Wall clock time and date at job start Sat Apr 11 2020 05:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.39229 * 119.15863 * 2 1 4 4 C 1.36634 * 119.90797 * 180.02562 * 3 2 1 5 5 C 1.40789 * 118.15668 * 359.97438 * 4 3 2 6 6 C 1.40480 * 121.26796 * 180.02562 * 5 4 3 7 7 C 1.36317 * 120.08747 * 179.97438 * 6 5 4 8 8 C 1.38912 * 121.05759 * 359.97438 * 7 6 5 9 9 C 1.38707 * 120.72477 * 0.02562 * 8 7 6 10 10 C 1.47434 * 120.33078 * 179.97438 * 9 8 7 11 11 O 1.21602 * 120.00014 * 180.02562 * 10 9 8 12 12 N 1.34781 * 120.00059 * 359.97438 * 10 9 8 13 13 C 1.46496 * 120.00141 * 180.02562 * 12 10 9 14 14 H 1.08998 * 109.47174 * 34.99582 * 13 12 10 15 15 C 1.52999 * 109.47535 * 155.00410 * 13 12 10 16 16 N 1.46506 * 109.46684 * 305.00097 * 15 13 12 17 17 C 1.36938 * 119.99589 * 180.02562 * 16 15 13 18 18 H 1.07999 * 120.00325 * 359.97438 * 17 16 15 19 19 C 1.38815 * 119.99408 * 179.97438 * 17 16 15 20 20 N 1.31619 * 119.99480 * 179.97438 * 19 17 16 21 21 Si 1.86794 * 120.00486 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47176 * 89.99661 * 21 19 17 23 23 H 1.48498 * 109.47481 * 209.99740 * 21 19 17 24 24 H 1.48501 * 109.46931 * 329.99788 * 21 19 17 25 25 C 1.53003 * 109.47067 * 275.00498 * 13 12 10 26 26 C 1.52999 * 117.50284 * 128.74645 * 25 13 12 27 27 C 1.53000 * 117.50341 * 60.08237 * 25 13 12 28 28 C 1.41564 * 118.94251 * 0.24738 * 5 4 3 29 29 N 1.31239 * 119.15596 * 180.02562 * 2 1 3 30 30 H 1.09005 * 109.46992 * 89.99921 * 1 2 3 31 31 H 1.08998 * 109.47658 * 209.99758 * 1 2 3 32 32 H 1.09000 * 109.47287 * 330.00642 * 1 2 3 33 33 H 1.08003 * 120.04327 * 0.04235 * 3 2 1 34 34 H 1.07997 * 120.91999 * 180.02562 * 4 3 2 35 35 H 1.08006 * 119.95415 * 359.95015 * 6 5 4 36 36 H 1.08000 * 119.46584 * 179.97438 * 7 6 5 37 37 H 1.08004 * 119.63490 * 179.97438 * 8 7 6 38 38 H 0.97002 * 119.99548 * 0.02562 * 12 10 9 39 39 H 1.09000 * 109.47486 * 185.00032 * 15 13 12 40 40 H 1.09001 * 109.47362 * 64.99309 * 15 13 12 41 41 H 0.96995 * 120.00050 * 359.72237 * 16 15 13 42 42 H 0.97000 * 120.00111 * 179.97438 * 20 19 17 43 43 H 1.09003 * 115.54519 * 274.41861 * 25 13 12 44 44 H 1.08997 * 117.49686 * 0.02562 * 26 25 13 45 45 H 1.09001 * 117.49714 * 145.01868 * 26 25 13 46 46 H 1.08990 * 117.49958 * 214.98279 * 27 25 13 47 47 H 1.08996 * 117.49399 * 359.97438 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1853 1.2158 0.0000 4 6 3.5515 1.2337 -0.0005 5 6 4.2321 0.0012 -0.0005 6 6 5.6357 -0.0567 -0.0005 7 6 6.2699 -1.2633 0.0000 8 6 5.5499 -2.4513 0.0011 9 6 4.1629 -2.4394 0.0012 10 6 3.4075 -3.7055 0.0017 11 8 2.1916 -3.6880 0.0013 12 7 4.0645 -4.8823 0.0017 13 6 3.3139 -6.1403 0.0018 14 1 2.4048 -6.0210 -0.5876 15 6 4.1752 -7.2483 -0.6078 16 7 4.6278 -6.8380 -1.9394 17 6 5.4175 -7.6748 -2.6820 18 1 5.7070 -8.6369 -2.2858 19 6 5.8459 -7.2863 -3.9439 20 7 6.6053 -8.0904 -4.6574 21 14 5.3458 -5.6220 -4.6288 22 1 6.3569 -4.6045 -4.2446 23 1 5.2610 -5.7010 -6.1093 24 1 4.0219 -5.2372 -4.0770 25 6 2.9445 -6.5138 1.4388 26 6 1.4794 -6.8464 1.7280 27 6 2.0778 -5.5278 2.2246 28 6 3.4787 -1.1973 -0.0053 29 7 2.1463 -1.1461 -0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5137 33 1 1.6323 2.1436 0.0007 34 1 4.0943 2.1674 -0.0001 35 1 6.2131 0.8561 -0.0013 36 1 7.3494 -1.2961 -0.0004 37 1 6.0760 -3.3946 0.0011 38 1 5.0344 -4.8962 0.0017 39 1 3.5871 -8.1624 -0.6895 40 1 5.0404 -7.4286 0.0304 41 1 4.3645 -5.9756 -2.2968 42 1 6.9044 -7.8191 -5.5394 43 1 3.7046 -7.0666 1.9910 44 1 0.7787 -6.7995 0.8945 45 1 1.2756 -7.6177 2.4708 46 1 2.2673 -5.4322 3.2936 47 1 1.7711 -4.6128 1.7178 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699579289.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:32 Heat of formation + Delta-G solvation = 67.186499 kcal Electronic energy + Delta-G solvation = -29373.949019 eV Core-core repulsion = 25523.094673 eV Total energy + Delta-G solvation = -3850.854346 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.16092 -39.61160 -37.55719 -36.90055 -35.12715 -33.66336 -33.39551 -32.13058 -31.41081 -30.35282 -28.31007 -27.99178 -24.28937 -24.06754 -23.30148 -22.61030 -22.09311 -21.29010 -20.52586 -20.06183 -18.29092 -18.10598 -17.43092 -16.67448 -16.03198 -15.86373 -15.33512 -14.91996 -14.89332 -14.81348 -14.33798 -14.19544 -14.01117 -13.66590 -13.38213 -13.12137 -13.05793 -12.95261 -12.74930 -12.37899 -12.24630 -12.19876 -11.86775 -11.57196 -11.51890 -11.22922 -11.18602 -11.00691 -10.87504 -10.63269 -10.19425 -10.11380 -9.93781 -9.79337 -9.60736 -9.14448 -8.93290 -8.88395 -8.66194 -8.38803 -7.26939 -5.79296 -3.15102 -0.00424 0.62675 1.60240 2.59278 3.27867 3.29621 3.35736 3.43209 3.45032 4.01215 4.03005 4.12321 4.35876 4.46467 4.57584 4.58288 4.65298 4.79495 4.84064 4.90314 5.08175 5.13741 5.17933 5.27145 5.31615 5.37705 5.45838 5.49441 5.50529 5.66250 5.67723 5.72992 5.81170 5.83541 5.87942 5.89452 5.95932 6.00275 6.13572 6.14364 6.29888 6.35415 6.44645 6.54251 6.60009 6.62262 6.89994 7.79723 7.94162 7.96716 8.39534 8.55729 9.18551 9.90962 10.10613 11.38940 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009596 B = 0.004099 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2917.175948 B = 6829.911257 C = 8348.865805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.156 3.844 3 C -0.174 4.174 4 C -0.056 4.056 5 C -0.118 4.118 6 C -0.073 4.073 7 C -0.125 4.125 8 C -0.060 4.060 9 C -0.108 4.108 10 C 0.554 3.446 11 O -0.501 6.501 12 N -0.713 5.713 13 C 0.167 3.833 14 H 0.089 0.911 15 C 0.153 3.847 16 N -0.755 5.755 17 C -0.245 4.245 18 H 0.092 0.908 19 C 0.008 3.992 20 N -0.933 5.933 21 Si 0.878 3.122 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.277 1.277 25 C -0.163 4.163 26 C -0.170 4.170 27 C -0.184 4.184 28 C 0.169 3.831 29 N -0.436 5.436 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.136 0.864 34 H 0.139 0.861 35 H 0.133 0.867 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.400 0.600 39 H 0.044 0.956 40 H 0.034 0.966 41 H 0.363 0.637 42 H 0.260 0.740 43 H 0.104 0.896 44 H 0.094 0.906 45 H 0.089 0.911 46 H 0.081 0.919 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.106 19.826 14.860 25.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.003 3.997 3 C -0.194 4.194 4 C -0.082 4.082 5 C -0.120 4.120 6 C -0.092 4.092 7 C -0.143 4.143 8 C -0.080 4.080 9 C -0.112 4.112 10 C 0.340 3.660 11 O -0.377 6.377 12 N -0.365 5.365 13 C 0.063 3.937 14 H 0.107 0.893 15 C 0.025 3.975 16 N -0.402 5.402 17 C -0.375 4.375 18 H 0.109 0.891 19 C -0.188 4.188 20 N -0.580 5.580 21 Si 0.708 3.292 22 H -0.210 1.210 23 H -0.216 1.216 24 H -0.203 1.203 25 C -0.183 4.183 26 C -0.208 4.208 27 C -0.221 4.221 28 C 0.046 3.954 29 N -0.144 5.144 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.154 0.846 34 H 0.157 0.843 35 H 0.151 0.849 36 H 0.153 0.847 37 H 0.156 0.844 38 H 0.235 0.765 39 H 0.062 0.938 40 H 0.052 0.948 41 H 0.196 0.804 42 H 0.070 0.930 43 H 0.122 0.878 44 H 0.112 0.888 45 H 0.108 0.892 46 H 0.100 0.900 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.249 18.745 14.777 24.945 hybrid contribution 0.891 1.907 -0.693 2.216 sum -6.358 20.652 14.084 25.793 Atomic orbital electron populations 1.20772 0.88622 1.03596 1.03341 1.21699 0.97514 0.88092 0.92390 1.21760 0.95052 0.99368 1.03225 1.21427 0.94485 0.96967 0.95349 1.18823 0.94810 0.94011 1.04367 1.21141 0.92557 0.98660 0.96835 1.20867 1.00799 0.91874 1.00783 1.21580 0.92702 0.99489 0.94239 1.19969 0.93162 0.92705 1.05355 1.17858 0.87636 0.83035 0.77422 1.90753 1.12591 1.86826 1.47507 1.45978 1.10456 1.05169 1.74908 1.20839 0.96219 0.83126 0.93526 0.89337 1.20903 0.95439 0.94214 0.86922 1.42724 1.61878 1.20124 1.15438 1.19051 1.21902 0.99419 0.97084 0.89059 1.24630 0.99686 0.97643 0.96799 1.69695 1.39601 1.36397 1.12340 0.86640 0.78490 0.85379 0.78660 1.21013 1.21625 1.20318 1.22621 0.94227 1.04419 0.96988 1.22891 0.95434 0.99062 1.03394 1.23269 1.03851 0.95708 0.99265 1.18557 0.89349 0.91309 0.96198 1.68159 1.07699 1.27607 1.10965 0.90145 0.89925 0.90766 0.84600 0.84285 0.84932 0.84656 0.84404 0.76454 0.93819 0.94837 0.80409 0.93030 0.87789 0.88762 0.89212 0.90020 0.86338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 10.14 36.00 0.37 -0.62 16 2 C 0.16 1.91 6.78 -82.48 -0.56 1.35 16 3 C -0.17 -1.64 9.64 -39.79 -0.38 -2.03 16 4 C -0.06 -0.53 9.89 -39.20 -0.39 -0.92 16 5 C -0.12 -1.41 5.74 -106.82 -0.61 -2.03 16 6 C -0.07 -0.71 9.75 -39.43 -0.38 -1.09 16 7 C -0.13 -1.26 9.93 -40.02 -0.40 -1.66 16 8 C -0.06 -0.74 9.52 -39.16 -0.37 -1.11 16 9 C -0.11 -1.66 5.90 -104.62 -0.62 -2.28 16 10 C 0.55 9.55 7.10 -12.51 -0.09 9.46 16 11 O -0.50 -9.82 12.21 5.28 0.06 -9.75 16 12 N -0.71 -11.44 4.45 -54.88 -0.24 -11.68 16 13 C 0.17 2.79 2.43 -67.93 -0.17 2.63 16 14 H 0.09 1.67 7.33 -51.93 -0.38 1.29 16 15 C 0.15 2.90 5.80 -4.04 -0.02 2.87 16 16 N -0.76 -17.81 5.24 -59.90 -0.31 -18.12 16 17 C -0.24 -6.87 10.47 -15.06 -0.16 -7.02 16 18 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 19 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 20 N -0.93 -29.22 13.97 55.49 0.78 -28.44 16 21 Si 0.88 22.56 27.74 -169.99 -4.72 17.84 16 22 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 24 H -0.28 -7.02 6.51 56.52 0.37 -6.65 16 25 C -0.16 -2.32 5.36 -90.62 -0.49 -2.81 16 26 C -0.17 -2.28 10.18 -26.69 -0.27 -2.55 16 27 C -0.18 -2.62 9.74 -26.69 -0.26 -2.88 16 28 C 0.17 2.59 6.61 -84.58 -0.56 2.03 16 29 N -0.44 -6.96 8.33 -7.01 -0.06 -7.02 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.47 8.07 -51.93 -0.42 0.05 16 33 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16 34 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 36 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.14 1.50 6.37 -52.48 -0.33 1.17 16 38 H 0.40 5.86 6.63 -40.82 -0.27 5.59 16 39 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.36 8.66 5.20 -40.82 -0.21 8.45 16 42 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 43 H 0.10 1.37 8.11 -51.93 -0.42 0.95 16 44 H 0.09 1.32 8.05 -51.93 -0.42 0.90 16 45 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.12 1.99 5.02 -51.93 -0.26 1.73 16 LS Contribution 385.38 15.07 5.81 5.81 Total: -1.00 -35.49 385.38 -10.68 -46.17 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: -6.54 Total: 13.69 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -5.46 Total: -8.50 kcal Atomic # 7 Polarization: -65.42 SS G_CDS: 0.16 Total: -65.27 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.06 Total: -9.75 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.72 Total: 17.84 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.49 -10.68 -46.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699579289.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.359 kcal (2) G-P(sol) polarization free energy of solvation -35.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds