Wall clock time and date at job start Sat Apr 11 2020 05:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39434 * 119.54446 * 2 1 4 4 C 1.35997 * 121.08521 * 180.02562 * 3 2 1 5 5 C 1.40824 * 119.74006 * 359.91231 * 4 3 2 6 6 N 1.33267 * 120.99878 * 180.08911 * 5 4 3 7 7 C 1.31878 * 121.29958 * 179.97438 * 6 5 4 8 8 C 1.48277 * 119.23597 * 179.97438 * 7 6 5 9 9 O 1.21503 * 119.99929 * 179.97438 * 8 7 6 10 10 N 1.34772 * 120.00314 * 0.02562 * 8 7 6 11 11 C 1.46506 * 120.00033 * 180.02562 * 10 8 7 12 12 H 1.08992 * 112.90684 * 336.24748 * 11 10 8 13 13 C 1.54049 * 113.61276 * 107.61836 * 11 10 8 14 14 C 1.53781 * 87.08031 * 89.07129 * 13 11 10 15 15 H 1.08999 * 113.61181 * 270.87794 * 14 13 11 16 16 C 1.52991 * 113.61611 * 139.97702 * 14 13 11 17 17 N 1.46508 * 109.47429 * 87.50116 * 16 14 13 18 18 C 1.36933 * 119.99805 * 180.02562 * 17 16 14 19 19 H 1.07994 * 120.00435 * 0.02562 * 18 17 16 20 20 C 1.38814 * 119.99531 * 179.97438 * 18 17 16 21 21 N 1.31618 * 119.99976 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00016 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47145 * 89.99897 * 22 20 18 24 24 H 1.48501 * 109.47005 * 209.99545 * 22 20 18 25 25 H 1.48500 * 109.47340 * 329.99647 * 22 20 18 26 26 C 1.53781 * 87.08070 * 25.42738 * 14 13 11 27 27 C 1.40278 * 121.52775 * 0.25312 * 7 6 5 28 28 C 1.36505 * 119.80780 * 359.50355 * 27 7 6 29 29 C 1.40758 * 118.24524 * 0.45965 * 28 27 7 30 30 C 1.36136 * 119.54114 * 179.97438 * 2 1 3 31 31 H 1.08996 * 109.47671 * 270.02720 * 1 2 3 32 32 H 1.09008 * 109.46775 * 30.02527 * 1 2 3 33 33 H 1.08999 * 109.47375 * 150.02491 * 1 2 3 34 34 H 1.08002 * 119.45677 * 359.97438 * 3 2 1 35 35 H 1.08000 * 120.13029 * 179.97438 * 4 3 2 36 36 H 0.97002 * 120.00078 * 359.97438 * 10 8 7 37 37 H 1.09005 * 113.62125 * 334.52173 * 13 11 10 38 38 H 1.09003 * 113.61268 * 203.61961 * 13 11 10 39 39 H 1.08997 * 109.47550 * 207.50008 * 16 14 13 40 40 H 1.09002 * 109.47334 * 327.50277 * 16 14 13 41 41 H 0.96996 * 119.99136 * 0.02562 * 17 16 14 42 42 H 0.97002 * 120.00315 * 179.97438 * 21 20 18 43 43 H 1.09002 * 113.61445 * 89.11830 * 26 14 13 44 44 H 1.09002 * 113.61408 * 219.93560 * 26 14 13 45 45 H 1.07997 * 120.09540 * 179.74316 * 27 7 6 46 46 H 1.07996 * 120.87829 * 180.24241 * 28 27 7 47 47 H 1.07998 * 120.17744 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.2130 0.0000 4 6 3.5540 1.2496 -0.0005 5 6 4.2852 0.0461 0.0008 6 7 5.6179 0.0526 0.0021 7 6 6.3085 -1.0708 0.0039 8 6 7.7901 -1.0101 0.0047 9 8 8.4401 -2.0366 0.0067 10 7 8.4156 0.1836 0.0042 11 6 9.8795 0.2435 0.0044 12 1 10.3408 -0.6571 0.4094 13 6 10.4788 0.6949 -1.3410 14 6 10.3655 2.1366 -0.8181 15 1 9.4091 2.6086 -1.0428 16 6 11.5635 3.0161 -1.1811 17 7 11.3420 3.6252 -2.4951 18 6 12.2871 4.4582 -3.0317 19 1 13.1959 4.6659 -2.4866 20 6 12.0774 5.0347 -4.2769 21 7 12.9855 5.8358 -4.7925 22 14 10.5057 4.6748 -5.2201 23 1 9.4707 5.6763 -4.8579 24 1 10.7759 4.7476 -6.6785 25 1 10.0209 3.3146 -4.8737 26 6 10.4426 1.5450 0.5993 27 6 5.6741 -2.3219 -0.0009 28 6 4.3108 -2.3914 0.0028 29 6 3.5824 -1.1870 0.0014 30 6 2.1782 -1.1844 0.0005 31 1 -0.3634 0.0005 1.0276 32 1 -0.3633 0.8898 -0.5143 33 1 -0.3634 -0.8902 -0.5134 34 1 1.6383 2.1388 -0.0004 35 1 4.0708 2.1979 -0.0009 36 1 7.8967 1.0031 0.0029 37 1 9.8357 0.4889 -2.1967 38 1 11.5065 0.3653 -1.4937 39 1 11.6791 3.7998 -0.4324 40 1 12.4663 2.4061 -1.2110 41 1 10.5258 3.4382 -2.9848 42 1 12.8392 6.2385 -5.6628 43 1 11.4604 1.4479 0.9771 44 1 9.7713 2.0264 1.3104 45 1 6.2625 -3.2275 -0.0035 46 1 3.8045 -3.3453 0.0032 47 1 1.6336 -2.1170 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675767168.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:58 Heat of formation + Delta-G solvation = 49.747904 kcal Electronic energy + Delta-G solvation = -27641.270782 eV Core-core repulsion = 23789.660242 eV Total energy + Delta-G solvation = -3851.610540 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.44769 -40.16901 -38.61705 -37.51547 -34.73825 -34.10515 -33.23244 -32.39490 -31.09812 -30.71158 -28.15673 -27.04892 -25.56171 -24.83137 -24.02245 -22.97246 -22.51083 -21.36739 -21.18663 -19.22957 -18.45158 -18.27478 -17.48602 -17.21775 -16.00934 -15.88715 -15.51924 -15.02500 -14.84289 -14.66593 -14.58649 -14.45842 -14.26223 -14.04251 -13.79248 -13.56849 -13.50537 -13.34196 -12.84279 -12.62054 -12.45634 -12.29219 -12.01520 -11.91000 -11.81154 -11.65530 -11.38345 -11.04540 -10.87546 -10.69284 -10.46837 -10.21334 -10.14444 -9.94584 -9.83398 -9.54571 -9.20752 -9.04381 -8.83621 -8.65695 -7.17561 -5.73235 -3.07816 -0.23960 0.24289 1.48595 2.03970 2.83738 2.90050 3.40314 3.43722 3.47740 3.64507 3.70076 4.07006 4.23949 4.25438 4.44208 4.53400 4.62367 4.62782 4.65328 4.70372 4.81080 4.97131 5.01819 5.03133 5.05947 5.07833 5.29474 5.35275 5.47941 5.56822 5.57606 5.62993 5.66863 5.72264 5.82185 5.87352 5.88593 5.98689 6.00540 6.03796 6.14612 6.16329 6.28887 6.34102 6.55876 6.73110 6.86242 7.16478 7.45760 7.99268 8.03896 8.46277 9.26007 9.98692 10.19152 11.45376 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011591 B = 0.002390 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.147272 B =11712.928646 C =13369.219848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.073 4.073 3 C -0.102 4.102 4 C -0.079 4.079 5 C 0.120 3.880 6 N -0.440 5.440 7 C 0.116 3.884 8 C 0.571 3.429 9 O -0.531 6.531 10 N -0.687 5.687 11 C 0.112 3.888 12 H 0.103 0.897 13 C -0.140 4.140 14 C -0.119 4.119 15 H 0.087 0.913 16 C 0.167 3.833 17 N -0.756 5.756 18 C -0.242 4.242 19 H 0.090 0.910 20 C 0.002 3.998 21 N -0.936 5.936 22 Si 0.885 3.115 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.277 1.277 26 C -0.135 4.135 27 C -0.123 4.123 28 C -0.064 4.064 29 C -0.081 4.081 30 C -0.107 4.107 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.133 0.867 35 H 0.141 0.859 36 H 0.412 0.588 37 H 0.067 0.933 38 H 0.095 0.905 39 H 0.027 0.973 40 H 0.029 0.971 41 H 0.360 0.640 42 H 0.259 0.741 43 H 0.098 0.902 44 H 0.071 0.929 45 H 0.151 0.849 46 H 0.146 0.854 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.640 -16.938 14.553 34.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.073 4.073 3 C -0.122 4.122 4 C -0.098 4.098 5 C -0.004 4.004 6 N -0.152 5.152 7 C -0.038 4.038 8 C 0.355 3.645 9 O -0.407 6.407 10 N -0.337 5.337 11 C 0.007 3.993 12 H 0.121 0.879 13 C -0.179 4.179 14 C -0.138 4.138 15 H 0.105 0.895 16 C 0.040 3.960 17 N -0.401 5.401 18 C -0.372 4.372 19 H 0.107 0.893 20 C -0.194 4.194 21 N -0.584 5.584 22 Si 0.715 3.285 23 H -0.211 1.211 24 H -0.218 1.218 25 H -0.203 1.203 26 C -0.174 4.174 27 C -0.143 4.143 28 C -0.090 4.090 29 C -0.084 4.084 30 C -0.126 4.126 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.151 0.849 35 H 0.159 0.841 36 H 0.248 0.752 37 H 0.085 0.915 38 H 0.113 0.887 39 H 0.045 0.955 40 H 0.047 0.953 41 H 0.193 0.807 42 H 0.069 0.931 43 H 0.116 0.884 44 H 0.090 0.910 45 H 0.169 0.831 46 H 0.164 0.836 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -25.546 -16.675 14.532 33.791 hybrid contribution -1.744 -0.475 -0.917 2.027 sum -27.290 -17.150 13.615 34.989 Atomic orbital electron populations 1.20880 0.90566 1.03302 1.02759 1.19800 0.96684 0.92968 0.97808 1.20870 0.93977 0.97995 0.99399 1.20920 0.93611 0.97016 0.98216 1.18824 0.88769 0.93038 0.99778 1.67802 1.07652 1.29820 1.09883 1.21332 0.94236 0.89658 0.98570 1.17881 0.85670 0.84089 0.76818 1.90785 1.65900 1.33915 1.50054 1.45546 1.07101 1.08540 1.72546 1.22077 0.79127 0.99609 0.98439 0.87882 1.23503 1.01823 0.96091 0.96472 1.22820 1.00461 0.95388 0.95133 0.89486 1.20618 0.93949 0.93700 0.87754 1.42709 1.22091 1.56933 1.18358 1.19081 0.99076 1.18427 1.00584 0.89258 1.24678 0.97771 0.99476 0.97435 1.69704 1.34636 1.35326 1.18729 0.86533 0.84313 0.77942 0.79691 1.21142 1.21786 1.20332 1.23292 1.02020 0.94976 0.97078 1.21749 0.95135 0.98863 0.98588 1.21459 0.93668 0.97852 0.96058 1.18956 0.94884 0.93957 1.00555 1.20845 0.92062 0.98416 1.01229 0.90682 0.91059 0.91203 0.84920 0.84109 0.75156 0.91453 0.88685 0.95489 0.95349 0.80726 0.93128 0.88351 0.91030 0.83084 0.83615 0.85003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.43 9.98 36.00 0.36 -0.08 16 2 C -0.07 -0.45 5.85 -104.93 -0.61 -1.07 16 3 C -0.10 -0.69 9.58 -39.94 -0.38 -1.08 16 4 C -0.08 -0.69 9.99 -39.41 -0.39 -1.08 16 5 C 0.12 1.26 6.61 -84.85 -0.56 0.70 16 6 N -0.44 -5.20 9.47 -7.54 -0.07 -5.27 16 7 C 0.12 1.39 6.75 -82.95 -0.56 0.83 16 8 C 0.57 7.69 7.81 -12.13 -0.09 7.60 16 9 O -0.53 -8.36 15.88 5.36 0.09 -8.27 16 10 N -0.69 -8.55 5.25 -53.68 -0.28 -8.83 16 11 C 0.11 1.42 4.34 -66.97 -0.29 1.13 16 12 H 0.10 1.33 7.46 -51.93 -0.39 0.94 16 13 C -0.14 -2.03 7.44 -25.78 -0.19 -2.22 16 14 C -0.12 -1.79 3.63 -89.81 -0.33 -2.11 16 15 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 16 C 0.17 3.22 6.10 -4.04 -0.02 3.20 16 17 N -0.76 -18.34 5.41 -59.91 -0.32 -18.66 16 18 C -0.24 -7.00 10.47 -15.06 -0.16 -7.16 16 19 H 0.09 2.76 8.06 -52.49 -0.42 2.33 16 20 C 0.00 0.06 5.50 -17.43 -0.10 -0.04 16 21 N -0.94 -29.93 13.97 55.49 0.78 -29.15 16 22 Si 0.88 22.65 27.74 -169.99 -4.71 17.94 16 23 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 25 H -0.28 -6.73 6.52 56.52 0.37 -6.36 16 26 C -0.14 -1.60 7.38 -25.92 -0.19 -1.79 16 27 C -0.12 -1.21 9.54 -39.44 -0.38 -1.59 16 28 C -0.06 -0.51 9.88 -39.26 -0.39 -0.90 16 29 C -0.08 -0.73 5.75 -106.71 -0.61 -1.34 16 30 C -0.11 -0.72 9.37 -39.52 -0.37 -1.09 16 31 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.07 0.22 8.08 -51.92 -0.42 -0.20 16 33 H 0.07 0.20 8.07 -51.93 -0.42 -0.22 16 34 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 35 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.41 4.77 8.00 -40.82 -0.33 4.44 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.09 1.37 7.90 -51.93 -0.41 0.96 16 39 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.03 0.56 7.84 -51.93 -0.41 0.15 16 41 H 0.36 8.59 5.53 -40.82 -0.23 8.36 16 42 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 43 H 0.10 1.08 8.10 -51.93 -0.42 0.66 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.15 1.35 7.60 -52.49 -0.40 0.95 16 46 H 0.15 0.66 8.06 -52.49 -0.42 0.24 16 47 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 LS Contribution 392.31 15.07 5.91 5.91 Total: -1.00 -35.12 392.31 -10.70 -45.82 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -6.81 Total: 8.60 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -5.27 Total: -8.09 kcal Atomic # 7 Polarization: -62.00 SS G_CDS: 0.10 Total: -61.91 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: 0.09 Total: -8.27 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -4.71 Total: 17.94 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.12 -10.70 -45.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675767168.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.573 kcal (2) G-P(sol) polarization free energy of solvation -35.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds