Wall clock time and date at job start Sat Apr 11 2020 05:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.35477 * 125.11186 * 2 1 4 4 H 0.97002 * 124.78769 * 0.02562 * 3 2 1 5 5 C 1.37960 * 110.42716 * 180.29876 * 3 2 1 6 6 C 1.39116 * 133.19138 * 179.70929 * 5 3 2 7 7 C 1.37761 * 119.93002 * 180.02562 * 6 5 3 8 8 C 1.38752 * 120.63901 * 0.02562 * 7 6 5 9 9 C 1.37757 * 120.29762 * 359.94226 * 8 7 6 10 10 C 1.39281 * 119.67310 * 0.07752 * 9 8 7 11 11 C 1.36369 * 125.12038 * 179.82167 * 2 1 3 12 12 C 1.46917 * 126.76593 * 359.97438 * 11 2 1 13 13 O 1.21667 * 119.99809 * 269.68337 * 12 11 2 14 14 N 1.34771 * 120.00211 * 89.68522 * 12 11 2 15 15 C 1.46494 * 119.99887 * 179.97438 * 14 12 11 16 16 H 1.08991 * 110.56316 * 32.09938 * 15 14 12 17 17 C 1.54855 * 110.62847 * 269.02452 * 15 14 12 18 18 C 1.56304 * 103.40860 * 241.38947 * 17 15 14 19 19 H 1.08991 * 115.71916 * 158.93443 * 18 17 15 20 20 C 1.55847 * 105.07834 * 288.42552 * 18 17 15 21 21 C 1.54218 * 103.56830 * 71.68773 * 20 18 17 22 22 C 1.55843 * 103.56317 * 0.02562 * 21 20 18 23 23 H 1.09003 * 116.13060 * 159.06782 * 22 21 20 24 24 N 1.50236 * 101.05340 * 32.84706 * 22 21 20 25 25 C 1.36941 * 130.83651 * 125.99271 * 24 22 21 26 26 H 1.07997 * 119.99783 * 342.74631 * 25 24 22 27 27 C 1.38806 * 119.99862 * 162.74191 * 25 24 22 28 28 N 1.31626 * 120.00127 * 337.98637 * 27 25 24 29 29 Si 1.86801 * 120.00093 * 157.97919 * 27 25 24 30 30 H 1.48501 * 109.47198 * 180.02562 * 29 27 25 31 31 H 1.48501 * 109.46714 * 60.00384 * 29 27 25 32 32 H 1.48494 * 109.47197 * 300.00670 * 29 27 25 33 33 H 1.08996 * 109.47207 * 270.17312 * 1 2 3 34 34 H 1.08999 * 109.47054 * 30.17926 * 1 2 3 35 35 H 1.09006 * 109.46645 * 150.17631 * 1 2 3 36 36 H 1.08004 * 120.03682 * 359.97438 * 6 5 3 37 37 H 1.08006 * 119.68197 * 180.02562 * 7 6 5 38 38 H 1.08000 * 119.85647 * 180.02562 * 8 7 6 39 39 H 1.08000 * 120.16678 * 180.02562 * 9 8 7 40 40 H 0.97008 * 119.99797 * 359.97438 * 14 12 11 41 41 H 1.08999 * 110.62274 * 359.97438 * 17 15 14 42 42 H 1.08997 * 110.63159 * 123.01755 * 17 15 14 43 43 H 1.09004 * 110.62907 * 190.09447 * 20 18 17 44 44 H 1.09006 * 110.62362 * 312.95036 * 20 18 17 45 45 H 1.09002 * 110.64963 * 241.43899 * 21 20 18 46 46 H 1.08996 * 110.49962 * 118.49541 * 21 20 18 47 47 H 0.97000 * 119.99592 * 353.96341 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2863 1.1082 0.0000 4 1 1.9529 2.0192 0.0004 5 6 3.6208 0.7585 -0.0067 6 6 4.7989 1.4983 -0.0147 7 6 6.0159 0.8527 -0.0208 8 6 6.0811 -0.5333 -0.0195 9 6 4.9257 -1.2834 -0.0110 10 6 3.6884 -0.6438 -0.0053 11 6 2.2916 -1.1154 0.0035 12 6 1.8348 -2.5118 0.0083 13 8 1.6516 -3.0882 1.0640 14 7 1.6187 -3.1542 -1.1565 15 6 1.1638 -4.5467 -1.1516 16 1 0.5345 -4.7408 -0.2831 17 6 2.3717 -5.5153 -1.1817 18 6 2.1697 -6.3052 -2.5152 19 1 3.0616 -6.7807 -2.9231 20 6 0.9524 -7.2419 -2.2512 21 6 -0.2483 -6.2746 -2.2195 22 6 0.3997 -4.8795 -2.4692 23 1 -0.2672 -4.0991 -2.8359 24 7 1.5380 -5.2489 -3.3774 25 6 1.8884 -4.7735 -4.6129 26 1 1.1713 -4.2216 -5.2024 27 6 3.1653 -5.0008 -5.1074 28 7 4.1537 -5.2677 -4.2801 29 14 3.4810 -4.9282 -6.9471 30 1 4.9152 -5.2058 -7.2146 31 1 3.1347 -3.5767 -7.4558 32 1 2.6441 -5.9449 -7.6335 33 1 -0.3633 0.0031 1.0276 34 1 -0.3633 0.8884 -0.5166 35 1 -0.3633 -0.8916 -0.5111 36 1 4.7596 2.5776 -0.0170 37 1 6.9281 1.4310 -0.0265 38 1 7.0420 -1.0263 -0.0239 39 1 4.9789 -2.3621 -0.0097 40 1 1.7645 -2.6945 -1.9982 41 1 3.3091 -4.9595 -1.2008 42 1 2.3424 -6.1923 -0.3280 43 1 0.8402 -7.9632 -3.0607 44 1 1.0621 -7.7537 -1.2950 45 1 -0.7385 -6.3021 -1.2463 46 1 -0.9548 -6.5171 -3.0133 47 1 4.0104 -5.2196 -3.3220 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097484813.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:11 Heat of formation + Delta-G solvation = 60.884361 kcal Electronic energy + Delta-G solvation = -29977.755707 eV Core-core repulsion = 26126.628080 eV Total energy + Delta-G solvation = -3851.127627 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.46298 -39.69796 -38.17333 -37.04613 -33.69034 -32.74584 -32.18402 -31.14294 -29.56712 -29.04318 -28.84986 -27.84520 -26.81347 -24.00101 -23.13350 -22.26882 -21.38341 -20.88066 -19.83008 -19.23980 -18.65235 -17.81487 -17.58212 -16.46233 -16.20241 -15.83493 -15.11982 -14.85860 -14.62015 -14.39962 -13.91212 -13.86193 -13.71698 -13.58544 -13.55330 -13.10388 -13.06565 -12.76311 -12.39468 -12.37054 -11.75261 -11.54914 -11.51207 -11.49676 -11.28431 -10.94376 -10.76800 -10.64343 -10.59787 -10.38789 -10.08265 -9.89173 -9.79550 -9.55351 -9.38241 -9.26963 -8.66460 -8.37826 -8.21552 -7.67186 -7.00503 -6.09817 -3.15923 1.07632 1.61445 2.41565 2.87618 3.00864 3.47731 3.51896 3.69464 3.81627 3.96644 4.51830 4.52562 4.69883 4.97852 4.99410 5.03057 5.18162 5.27360 5.32434 5.33446 5.45328 5.51050 5.52967 5.58481 5.67660 5.75919 5.80071 5.84477 5.88228 6.01070 6.04873 6.07973 6.15593 6.25570 6.35613 6.43590 6.50490 6.57725 6.60204 6.64529 6.67225 6.71857 6.82235 6.98144 7.11067 7.14378 7.26191 7.37856 7.56026 8.09937 8.37254 8.71962 8.95294 9.76156 10.45211 11.26824 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010279 B = 0.004149 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2723.242054 B = 6747.105397 C = 8057.593289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.123 3.877 3 N -0.583 5.583 4 H 0.415 0.585 5 C 0.092 3.908 6 C -0.130 4.130 7 C -0.101 4.101 8 C -0.140 4.140 9 C -0.066 4.066 10 C -0.069 4.069 11 C -0.213 4.213 12 C 0.591 3.409 13 O -0.550 6.550 14 N -0.696 5.696 15 C 0.127 3.873 16 H 0.081 0.919 17 C -0.140 4.140 18 C 0.141 3.859 19 H 0.108 0.892 20 C -0.134 4.134 21 C -0.125 4.125 22 C 0.127 3.873 23 H 0.089 0.911 24 N -0.594 5.594 25 C -0.320 4.320 26 H 0.064 0.936 27 C -0.026 4.026 28 N -0.922 5.922 29 Si 1.066 2.934 30 H -0.285 1.285 31 H -0.295 1.295 32 H -0.295 1.295 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.119 0.881 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.405 0.595 41 H 0.063 0.937 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.054 0.946 45 H 0.055 0.945 46 H 0.059 0.941 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.165 11.934 8.644 15.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.011 3.989 3 N -0.185 5.185 4 H 0.252 0.748 5 C -0.014 4.014 6 C -0.151 4.151 7 C -0.120 4.120 8 C -0.159 4.159 9 C -0.084 4.084 10 C -0.074 4.074 11 C -0.223 4.223 12 C 0.376 3.624 13 O -0.428 6.428 14 N -0.345 5.345 15 C 0.021 3.979 16 H 0.099 0.901 17 C -0.180 4.180 18 C 0.033 3.967 19 H 0.126 0.874 20 C -0.173 4.173 21 C -0.165 4.165 22 C 0.019 3.981 23 H 0.107 0.893 24 N -0.316 5.316 25 C -0.448 4.448 26 H 0.082 0.918 27 C -0.227 4.227 28 N -0.564 5.564 29 Si 0.896 3.104 30 H -0.211 1.211 31 H -0.222 1.222 32 H -0.222 1.222 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.106 0.894 36 H 0.137 0.863 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.240 0.760 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.078 0.922 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.146 11.471 7.974 14.320 hybrid contribution -1.172 0.989 0.739 1.703 sum -4.318 12.461 8.713 15.806 Atomic orbital electron populations 1.20563 0.87101 1.04152 1.03677 1.20204 0.93251 0.85001 1.00446 1.41334 1.04162 1.08004 1.65037 0.74772 1.18135 0.84264 0.93866 1.05108 1.19956 0.89666 0.98712 1.06746 1.20778 0.96495 0.94532 1.00163 1.20922 0.98018 0.93753 1.03169 1.20582 0.90354 1.00086 0.97389 1.18762 0.92072 0.91674 1.04897 1.19810 0.92014 0.92609 1.17904 1.17266 0.76644 0.84572 0.83956 1.90755 1.52524 1.68197 1.31372 1.46051 1.66473 1.13743 1.08227 1.22606 0.96256 0.79855 0.99225 0.90088 1.23498 0.98006 0.98125 0.98399 1.23134 0.95365 0.89249 0.88917 0.87431 1.22832 0.97101 0.97683 0.99679 1.22747 0.97396 0.96590 0.99735 1.23204 0.91300 0.94837 0.88797 0.89281 1.46547 1.29219 1.39195 1.16632 1.19693 0.97745 1.36475 0.90844 0.91781 1.25689 0.90581 1.00157 1.06309 1.70761 1.31754 1.49027 1.04845 0.83495 0.75939 0.75913 0.75022 1.21078 1.22201 1.22210 0.89859 0.90799 0.89384 0.86306 0.85704 0.85715 0.85831 0.75979 0.91779 0.92418 0.92551 0.92778 0.92644 0.92240 0.91643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.95 10.20 36.01 0.37 -0.58 16 2 C 0.12 1.60 7.12 -81.66 -0.58 1.02 16 3 N -0.58 -6.56 5.99 -6.78 -0.04 -6.60 16 4 H 0.42 3.07 8.96 -40.82 -0.37 2.70 16 5 C 0.09 1.26 7.26 -83.97 -0.61 0.65 16 6 C -0.13 -1.52 10.07 -39.43 -0.40 -1.92 16 7 C -0.10 -1.18 10.01 -39.57 -0.40 -1.57 16 8 C -0.14 -1.88 10.03 -39.57 -0.40 -2.28 16 9 C -0.07 -1.06 10.09 -39.37 -0.40 -1.46 16 10 C -0.07 -1.15 6.36 -104.95 -0.67 -1.82 16 11 C -0.21 -3.55 6.02 -103.31 -0.62 -4.17 16 12 C 0.59 11.09 7.16 -12.75 -0.09 10.99 16 13 O -0.55 -11.88 16.75 5.22 0.09 -11.79 16 14 N -0.70 -12.97 5.07 -52.60 -0.27 -13.23 16 15 C 0.13 2.42 2.81 -65.40 -0.18 2.23 16 16 H 0.08 1.52 7.22 -51.93 -0.38 1.15 16 17 C -0.14 -2.87 6.11 -23.98 -0.15 -3.02 16 18 C 0.14 3.11 3.84 -62.53 -0.24 2.87 16 19 H 0.11 2.70 6.54 -51.93 -0.34 2.36 16 20 C -0.13 -2.50 6.41 -24.57 -0.16 -2.65 16 21 C -0.12 -2.18 6.41 -24.58 -0.16 -2.33 16 22 C 0.13 2.47 5.06 -62.77 -0.32 2.15 16 23 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 24 N -0.59 -14.03 2.83 -145.48 -0.41 -14.44 16 25 C -0.32 -8.54 10.42 -15.06 -0.16 -8.70 16 26 H 0.06 1.71 7.92 -52.49 -0.42 1.29 16 27 C -0.03 -0.72 5.34 -17.43 -0.09 -0.81 16 28 N -0.92 -26.98 12.67 55.49 0.70 -26.28 16 29 Si 1.07 24.93 29.97 -169.99 -5.10 19.83 16 30 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 31 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 32 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.09 0.94 7.85 -51.93 -0.41 0.53 16 36 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 37 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 38 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 39 H 0.12 2.10 8.06 -52.49 -0.42 1.67 16 40 H 0.41 7.82 8.64 -40.82 -0.35 7.46 16 41 H 0.06 1.46 7.57 -51.93 -0.39 1.06 16 42 H 0.06 1.09 7.83 -51.93 -0.41 0.69 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.05 0.90 7.83 -51.93 -0.41 0.49 16 45 H 0.05 0.85 7.82 -51.93 -0.41 0.44 16 46 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.27 7.88 5.67 -40.82 -0.23 7.65 16 LS Contribution 382.11 15.07 5.76 5.76 Total: -1.00 -33.21 382.11 -11.21 -44.42 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: -6.70 Total: 13.75 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -5.24 Total: -11.41 kcal Atomic # 7 Polarization: -60.54 SS G_CDS: -0.02 Total: -60.56 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.09 Total: -11.79 kcal Atomic # 14 Polarization: 24.93 SS G_CDS: -5.10 Total: 19.83 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.21 -11.21 -44.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097484813.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.302 kcal (2) G-P(sol) polarization free energy of solvation -33.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds