Wall clock time and date at job start Sat Apr 11 2020 05:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46492 * 109.45738 * 2 1 4 4 C 1.36937 * 120.00300 * 59.99807 * 3 2 1 5 5 H 1.08000 * 119.99967 * 0.02562 * 4 3 2 6 6 C 1.38816 * 120.00049 * 179.97438 * 4 3 2 7 7 N 1.31618 * 119.99755 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 119.99815 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.46887 * 180.02562 * 8 6 4 10 10 H 1.48503 * 109.47238 * 300.00021 * 8 6 4 11 11 H 1.48499 * 109.47169 * 60.00467 * 8 6 4 12 12 C 1.53040 * 109.45743 * 119.97154 * 2 1 3 13 13 C 1.53170 * 109.32272 * 181.39013 * 12 2 1 14 14 N 1.46930 * 108.76647 * 305.34935 * 13 12 2 15 15 C 1.34768 * 120.63459 * 233.58922 * 14 13 12 16 16 O 1.21605 * 120.00445 * 174.22193 * 15 14 13 17 17 C 1.47435 * 120.00003 * 354.22424 * 15 14 13 18 18 C 1.38749 * 120.32900 * 306.15141 * 17 15 14 19 19 C 1.38865 * 120.72265 * 180.02562 * 18 17 15 20 20 C 1.36349 * 121.06028 * 0.02562 * 19 18 17 21 21 C 1.40441 * 120.08407 * 0.02562 * 20 19 18 22 22 C 1.40813 * 121.26190 * 180.02562 * 21 20 19 23 23 C 1.36643 * 118.14586 * 179.10868 * 22 21 20 24 24 C 1.39236 * 119.90812 * 0.87761 * 23 22 21 25 25 N 1.31234 * 121.69658 * 359.37178 * 24 23 22 26 26 C 1.33356 * 121.34887 * 0.02562 * 25 24 23 27 27 C 1.46935 * 118.73574 * 53.61440 * 14 13 12 28 28 C 1.53042 * 109.46041 * 240.02583 * 2 1 3 29 29 H 1.08989 * 109.47279 * 60.00611 * 1 2 3 30 30 H 1.09012 * 109.46739 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47073 * 300.00036 * 1 2 3 32 32 H 0.97003 * 119.99886 * 240.00558 * 3 2 1 33 33 H 0.96999 * 120.00246 * 359.97438 * 7 6 4 34 34 H 1.09004 * 109.49643 * 301.32172 * 12 2 1 35 35 H 1.08998 * 109.50209 * 61.42720 * 12 2 1 36 36 H 1.08995 * 109.58854 * 185.57030 * 13 12 2 37 37 H 1.08998 * 109.59460 * 65.13926 * 13 12 2 38 38 H 1.07997 * 119.64018 * 359.97438 * 18 17 15 39 39 H 1.07998 * 119.47019 * 180.02562 * 19 18 17 40 40 H 1.08004 * 119.95826 * 179.97438 * 20 19 18 41 41 H 1.07996 * 120.92841 * 359.95042 * 22 21 20 42 42 H 1.07999 * 120.04487 * 180.24465 * 23 22 21 43 43 H 1.08003 * 119.15532 * 179.38483 * 24 23 22 44 44 H 1.09002 * 109.58318 * 186.60119 * 27 14 13 45 45 H 1.08996 * 109.58643 * 66.17351 * 27 14 13 46 46 H 1.09003 * 109.49712 * 298.57973 * 28 2 1 47 47 H 1.09002 * 109.49298 * 58.64101 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6870 2.2244 1.0270 5 1 1.0665 1.8710 1.8372 6 6 2.1499 3.5331 1.0272 7 7 2.9065 3.9637 0.0400 8 14 1.6989 4.6830 2.4285 9 1 2.3131 6.0145 2.1934 10 1 0.2223 4.8248 2.4969 11 1 2.2024 4.1243 3.7089 12 6 2.0399 -0.7209 1.2500 13 6 3.5712 -0.6888 1.2646 14 7 4.0677 -1.2493 0.0004 15 6 4.9617 -2.2577 0.0005 16 8 5.2857 -2.7833 -1.0471 17 6 5.5470 -2.7239 1.2709 18 6 6.1658 -1.8257 2.1285 19 6 6.7202 -2.2559 3.3268 20 6 6.6727 -3.5684 3.6928 21 6 6.0568 -4.5114 2.8538 22 6 5.9931 -5.8729 3.2075 23 6 5.3626 -6.7322 2.3524 24 6 4.8221 -6.2545 1.1615 25 7 4.8889 -4.9854 0.8341 26 6 5.4801 -4.0937 1.6302 27 6 3.5714 -0.6890 -1.2640 28 6 2.0399 -0.7209 -1.2500 29 1 -0.3633 0.5137 -0.8899 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.5756 1.6987 -0.7276 33 1 3.1410 3.3664 -0.6874 34 1 1.6574 -0.2207 2.1398 35 1 1.6977 -1.7557 1.2383 36 1 3.9413 -1.2847 2.0988 37 1 3.9142 0.3407 1.3676 38 1 6.2176 -0.7807 1.8608 39 1 7.1967 -1.5392 3.9793 40 1 7.1101 -3.8836 4.6287 41 1 6.4187 -6.2258 4.1352 42 1 5.2925 -7.7822 2.5952 43 1 4.3352 -6.9461 0.4899 44 1 3.9418 -1.2851 -2.0981 45 1 3.9145 0.3404 -1.3671 46 1 1.6977 -1.7558 -1.2382 47 1 1.6569 -0.2212 -2.1398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673966780.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:52 Heat of formation + Delta-G solvation = 40.450420 kcal Electronic energy + Delta-G solvation = -30045.603056 eV Core-core repulsion = 26193.589346 eV Total energy + Delta-G solvation = -3852.013710 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.17759 -39.73964 -37.80723 -37.05172 -34.54191 -33.68282 -32.56314 -31.10205 -30.74759 -30.05659 -28.69566 -27.67545 -24.87323 -24.05019 -23.73481 -23.43750 -22.83635 -22.01601 -19.81971 -18.61182 -18.40306 -17.35357 -17.07156 -16.92645 -16.35458 -15.54930 -15.24564 -14.89410 -14.76867 -14.33110 -14.15073 -14.11272 -13.84212 -13.59561 -13.53158 -13.27954 -13.26292 -12.74299 -12.53074 -12.32280 -12.24559 -11.83180 -11.60306 -11.53338 -11.33276 -11.23504 -10.82770 -10.75499 -10.70747 -10.50239 -10.25111 -9.97604 -9.86450 -9.78124 -9.37076 -9.08583 -9.00691 -8.92494 -8.42591 -8.18431 -7.02685 -6.08573 -3.08886 0.04094 0.61110 1.63847 2.63978 2.98960 3.32313 3.49631 3.52607 3.70217 3.93582 4.08698 4.31458 4.50642 4.59749 4.65673 4.66502 4.76910 4.89989 5.10315 5.14960 5.24435 5.29987 5.36299 5.46792 5.56593 5.60513 5.65465 5.72651 5.73792 5.76995 5.80034 6.01384 6.03142 6.05033 6.11253 6.16436 6.22686 6.26281 6.37147 6.42306 6.47852 6.54775 6.57324 6.74554 6.81022 6.99326 7.04925 7.72594 7.81822 7.82138 8.45600 8.75901 9.22790 10.09448 10.25769 11.39214 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014696 B = 0.003457 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.787975 B = 8098.269409 C = 8902.736805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.203 3.797 3 N -0.728 5.728 4 C -0.321 4.321 5 H 0.064 0.936 6 C -0.044 4.044 7 N -0.945 5.945 8 Si 1.075 2.925 9 H -0.286 1.286 10 H -0.297 1.297 11 H -0.296 1.296 12 C -0.132 4.132 13 C 0.115 3.885 14 N -0.595 5.595 15 C 0.566 3.434 16 O -0.530 6.530 17 C -0.094 4.094 18 C -0.064 4.064 19 C -0.117 4.117 20 C -0.083 4.083 21 C -0.108 4.108 22 C -0.057 4.057 23 C -0.178 4.178 24 C 0.132 3.868 25 N -0.456 5.456 26 C 0.158 3.842 27 C 0.119 3.881 28 C -0.130 4.130 29 H 0.048 0.952 30 H 0.035 0.965 31 H 0.056 0.944 32 H 0.367 0.633 33 H 0.254 0.746 34 H 0.075 0.925 35 H 0.047 0.953 36 H 0.068 0.932 37 H 0.088 0.912 38 H 0.140 0.860 39 H 0.136 0.864 40 H 0.133 0.867 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.159 0.841 44 H 0.085 0.915 45 H 0.072 0.928 46 H 0.064 0.936 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.762 -19.291 7.866 21.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.112 3.888 3 N -0.372 5.372 4 C -0.452 4.452 5 H 0.082 0.918 6 C -0.242 4.242 7 N -0.591 5.591 8 Si 0.906 3.094 9 H -0.212 1.212 10 H -0.225 1.225 11 H -0.224 1.224 12 C -0.172 4.172 13 C -0.007 4.007 14 N -0.328 5.328 15 C 0.353 3.647 16 O -0.407 6.407 17 C -0.097 4.097 18 C -0.084 4.084 19 C -0.135 4.135 20 C -0.101 4.101 21 C -0.110 4.110 22 C -0.083 4.083 23 C -0.197 4.197 24 C -0.041 4.041 25 N -0.163 5.163 26 C 0.036 3.964 27 C -0.003 4.003 28 C -0.169 4.169 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.201 0.799 33 H 0.066 0.934 34 H 0.093 0.907 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.106 0.894 38 H 0.158 0.842 39 H 0.154 0.846 40 H 0.151 0.849 41 H 0.157 0.843 42 H 0.155 0.845 43 H 0.176 0.824 44 H 0.103 0.897 45 H 0.090 0.910 46 H 0.083 0.917 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.634 -17.638 7.278 19.895 hybrid contribution 0.153 -1.758 0.195 1.775 sum 5.787 -19.396 7.473 21.576 Atomic orbital electron populations 1.22190 0.97513 0.98982 1.02076 1.19458 0.92133 0.85646 0.91560 1.42516 1.61205 1.06684 1.26754 1.19913 1.29474 0.94407 1.01420 0.91793 1.25632 0.99162 0.95909 1.03507 1.70883 1.38978 1.37949 1.11256 0.83304 0.75363 0.76392 0.74322 1.21197 1.22450 1.22393 1.22261 0.94658 0.99071 1.01243 1.21799 0.95273 0.99692 0.83964 1.48009 1.42089 1.34356 1.08326 1.17871 0.79450 0.79212 0.88125 1.90756 1.61537 1.55895 1.32531 1.19829 1.02014 0.91910 0.95987 1.21505 0.94516 0.99849 0.92553 1.20878 0.99760 0.96215 0.96609 1.21110 0.97440 0.92845 0.98755 1.18790 1.01309 0.94882 0.96037 1.21466 0.95906 0.91686 0.99223 1.21911 1.00357 1.01329 0.96146 1.23064 0.94502 0.92095 0.94399 1.68085 1.14592 1.02524 1.31135 1.18533 0.95072 0.92428 0.90369 1.21538 0.94169 0.98851 0.85735 1.22100 0.94973 1.00624 0.99192 0.93262 0.94564 0.92508 0.79926 0.93432 0.90679 0.93410 0.91350 0.89429 0.84229 0.84604 0.84892 0.84268 0.84463 0.82372 0.89686 0.90968 0.91706 0.90915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 8.44 37.16 0.31 -2.41 16 2 C 0.20 3.86 0.74 -131.78 -0.10 3.77 16 3 N -0.73 -16.65 4.13 -47.19 -0.19 -16.84 16 4 C -0.32 -8.26 8.68 -15.06 -0.13 -8.39 16 5 H 0.06 1.64 6.70 -52.49 -0.35 1.29 16 6 C -0.04 -1.22 5.50 -17.43 -0.10 -1.32 16 7 N -0.95 -27.99 13.70 55.49 0.76 -27.23 16 8 Si 1.07 24.99 29.92 -169.99 -5.09 19.90 16 9 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 10 H -0.30 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.30 -6.55 7.11 56.52 0.40 -6.14 16 12 C -0.13 -2.36 4.70 -26.62 -0.13 -2.49 16 13 C 0.11 1.99 5.30 -3.72 -0.02 1.97 16 14 N -0.60 -10.53 2.97 -174.04 -0.52 -11.04 16 15 C 0.57 10.43 6.83 -12.52 -0.09 10.34 16 16 O -0.53 -11.30 16.19 5.27 0.09 -11.21 16 17 C -0.09 -1.48 4.64 -104.61 -0.49 -1.96 16 18 C -0.06 -0.82 7.74 -39.16 -0.30 -1.13 16 19 C -0.12 -1.17 9.93 -40.03 -0.40 -1.57 16 20 C -0.08 -0.78 9.75 -39.43 -0.38 -1.16 16 21 C -0.11 -1.25 5.74 -106.82 -0.61 -1.87 16 22 C -0.06 -0.50 9.90 -39.19 -0.39 -0.88 16 23 C -0.18 -1.50 10.03 -39.79 -0.40 -1.90 16 24 C 0.13 1.48 11.15 -17.44 -0.19 1.28 16 25 N -0.46 -7.10 9.55 -10.76 -0.10 -7.20 16 26 C 0.16 2.39 6.60 -84.58 -0.56 1.83 16 27 C 0.12 2.11 6.17 -3.71 -0.02 2.09 16 28 C -0.13 -2.24 4.96 -26.61 -0.13 -2.37 16 29 H 0.05 0.92 8.14 -51.94 -0.42 0.50 16 30 H 0.04 0.58 8.14 -51.92 -0.42 0.15 16 31 H 0.06 1.11 7.27 -51.93 -0.38 0.73 16 32 H 0.37 8.84 5.29 -40.82 -0.22 8.62 16 33 H 0.25 7.44 6.77 -40.82 -0.28 7.16 16 34 H 0.07 1.41 7.31 -51.93 -0.38 1.03 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 1.07 5.39 -51.93 -0.28 0.79 16 37 H 0.09 1.72 7.74 -51.93 -0.40 1.32 16 38 H 0.14 1.75 7.73 -52.49 -0.41 1.34 16 39 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 40 H 0.13 0.81 8.06 -52.48 -0.42 0.38 16 41 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 42 H 0.14 0.69 8.06 -52.49 -0.42 0.26 16 43 H 0.16 1.31 8.06 -52.48 -0.42 0.89 16 44 H 0.08 1.51 7.00 -51.93 -0.36 1.14 16 45 H 0.07 1.35 6.94 -51.93 -0.36 0.99 16 46 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 47 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 373.71 15.07 5.63 5.63 Total: -1.00 -33.81 373.71 -9.98 -43.79 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -6.44 Total: 10.38 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -4.12 Total: -6.17 kcal Atomic # 7 Polarization: -62.27 SS G_CDS: -0.05 Total: -62.32 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.09 Total: -11.21 kcal Atomic # 14 Polarization: 24.99 SS G_CDS: -5.09 Total: 19.90 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.81 -9.98 -43.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673966780.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.236 kcal (2) G-P(sol) polarization free energy of solvation -33.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds