Wall clock time and date at job start Sat Apr 11 2020 05:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39233 * 119.15540 * 2 1 4 4 C 1.36631 * 119.90319 * 180.02562 * 3 2 1 5 5 C 1.40795 * 118.15509 * 359.97438 * 4 3 2 6 6 C 1.40478 * 121.25139 * 180.02562 * 5 4 3 7 7 C 1.36317 * 120.08360 * 179.69981 * 6 5 4 8 8 C 1.38903 * 121.05537 * 0.56688 * 7 6 5 9 9 C 1.38710 * 120.72849 * 359.42668 * 8 7 6 10 10 C 1.47439 * 120.33622 * 180.29931 * 9 8 7 11 11 O 1.21597 * 120.00063 * 179.97438 * 10 9 8 12 12 N 1.34784 * 119.99692 * 0.02562 * 10 9 8 13 13 C 1.46490 * 119.99857 * 179.97438 * 12 10 9 14 14 H 1.08994 * 109.47357 * 324.99566 * 13 12 10 15 15 C 1.53004 * 109.46992 * 204.99562 * 13 12 10 16 16 N 1.46505 * 109.46807 * 55.00041 * 15 13 12 17 17 C 1.36937 * 119.99575 * 180.02562 * 16 15 13 18 18 H 1.07994 * 120.00573 * 359.97438 * 17 16 15 19 19 C 1.38820 * 119.99547 * 180.02562 * 17 16 15 20 20 N 1.31613 * 120.00290 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99583 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47274 * 90.00127 * 21 19 17 23 23 H 1.48505 * 109.46923 * 209.99960 * 21 19 17 24 24 H 1.48499 * 109.47055 * 329.99304 * 21 19 17 25 25 C 1.53003 * 109.47498 * 84.99960 * 13 12 10 26 26 C 1.52997 * 117.49613 * 8.74132 * 25 13 12 27 27 C 1.53001 * 117.49619 * 300.08612 * 25 13 12 28 28 C 1.41551 * 118.94855 * 0.02562 * 5 4 3 29 29 N 1.31234 * 119.15534 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.47555 * 269.98834 * 1 2 3 31 31 H 1.09008 * 109.46959 * 29.98583 * 1 2 3 32 32 H 1.08996 * 109.46989 * 149.98146 * 1 2 3 33 33 H 1.08004 * 120.04744 * 359.97438 * 3 2 1 34 34 H 1.08002 * 120.92298 * 180.02562 * 4 3 2 35 35 H 1.08005 * 119.95898 * 359.97438 * 6 5 4 36 36 H 1.08001 * 119.47106 * 180.29129 * 7 6 5 37 37 H 1.08002 * 119.63980 * 179.71181 * 8 7 6 38 38 H 0.97005 * 119.99783 * 359.97438 * 12 10 9 39 39 H 1.08999 * 109.47394 * 174.99875 * 15 13 12 40 40 H 1.08999 * 109.47336 * 294.99804 * 15 13 12 41 41 H 0.96993 * 120.00152 * 359.97438 * 16 15 13 42 42 H 0.97001 * 120.00410 * 179.97438 * 20 19 17 43 43 H 1.08996 * 115.55298 * 154.41574 * 25 13 12 44 44 H 1.08999 * 117.50133 * 0.02562 * 26 25 13 45 45 H 1.09000 * 117.49709 * 145.02170 * 26 25 13 46 46 H 1.08993 * 117.49764 * 214.97928 * 27 25 13 47 47 H 1.09003 * 117.49452 * 359.97438 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1853 1.2159 0.0000 4 6 3.5515 1.2338 -0.0005 5 6 4.2320 0.0012 -0.0005 6 6 5.6356 -0.0564 -0.0005 7 6 6.2700 -1.2629 0.0057 8 6 5.5503 -2.4509 0.0003 9 6 4.1632 -2.4394 0.0004 10 6 3.4079 -3.7056 0.0013 11 8 2.1921 -3.6883 0.0018 12 7 4.0653 -4.8823 0.0026 13 6 3.3149 -6.1404 0.0040 14 1 2.4059 -6.0206 0.5934 15 6 4.1766 -7.2474 0.6148 16 7 4.6292 -6.8356 1.9459 17 6 5.4200 -7.6709 2.6889 18 1 5.7097 -8.6333 2.2939 19 6 5.8484 -7.2809 3.9504 20 7 5.4950 -6.1082 4.4321 21 14 6.9278 -8.4201 4.9637 22 1 8.3561 -8.1437 4.6656 23 1 6.6703 -8.1908 6.4082 24 1 6.6150 -9.8312 4.6231 25 6 2.9455 -6.5157 -1.4325 26 6 3.5657 -5.6887 -2.5604 27 6 2.0818 -5.5289 -2.2206 28 6 3.4788 -1.1973 -0.0005 29 7 2.1463 -1.1461 -0.0005 30 1 -0.3634 -0.0002 1.0276 31 1 -0.3633 0.8902 -0.5137 32 1 -0.3633 -0.8898 -0.5141 33 1 1.6323 2.1437 -0.0004 34 1 4.0943 2.1674 -0.0001 35 1 6.2128 0.8565 -0.0009 36 1 7.3495 -1.2956 0.0104 37 1 6.0764 -3.3942 0.0007 38 1 5.0352 -4.8960 0.0025 39 1 3.5887 -8.1616 0.6976 40 1 5.0415 -7.4284 -0.0233 41 1 4.3693 -5.9710 2.3006 42 1 5.7940 -5.8358 5.3138 43 1 2.7891 -7.5788 -1.6153 44 1 4.2372 -4.8775 -2.2791 45 1 3.8171 -6.2076 -3.4854 46 1 1.3576 -5.9427 -2.9221 47 1 1.7765 -4.6125 -1.7155 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699579290.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:35 Heat of formation + Delta-G solvation = 67.826829 kcal Electronic energy + Delta-G solvation = -29384.929944 eV Core-core repulsion = 25534.103365 eV Total energy + Delta-G solvation = -3850.826579 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.05488 -39.63322 -37.42633 -36.72267 -34.83425 -33.53353 -33.17538 -32.01879 -31.25709 -30.10091 -28.06056 -27.82731 -24.19708 -23.99763 -23.33993 -22.49875 -22.15066 -21.41627 -20.43954 -19.58592 -18.14049 -17.82730 -17.11230 -16.48565 -15.96614 -15.81358 -15.47418 -14.82833 -14.79011 -14.65951 -14.19610 -13.93721 -13.89322 -13.45660 -13.21138 -13.03853 -12.97791 -12.94015 -12.70937 -12.27109 -12.12739 -11.98627 -11.54554 -11.46560 -11.40401 -11.25057 -11.12160 -10.86525 -10.81697 -10.51669 -10.17853 -10.04528 -9.77332 -9.70411 -9.49244 -9.02682 -8.88888 -8.76368 -8.51032 -8.26179 -6.94015 -5.76124 -3.06003 0.12091 0.74708 1.72341 2.71677 3.41319 3.42943 3.48385 3.50065 3.50594 4.12400 4.14727 4.18167 4.45074 4.56140 4.59094 4.68986 4.76339 4.94270 5.00182 5.03149 5.19365 5.25251 5.28501 5.30433 5.40608 5.54804 5.56018 5.56574 5.67933 5.78269 5.84407 5.85839 5.92335 5.94162 6.00058 6.09534 6.10429 6.13196 6.25722 6.30582 6.39351 6.42667 6.55062 6.65048 6.72212 6.75715 7.04673 7.69596 7.94054 8.06742 8.41387 8.70779 9.53253 10.09794 10.45414 11.45999 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010538 B = 0.003533 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2656.465415 B = 7923.282161 C = 9153.773825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.154 3.846 3 C -0.175 4.175 4 C -0.057 4.057 5 C -0.117 4.117 6 C -0.075 4.075 7 C -0.124 4.124 8 C -0.057 4.057 9 C -0.105 4.105 10 C 0.555 3.445 11 O -0.501 6.501 12 N -0.709 5.709 13 C 0.171 3.829 14 H 0.091 0.909 15 C 0.148 3.852 16 N -0.732 5.732 17 C -0.242 4.242 18 H 0.071 0.929 19 C -0.011 4.011 20 N -0.930 5.930 21 Si 0.906 3.094 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 C -0.160 4.160 26 C -0.178 4.178 27 C -0.186 4.186 28 C 0.170 3.830 29 N -0.435 5.435 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.135 0.865 34 H 0.138 0.862 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.137 0.863 38 H 0.400 0.600 39 H 0.034 0.966 40 H 0.026 0.974 41 H 0.386 0.614 42 H 0.255 0.745 43 H 0.108 0.892 44 H 0.090 0.910 45 H 0.085 0.915 46 H 0.082 0.918 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.078 15.624 -14.226 21.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.002 3.998 3 C -0.195 4.195 4 C -0.083 4.083 5 C -0.120 4.120 6 C -0.094 4.094 7 C -0.142 4.142 8 C -0.078 4.078 9 C -0.109 4.109 10 C 0.341 3.659 11 O -0.376 6.376 12 N -0.361 5.361 13 C 0.066 3.934 14 H 0.109 0.891 15 C 0.020 3.980 16 N -0.377 5.377 17 C -0.373 4.373 18 H 0.088 0.912 19 C -0.208 4.208 20 N -0.578 5.578 21 Si 0.737 3.263 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.179 4.179 26 C -0.215 4.215 27 C -0.223 4.223 28 C 0.046 3.954 29 N -0.143 5.143 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.153 0.847 34 H 0.156 0.844 35 H 0.149 0.851 36 H 0.152 0.848 37 H 0.155 0.845 38 H 0.236 0.764 39 H 0.052 0.948 40 H 0.043 0.957 41 H 0.220 0.780 42 H 0.065 0.935 43 H 0.126 0.874 44 H 0.109 0.891 45 H 0.103 0.897 46 H 0.101 0.899 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.275 14.602 -14.152 20.779 hybrid contribution 1.697 0.424 0.845 1.943 sum -2.578 15.027 -13.307 20.237 Atomic orbital electron populations 1.20765 0.88696 1.03498 1.03328 1.21683 0.97482 0.88110 0.92574 1.21744 0.95046 0.99325 1.03345 1.21414 0.94476 0.96951 0.95481 1.18810 0.94802 0.93999 1.04355 1.21115 0.92553 0.98602 0.97123 1.20846 1.00710 0.91905 1.00711 1.21550 0.92706 0.99397 0.94103 1.19965 0.93140 0.92697 1.05051 1.17834 0.87591 0.83039 0.77389 1.90753 1.12610 1.86815 1.47449 1.45914 1.10428 1.05105 1.74702 1.20715 0.96097 0.83172 0.93402 0.89070 1.20913 0.95199 0.93961 0.87931 1.42362 1.60669 1.20838 1.13782 1.19213 1.22647 0.98397 0.97039 0.91151 1.24742 1.01242 0.97132 0.97654 1.69673 1.49619 1.20122 1.18415 0.86205 0.80301 0.80041 0.79711 1.21766 1.21820 1.20767 1.22697 1.05242 0.97310 0.92697 1.22863 0.96790 1.03143 0.98703 1.23346 0.92901 1.03007 1.03037 1.18558 0.89314 0.91333 0.96172 1.68155 1.07735 1.27555 1.10805 0.90152 0.90859 0.89964 0.84695 0.84376 0.85053 0.84790 0.84481 0.76382 0.94844 0.95664 0.77954 0.93525 0.87380 0.89145 0.89670 0.89921 0.86328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 10.15 36.00 0.37 -0.69 16 2 C 0.15 2.01 6.78 -82.48 -0.56 1.45 16 3 C -0.17 -1.78 9.64 -39.79 -0.38 -2.16 16 4 C -0.06 -0.58 9.89 -39.20 -0.39 -0.97 16 5 C -0.12 -1.50 5.74 -106.82 -0.61 -2.12 16 6 C -0.07 -0.79 9.75 -39.43 -0.38 -1.17 16 7 C -0.12 -1.35 9.93 -40.03 -0.40 -1.75 16 8 C -0.06 -0.76 9.52 -39.16 -0.37 -1.13 16 9 C -0.10 -1.70 5.91 -104.61 -0.62 -2.32 16 10 C 0.56 10.06 6.60 -12.51 -0.08 9.98 16 11 O -0.50 -10.32 12.22 5.28 0.06 -10.26 16 12 N -0.71 -12.00 3.00 -54.88 -0.16 -12.17 16 13 C 0.17 3.01 2.59 -67.93 -0.18 2.84 16 14 H 0.09 1.84 7.58 -51.93 -0.39 1.44 16 15 C 0.15 2.93 5.80 -4.04 -0.02 2.91 16 16 N -0.73 -18.27 5.43 -59.90 -0.33 -18.59 16 17 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 18 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 19 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 20 N -0.93 -28.13 13.06 55.49 0.72 -27.40 16 21 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 25 C -0.16 -2.40 5.71 -90.62 -0.52 -2.91 16 26 C -0.18 -2.45 9.74 -26.70 -0.26 -2.71 16 27 C -0.19 -2.79 9.82 -26.70 -0.26 -3.05 16 28 C 0.17 2.74 6.61 -84.58 -0.56 2.18 16 29 N -0.43 -7.30 8.33 -7.01 -0.06 -7.36 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.51 8.07 -51.92 -0.42 0.09 16 32 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 34 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 35 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 36 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.14 1.66 6.36 -52.49 -0.33 1.32 16 38 H 0.40 6.38 6.63 -40.82 -0.27 6.11 16 39 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.39 10.38 7.33 -40.82 -0.30 10.08 16 42 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 43 H 0.11 1.49 8.11 -51.93 -0.42 1.07 16 44 H 0.09 1.28 6.67 -51.93 -0.35 0.94 16 45 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 47 H 0.12 2.10 5.01 -51.93 -0.26 1.84 16 LS Contribution 385.58 15.07 5.81 5.81 Total: -1.00 -34.43 385.58 -10.97 -45.39 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: -6.52 Total: 16.17 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -5.48 Total: -8.87 kcal Atomic # 7 Polarization: -65.69 SS G_CDS: 0.18 Total: -65.52 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.06 Total: -10.26 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.43 -10.97 -45.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699579290.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.221 kcal (2) G-P(sol) polarization free energy of solvation -34.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds