 1 6.7810 -2.1064 0.0125 38 1 7.3068 -3.8101 -0.3622 39 1 6.3904 -3.2935 -1.8057 40 1 9.0837 -5.8514 -2.6096 41 1 9.0434 -4.4458 -1.5129 42 1 9.2779 -8.3746 2.4873 43 1 7.6839 -7.8366 0.2433 44 1 7.3854 -6.1999 0.8933 45 1 4.3984 -6.3520 -0.9587 46 1 5.2283 -6.3264 0.6195 47 1 1.6529 -2.1302 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049243003.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:24 Heat of formation + Delta-G solvation = 55.446102 kcal Electronic energy + Delta-G solvation = -29205.396707 eV Core-core repulsion = 25354.033259 eV Total energy + Delta-G solvation = -3851.363448 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.57485 -39.91814 -37.91998 -37.48785 -34.92865 -32.51745 -32.13048 -31.52168 -30.55219 -29.51316 -28.79701 -26.57420 -25.60496 -25.53196 -23.65270 -22.84184 -21.65658 -21.09262 -20.21720 -19.32375 -18.97748 -17.88421 -16.91818 -16.68622 -16.15955 -15.62116 -15.36870 -14.93859 -14.68510 -14.57580 -14.25706 -14.09093 -13.79096 -13.72120 -13.53082 -13.31659 -13.01416 -12.65064 -12.59319 -12.27409 -12.01748 -11.77425 -11.76100 -11.64172 -11.40860 -11.33634 -11.05270 -10.94653 -10.84536 -10.46609 -10.12439 -10.09131 -9.87088 -9.81409 -9.62830 -9.58895 -8.65630 -8.30972 -8.29850 -7.81948 -6.87342 -5.74955 -3.12759 0.90798 1.41133 2.03087 2.83757 3.28223 3.36218 3.41539 3.43960 3.44884 3.83416 4.44411 4.51424 4.62904 4.68606 4.81934 4.83481 4.96890 5.10340 5.18304 5.23400 5.33064 5.44507 5.46095 5.50129 5.51500 5.58101 5.62510 5.68066 5.71871 5.83830 5.86846 5.97098 6.00347 6.18242 6.22255 6.26750 6.35207 6.43954 6.50982 6.52406 6.57251 6.59496 6.71318 6.81985 6.97250 7.23548 7.50803 7.56834 7.78731 7.83823 8.26345 8.50291 9.17002 9.77796 10.41511 11.33087 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020044 B = 0.002616 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.583646 B =10699.524023 C =11199.655909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.112 4.112 3 C -0.101 4.101 4 C -0.124 4.124 5 C 0.080 3.920 6 N -0.581 5.581 7 H 0.420 0.580 8 C 0.107 3.893 9 C -0.220 4.220 10 C 0.602 3.398 11 O -0.547 6.547 12 N -0.607 5.607 13 C 0.109 3.891 14 C -0.109 4.109 15 H 0.089 0.911 16 C 0.146 3.854 17 N -0.602 5.602 18 C -0.230 4.230 19 H 0.078 0.922 20 C -0.006 4.006 21 N -0.918 5.918 22 Si 0.912 3.088 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.175 3.825 27 C -0.123 4.123 28 H 0.093 0.907 29 C 0.123 3.877 30 C -0.058 4.058 31 C -0.064 4.064 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.125 0.875 36 H 0.121 0.879 37 H 0.185 0.815 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.025 0.975 41 H 0.024 0.976 42 H 0.253 0.747 43 H 0.085 0.915 44 H 0.023 0.977 45 H 0.060 0.940 46 H 0.073 0.927 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.330 17.393 -6.481 21.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.113 4.113 3 C -0.120 4.120 4 C -0.145 4.145 5 C -0.025 4.025 6 N -0.182 5.182 7 H 0.257 0.743 8 C -0.025 4.025 9 C -0.231 4.231 10 C 0.393 3.607 11 O -0.426 6.426 12 N -0.340 5.340 13 C -0.014 4.014 14 C -0.129 4.129 15 H 0.108 0.892 16 C 0.019 3.981 17 N -0.328 5.328 18 C -0.359 4.359 19 H 0.096 0.904 20 C -0.203 4.203 21 N -0.565 5.565 22 Si 0.742 3.258 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.206 1.206 26 C 0.050 3.950 27 C -0.143 4.143 28 H 0.111 0.889 29 C 0.001 3.999 30 C -0.063 4.063 31 C -0.082 4.082 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.143 0.857 36 H 0.139 0.861 37 H 0.202 0.798 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.043 0.957 41 H 0.042 0.958 42 H 0.064 0.936 43 H 0.103 0.897 44 H 0.041 0.959 45 H 0.078 0.922 46 H 0.091 0.909 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -11.758 17.148 -6.042 21.652 hybrid contribution 1.520 0.141 0.461 1.595 sum -10.238 17.289 -5.581 20.854 Atomic orbital electron populations 1.20713 0.91093 1.02623 1.02079 1.19694 0.96047 0.92578 1.02976 1.20664 0.92813 0.97537 1.00959 1.19964 0.93805 0.94595 1.06121 1.18247 0.83128 0.95318 1.05764 1.41559 1.06217 1.06911 1.63511 0.74308 1.22534 0.99696 0.82405 0.97887 1.19979 0.92113 0.92383 1.18626 1.16810 0.82411 0.84238 0.77290 1.90754 1.25726 1.77798 1.48309 1.48076 1.19793 1.07123 1.58995 1.22263 0.85591 0.97662 0.95858 1.22805 0.97192 0.94260 0.98629 0.89231 1.21070 0.90933 0.94195 0.91852 1.44253 1.02592 1.53100 1.32897 1.19032 0.83032 1.29073 1.04724 0.90433 1.24821 0.97379 1.00525 0.97566 1.69911 1.26239 1.40318 1.20082 0.86100 0.83238 0.77394 0.79023 1.21656 1.21698 1.20619 1.21415 0.81541 1.01650 0.90437 1.23238 0.95255 0.97051 0.98742 0.88894 1.21717 0.97826 0.78846 1.01543 1.18717 0.92950 0.90617 1.04000 1.20515 0.91755 0.98081 0.97859 0.91485 0.91522 0.91802 0.85747 0.86140 0.79846 0.91032 0.91352 0.95730 0.95812 0.93624 0.89741 0.95854 0.92152 0.90919 0.85180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 10.00 36.00 0.36 -0.54 16 2 C -0.11 -1.24 5.88 -104.61 -0.62 -1.85 16 3 C -0.10 -0.97 9.66 -39.56 -0.38 -1.35 16 4 C -0.12 -1.22 10.07 -39.43 -0.40 -1.62 16 5 C 0.08 0.95 7.26 -83.97 -0.61 0.34 16 6 N -0.58 -5.66 5.99 -10.49 -0.06 -5.72 16 7 H 0.42 2.55 8.96 -40.82 -0.37 2.19 16 8 C 0.11 1.26 10.14 -16.62 -0.17 1.09 16 9 C -0.22 -3.34 5.95 -103.31 -0.61 -3.95 16 10 C 0.60 10.70 7.77 -12.75 -0.10 10.60 16 11 O -0.55 -11.34 17.00 5.22 0.09 -11.25 16 12 N -0.61 -10.12 3.31 -173.79 -0.58 -10.69 16 13 C 0.11 1.59 4.43 -3.39 -0.02 1.58 16 14 C -0.11 -1.72 4.10 -88.47 -0.36 -2.08 16 15 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 16 C 0.15 2.75 6.58 -3.60 -0.02 2.72 16 17 N -0.60 -14.49 3.38 -171.89 -0.58 -15.07 16 18 C -0.23 -6.15 10.24 -15.06 -0.15 -6.30 16 19 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 20 C -0.01 -0.18 5.48 -17.43 -0.10 -0.27 16 21 N -0.92 -26.22 10.26 55.49 0.57 -25.65 16 22 Si 0.91 21.54 29.56 -169.99 -5.02 16.52 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 C 0.17 4.02 4.74 -3.39 -0.02 4.00 16 27 C -0.12 -2.18 4.10 -88.47 -0.36 -2.54 16 28 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 29 C 0.12 2.13 6.20 -3.60 -0.02 2.11 16 30 C -0.06 -0.85 6.29 -104.95 -0.66 -1.51 16 31 C -0.06 -0.88 9.63 -39.37 -0.38 -1.25 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 34 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 35 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 36 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 37 H 0.18 1.88 5.61 -52.49 -0.29 1.59 16 38 H 0.07 1.10 6.28 -51.93 -0.33 0.77 16 39 H 0.07 0.83 7.27 -51.93 -0.38 0.46 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.02 0.43 7.63 -51.93 -0.40 0.04 16 42 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.08 2.22 6.46 -51.93 -0.34 1.89 16 44 H 0.02 0.60 7.54 -51.93 -0.39 0.21 16 45 H 0.06 0.98 8.14 -51.94 -0.42 0.56 16 46 H 0.07 1.37 7.63 -51.93 -0.40 0.98 16 47 H 0.13 1.90 7.81 -52.49 -0.41 1.49 16 LS Contribution 373.63 15.07 5.63 5.63 Total: -1.00 -33.40 373.63 -11.21 -44.61 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -6.64 Total: 2.47 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: -4.62 Total: -0.84 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: -0.65 Total: -57.14 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.09 Total: -11.25 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.40 -11.21 -44.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049243003.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.052 kcal (2) G-P(sol) polarization free energy of solvation -33.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds