Wall clock time and date at job start Sat Apr 11 2020 05:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.35836 * 126.46045 * 2 1 4 4 H 0.96996 * 124.92000 * 359.97438 * 3 2 1 5 5 N 1.28459 * 110.16975 * 180.02562 * 3 2 1 6 6 C 1.31933 * 110.20795 * 0.02562 * 5 3 2 7 7 C 1.47528 * 126.45986 * 179.97438 * 6 5 3 8 8 O 1.21593 * 120.00046 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99944 * 359.74786 * 7 6 5 10 10 C 1.46499 * 120.00195 * 180.27864 * 9 7 6 11 11 C 1.52990 * 109.47304 * 179.97438 * 10 9 7 12 12 C 1.53009 * 109.47205 * 179.97438 * 11 10 9 13 13 N 1.46896 * 109.47064 * 179.97438 * 12 11 10 14 14 C 1.46897 * 111.00445 * 66.04108 * 13 12 11 15 15 C 1.46897 * 110.99826 * 189.99853 * 13 12 11 16 16 C 1.50707 * 109.47383 * 169.99744 * 15 13 12 17 17 O 1.21291 * 119.99622 * 0.02562 * 16 15 13 18 18 N 1.34768 * 120.00180 * 180.02562 * 16 15 13 19 19 C 1.37101 * 119.99784 * 180.02562 * 18 16 15 20 20 H 1.07997 * 120.00198 * 0.02562 * 19 18 16 21 21 C 1.38956 * 119.99951 * 179.97438 * 19 18 16 22 22 N 1.31415 * 119.99725 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00111 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46716 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.46985 * 120.00128 * 23 21 19 26 26 H 1.48498 * 109.46801 * 240.00244 * 23 21 19 27 27 C 1.35785 * 126.46210 * 180.35325 * 2 1 3 28 28 O 1.36091 * 127.26438 * 359.97438 * 27 2 1 29 29 H 1.09007 * 109.47300 * 89.97130 * 1 2 3 30 30 H 1.08994 * 109.47373 * 209.97005 * 1 2 3 31 31 H 1.08999 * 109.47452 * 329.97451 * 1 2 3 32 32 H 0.97000 * 119.99736 * 0.27136 * 9 7 6 33 33 H 1.08998 * 109.46795 * 299.99885 * 10 9 7 34 34 H 1.09002 * 109.47196 * 59.99076 * 10 9 7 35 35 H 1.09006 * 109.47037 * 299.99466 * 11 10 9 36 36 H 1.08997 * 109.47401 * 59.99831 * 11 10 9 37 37 H 1.08992 * 109.46730 * 299.99570 * 12 11 10 38 38 H 1.08997 * 109.47029 * 59.99665 * 12 11 10 39 39 H 1.09011 * 109.46783 * 60.00025 * 14 13 12 40 40 H 1.08996 * 109.47597 * 179.97438 * 14 13 12 41 41 H 1.09000 * 109.47253 * 300.00202 * 14 13 12 42 42 H 1.08998 * 109.47315 * 289.99997 * 15 13 12 43 43 H 1.09007 * 109.47373 * 50.00201 * 15 13 12 44 44 H 0.96999 * 120.00485 * 359.97438 * 18 16 15 45 45 H 0.97000 * 119.99724 * 179.97438 * 22 21 19 46 46 H 0.96698 * 113.99587 * 270.17161 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.3142 1.0925 0.0000 4 1 2.0045 2.0117 -0.0004 5 7 3.5472 0.7321 -0.0005 6 6 3.6373 -0.5841 -0.0015 7 6 4.8810 -1.3777 -0.0028 8 8 4.8270 -2.5924 -0.0041 9 7 6.0769 -0.7563 -0.0084 10 6 7.3119 -1.5443 -0.0159 11 6 8.5177 -0.6026 -0.0217 12 6 9.8075 -1.4257 -0.0290 13 7 10.9652 -0.5216 -0.0352 14 6 11.0443 0.2412 1.2177 15 6 12.2101 -1.2620 -0.2803 16 6 13.3342 -0.2882 -0.5237 17 8 13.1195 0.9052 -0.4953 18 7 14.5780 -0.7434 -0.7729 19 6 15.6007 0.1425 -0.9939 20 1 15.4097 1.2052 -0.9678 21 6 16.8832 -0.3268 -1.2503 22 7 17.1157 -1.6198 -1.2816 23 14 18.2766 0.8803 -1.5521 24 1 17.7564 2.2684 -1.4648 25 1 19.3337 0.6819 -0.5282 26 1 18.8469 0.6499 -2.9037 27 6 2.3139 -1.0920 -0.0067 28 8 1.9325 -2.3984 -0.0143 29 1 -0.3634 0.0005 -1.0277 30 1 -0.3634 -0.8902 0.5133 31 1 -0.3634 0.8897 0.5142 32 1 6.1199 0.2128 -0.0075 33 1 7.3464 -2.1739 0.8731 34 1 7.3370 -2.1719 -0.9068 35 1 8.4829 0.0267 -0.9111 36 1 8.4927 0.0252 0.8689 37 1 9.8420 -2.0546 0.8605 38 1 9.8327 -2.0538 -0.9194 39 1 11.1433 -0.4476 2.0568 40 1 11.9105 0.9022 1.1867 41 1 10.1382 0.8346 1.3397 42 1 12.4440 -1.8771 0.5886 43 1 12.0868 -1.9006 -1.1550 44 1 14.7498 -1.6978 -0.7953 45 1 18.0109 -1.9474 -1.4610 46 1 1.8201 -2.7803 0.8669 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689797178.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:12 Heat of formation + Delta-G solvation = -36.491005 kcal Electronic energy + Delta-G solvation = -27831.441842 eV Core-core repulsion = 23565.242439 eV Total energy + Delta-G solvation = -4266.199403 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.17572 -39.60222 -38.62879 -37.60995 -36.87046 -35.14636 -33.83561 -33.26204 -31.84170 -31.24789 -31.04609 -27.86766 -27.42772 -26.63523 -25.01114 -24.06172 -22.43694 -21.79534 -21.06923 -20.09493 -19.11559 -18.73831 -17.81691 -17.62324 -17.24335 -16.43755 -16.34115 -15.92491 -15.72414 -15.10919 -14.85346 -14.62421 -14.60290 -14.33169 -14.19126 -14.04210 -13.63832 -13.53820 -13.35995 -13.26639 -13.13059 -12.28249 -12.15653 -12.09321 -11.83778 -11.65906 -11.45355 -11.23181 -11.20321 -10.90338 -10.85971 -10.67375 -10.32368 -10.28855 -10.19731 -9.86480 -9.46057 -9.26835 -9.18924 -8.41750 -7.94797 -7.81442 -6.39207 -3.79835 1.07434 1.39668 2.19818 2.84837 3.07357 3.18079 3.28463 3.35681 3.74499 3.93897 4.02778 4.10622 4.17852 4.27451 4.47842 4.85667 4.87887 4.88595 5.04252 5.10650 5.14415 5.17028 5.24300 5.28198 5.46243 5.54660 5.62066 5.65500 5.74974 5.77948 5.97263 6.02033 6.05445 6.13532 6.23197 6.32252 6.37098 6.59371 7.12001 7.26539 7.30871 7.39652 7.43699 7.57931 7.97338 8.09641 8.64963 9.21063 9.57772 10.09744 10.78689 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.036710 B = 0.001429 C = 0.001394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.544039 B =19595.999264 C =20085.710795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.011 4.011 3 N -0.372 5.372 4 H 0.451 0.549 5 N -0.242 5.242 6 C -0.029 4.029 7 C 0.601 3.399 8 O -0.523 6.523 9 N -0.715 5.715 10 C 0.121 3.879 11 C -0.128 4.128 12 C 0.058 3.942 13 N -0.519 5.519 14 C 0.020 3.980 15 C 0.046 3.954 16 C 0.445 3.555 17 O -0.578 6.578 18 N -0.565 5.565 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.046 3.954 28 O -0.451 6.451 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.407 0.593 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.033 0.967 38 H 0.076 0.924 39 H 0.013 0.987 40 H 0.095 0.905 41 H 0.060 0.940 42 H 0.047 0.953 43 H 0.088 0.912 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.126 1.173 5.624 33.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.137 4.137 3 N -0.090 5.090 4 H 0.297 0.703 5 N -0.079 5.079 6 C -0.191 4.191 7 C 0.384 3.616 8 O -0.397 6.397 9 N -0.367 5.367 10 C -0.003 4.003 11 C -0.166 4.166 12 C -0.071 4.071 13 N -0.243 5.243 14 C -0.128 4.128 15 C -0.086 4.086 16 C 0.230 3.770 17 O -0.462 6.462 18 N -0.202 5.202 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.009 4.009 28 O -0.256 6.256 29 H 0.100 0.900 30 H 0.106 0.894 31 H 0.091 0.909 32 H 0.242 0.758 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.052 0.948 38 H 0.095 0.905 39 H 0.032 0.968 40 H 0.113 0.887 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.106 0.894 44 H 0.225 0.775 45 H 0.080 0.920 46 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -32.473 2.246 4.607 32.875 hybrid contribution 0.382 -0.460 0.952 1.124 sum -32.091 1.786 5.559 32.618 Atomic orbital electron populations 1.20304 0.85828 1.03960 1.03718 1.21601 0.95528 0.87361 1.09179 1.43068 1.02796 1.09390 1.53757 0.70334 1.73617 1.01828 1.14102 1.18396 1.22407 0.95472 0.90025 1.11187 1.16757 0.81549 0.86434 0.76820 1.90837 1.86643 1.12629 1.49603 1.45850 1.05238 1.11017 1.74631 1.21389 0.82093 0.94114 1.02713 1.21778 0.92472 0.98485 1.03851 1.22002 0.89943 0.94098 1.01027 1.61535 1.01354 1.25547 1.35854 1.22577 1.04010 0.98090 0.88088 1.21866 0.90064 0.95459 1.01172 1.19753 0.83548 0.89351 0.84354 1.90479 1.82989 1.16414 1.56318 1.41876 1.06564 1.09641 1.62115 1.19751 0.86668 0.91494 1.44838 0.87873 1.25257 0.98706 0.96539 0.97473 1.69624 1.22746 1.12274 1.49711 0.85807 0.80387 0.80377 0.77812 1.19236 1.20813 1.20775 1.17789 0.88979 0.85187 1.08984 1.84923 1.88706 1.19021 1.32967 0.90007 0.89436 0.90874 0.75761 0.91254 0.90966 0.90075 0.91051 0.94841 0.90531 0.96817 0.88663 0.92086 0.93457 0.89351 0.77491 0.91961 0.75812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.20 10.44 36.00 0.38 0.18 16 2 C -0.01 -0.07 7.27 -81.70 -0.59 -0.66 16 3 N -0.37 -2.06 6.87 33.71 0.23 -1.83 16 4 H 0.45 0.73 8.96 -190.45 -1.71 -0.97 16 5 N -0.24 -2.11 11.91 33.45 0.40 -1.72 16 6 C -0.03 -0.31 7.13 -82.69 -0.59 -0.90 16 7 C 0.60 7.46 7.82 -12.47 -0.10 7.36 16 8 O -0.52 -8.06 16.53 3.10 0.05 -8.00 16 9 N -0.72 -7.43 5.55 -61.36 -0.34 -7.77 16 10 C 0.12 1.24 5.67 -4.05 -0.02 1.22 16 11 C -0.13 -1.36 5.25 -26.73 -0.14 -1.50 16 12 C 0.06 0.73 4.96 -3.82 -0.02 0.71 16 13 N -0.52 -8.64 4.50 -244.37 -1.10 -9.74 16 14 C 0.02 0.33 8.96 60.06 0.54 0.86 16 15 C 0.05 0.83 5.45 -4.97 -0.03 0.80 16 16 C 0.44 10.57 7.47 -10.99 -0.08 10.48 16 17 O -0.58 -15.60 13.91 5.55 0.08 -15.52 16 18 N -0.57 -14.42 5.29 -10.96 -0.06 -14.48 16 19 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 20 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 21 C 0.02 0.58 5.50 -17.46 -0.10 0.49 16 22 N -0.90 -24.70 13.05 55.50 0.72 -23.97 16 23 Si 0.93 21.15 29.55 -169.99 -5.02 16.13 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 C 0.05 0.44 7.28 -39.12 -0.28 0.15 16 28 O -0.45 -4.17 13.20 -22.21 -0.29 -4.47 16 29 H 0.08 0.18 8.14 -51.92 -0.42 -0.24 16 30 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.07 0.03 8.14 -51.93 -0.42 -0.39 16 32 H 0.41 3.62 8.19 -40.82 -0.33 3.29 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.07 0.74 6.55 -51.93 -0.34 0.40 16 37 H 0.03 0.39 8.12 -51.93 -0.42 -0.03 16 38 H 0.08 0.91 7.93 -51.93 -0.41 0.50 16 39 H 0.01 0.20 8.14 -51.92 -0.42 -0.22 16 40 H 0.09 1.89 5.82 -51.93 -0.30 1.59 16 41 H 0.06 0.85 6.47 -51.93 -0.34 0.51 16 42 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 43 H 0.09 1.45 7.93 -51.92 -0.41 1.04 16 44 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 45 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 46 H 0.39 1.93 9.07 45.56 0.41 2.34 16 LS Contribution 392.09 15.07 5.91 5.91 Total: -1.00 -36.95 392.09 -7.67 -44.63 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -7.07 Total: 10.12 kcal Atomic # 6 Polarization: 11.89 SS G_CDS: -1.18 Total: 10.71 kcal Atomic # 7 Polarization: -59.36 SS G_CDS: -0.14 Total: -59.50 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -0.16 Total: -27.99 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.95 -7.67 -44.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689797178.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.134 kcal (2) G-P(sol) polarization free energy of solvation -36.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds