Wall clock time and date at job start Sat Apr 11 2020 05:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39233 * 119.15540 * 2 1 4 4 C 1.36631 * 119.90319 * 180.02562 * 3 2 1 5 5 C 1.40795 * 118.15509 * 359.97438 * 4 3 2 6 6 C 1.40478 * 121.25139 * 180.02562 * 5 4 3 7 7 C 1.36317 * 120.08360 * 179.69981 * 6 5 4 8 8 C 1.38903 * 121.05537 * 0.56688 * 7 6 5 9 9 C 1.38710 * 120.72849 * 359.42668 * 8 7 6 10 10 C 1.47439 * 120.33622 * 180.29931 * 9 8 7 11 11 O 1.21597 * 120.00063 * 179.97438 * 10 9 8 12 12 N 1.34784 * 119.99692 * 0.02562 * 10 9 8 13 13 C 1.46490 * 119.99857 * 179.97438 * 12 10 9 14 14 H 1.08994 * 109.47357 * 324.99566 * 13 12 10 15 15 C 1.53004 * 109.46992 * 204.99562 * 13 12 10 16 16 N 1.46505 * 109.46807 * 55.00041 * 15 13 12 17 17 C 1.36937 * 119.99575 * 180.02562 * 16 15 13 18 18 H 1.07994 * 120.00573 * 359.97438 * 17 16 15 19 19 C 1.38820 * 119.99547 * 180.02562 * 17 16 15 20 20 N 1.31613 * 120.00290 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99583 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47274 * 90.00127 * 21 19 17 23 23 H 1.48505 * 109.46923 * 209.99960 * 21 19 17 24 24 H 1.48499 * 109.47055 * 329.99304 * 21 19 17 25 25 C 1.53003 * 109.47498 * 84.99960 * 13 12 10 26 26 C 1.52997 * 117.49613 * 8.74132 * 25 13 12 27 27 C 1.53001 * 117.49619 * 300.08612 * 25 13 12 28 28 C 1.41551 * 118.94855 * 0.02562 * 5 4 3 29 29 N 1.31234 * 119.15534 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.47555 * 269.98834 * 1 2 3 31 31 H 1.09008 * 109.46959 * 29.98583 * 1 2 3 32 32 H 1.08996 * 109.46989 * 149.98146 * 1 2 3 33 33 H 1.08004 * 120.04744 * 359.97438 * 3 2 1 34 34 H 1.08002 * 120.92298 * 180.02562 * 4 3 2 35 35 H 1.08005 * 119.95898 * 359.97438 * 6 5 4 36 36 H 1.08001 * 119.47106 * 180.29129 * 7 6 5 37 37 H 1.08002 * 119.63980 * 179.71181 * 8 7 6 38 38 H 0.97005 * 119.99783 * 359.97438 * 12 10 9 39 39 H 1.08999 * 109.47394 * 174.99875 * 15 13 12 40 40 H 1.08999 * 109.47336 * 294.99804 * 15 13 12 41 41 H 0.96993 * 120.00152 * 359.97438 * 16 15 13 42 42 H 0.97001 * 120.00410 * 179.97438 * 20 19 17 43 43 H 1.08996 * 115.55298 * 154.41574 * 25 13 12 44 44 H 1.08999 * 117.50133 * 0.02562 * 26 25 13 45 45 H 1.09000 * 117.49709 * 145.02170 * 26 25 13 46 46 H 1.08993 * 117.49764 * 214.97928 * 27 25 13 47 47 H 1.09003 * 117.49452 * 359.97438 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1853 1.2159 0.0000 4 6 3.5515 1.2338 -0.0005 5 6 4.2320 0.0012 -0.0005 6 6 5.6356 -0.0564 -0.0005 7 6 6.2700 -1.2629 0.0057 8 6 5.5503 -2.4509 0.0003 9 6 4.1632 -2.4394 0.0004 10 6 3.4079 -3.7056 0.0013 11 8 2.1921 -3.6883 0.0018 12 7 4.0653 -4.8823 0.0026 13 6 3.3149 -6.1404 0.0040 14 1 2.4059 -6.0206 0.5934 15 6 4.1766 -7.2474 0.6148 16 7 4.6292 -6.8356 1.9459 17 6 5.4200 -7.6709 2.6889 18 1 5.7097 -8.6333 2.2939 19 6 5.8484 -7.2809 3.9504 20 7 5.4950 -6.1082 4.4321 21 14 6.9278 -8.4201 4.9637 22 1 8.3561 -8.1437 4.6656 23 1 6.6703 -8.1908 6.4082 24 1 6.6150 -9.8312 4.6231 25 6 2.9455 -6.5157 -1.4325 26 6 3.5657 -5.6887 -2.5604 27 6 2.0818 -5.5289 -2.2206 28 6 3.4788 -1.1973 -0.0005 29 7 2.1463 -1.1461 -0.0005 30 1 -0.3634 -0.0002 1.0276 31 1 -0.3633 0.8902 -0.5137 32 1 -0.3633 -0.8898 -0.5141 33 1 1.6323 2.1437 -0.0004 34 1 4.0943 2.1674 -0.0001 35 1 6.2128 0.8565 -0.0009 36 1 7.3495 -1.2956 0.0104 37 1 6.0764 -3.3942 0.0007 38 1 5.0352 -4.8960 0.0025 39 1 3.5887 -8.1616 0.6976 40 1 5.0415 -7.4284 -0.0233 41 1 4.3693 -5.9710 2.3006 42 1 5.7940 -5.8358 5.3138 43 1 2.7891 -7.5788 -1.6153 44 1 4.2372 -4.8775 -2.2791 45 1 3.8171 -6.2076 -3.4854 46 1 1.3576 -5.9427 -2.9221 47 1 1.7765 -4.6125 -1.7155 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699579290.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:34 Heat of formation + Delta-G solvation = 46.647845 kcal Electronic energy + Delta-G solvation = -29385.848334 eV Core-core repulsion = 25534.103365 eV Total energy + Delta-G solvation = -3851.744969 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.05066 -40.90112 -38.49303 -37.93892 -36.55652 -34.85503 -34.37110 -33.15198 -32.81442 -31.27115 -29.58028 -28.80326 -26.03674 -24.98041 -24.49965 -23.46822 -23.36682 -22.96198 -21.62349 -20.92384 -19.35783 -19.07582 -18.68961 -17.55288 -17.22761 -17.01402 -16.78316 -16.45053 -15.82215 -15.67913 -15.54255 -15.22044 -15.03849 -14.96930 -14.75619 -14.41330 -14.11143 -13.82883 -13.75477 -13.55640 -13.13335 -13.12606 -12.97553 -12.84193 -12.71572 -12.66095 -12.37176 -12.29060 -12.24392 -12.09347 -11.83804 -11.45561 -11.30079 -11.00340 -10.94211 -10.80260 -10.09334 -9.90688 -9.67308 -9.23727 -9.02093 -7.93725 -5.24213 -0.80885 -0.16888 0.78433 1.47849 1.49754 1.58185 1.78147 2.15767 2.27674 2.55774 2.93840 3.15021 3.25014 3.40220 3.54307 3.65507 3.70142 3.84428 3.95716 3.98242 4.00706 4.08741 4.16956 4.18201 4.34899 4.39685 4.46420 4.49364 4.60247 4.67407 4.72734 4.76977 4.80516 4.87590 4.95101 4.97668 5.04161 5.09279 5.14477 5.17872 5.22948 5.24934 5.36262 5.39996 5.50234 5.58335 5.63816 5.86158 6.25742 6.61582 7.12293 7.33062 7.36595 8.05902 8.30690 9.29297 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010538 B = 0.003533 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2656.465415 B = 7923.282161 C = 9153.773825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.138 3.862 3 C -0.176 4.176 4 C -0.047 4.047 5 C -0.138 4.138 6 C -0.053 4.053 7 C -0.135 4.135 8 C -0.052 4.052 9 C -0.152 4.152 10 C 0.551 3.449 11 O -0.538 6.538 12 N -0.704 5.704 13 C 0.180 3.820 14 H 0.056 0.944 15 C 0.152 3.848 16 N -0.743 5.743 17 C -0.244 4.244 18 H 0.080 0.920 19 C -0.073 4.073 20 N -0.969 5.969 21 Si 0.975 3.025 22 H -0.283 1.283 23 H -0.300 1.300 24 H -0.270 1.270 25 C -0.162 4.162 26 C -0.160 4.160 27 C -0.192 4.192 28 C 0.139 3.861 29 N -0.495 5.495 30 H 0.083 0.917 31 H 0.110 0.890 32 H 0.058 0.942 33 H 0.176 0.824 34 H 0.185 0.815 35 H 0.178 0.822 36 H 0.167 0.833 37 H 0.140 0.860 38 H 0.404 0.596 39 H 0.038 0.962 40 H 0.042 0.958 41 H 0.373 0.627 42 H 0.249 0.751 43 H 0.128 0.872 44 H 0.083 0.917 45 H 0.113 0.887 46 H 0.102 0.898 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.119 17.331 -15.538 23.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.014 4.014 3 C -0.195 4.195 4 C -0.072 4.072 5 C -0.140 4.140 6 C -0.072 4.072 7 C -0.153 4.153 8 C -0.072 4.072 9 C -0.156 4.156 10 C 0.339 3.661 11 O -0.416 6.416 12 N -0.357 5.357 13 C 0.075 3.925 14 H 0.074 0.926 15 C 0.025 3.975 16 N -0.386 5.386 17 C -0.376 4.376 18 H 0.098 0.902 19 C -0.265 4.265 20 N -0.620 5.620 21 Si 0.804 3.196 22 H -0.210 1.210 23 H -0.227 1.227 24 H -0.195 1.195 25 C -0.182 4.182 26 C -0.197 4.197 27 C -0.229 4.229 28 C 0.016 3.984 29 N -0.204 5.204 30 H 0.101 0.899 31 H 0.128 0.872 32 H 0.077 0.923 33 H 0.193 0.807 34 H 0.202 0.798 35 H 0.195 0.805 36 H 0.185 0.815 37 H 0.158 0.842 38 H 0.241 0.759 39 H 0.056 0.944 40 H 0.060 0.940 41 H 0.205 0.795 42 H 0.058 0.942 43 H 0.146 0.854 44 H 0.101 0.899 45 H 0.131 0.869 46 H 0.120 0.880 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.305 16.277 -15.511 22.602 hybrid contribution 1.028 -0.014 1.207 1.586 sum -1.276 16.263 -14.304 21.696 Atomic orbital electron populations 1.20841 0.87406 1.04131 1.03656 1.22306 0.98746 0.88665 0.91683 1.22126 0.95593 0.99489 1.02307 1.21966 0.94642 0.97481 0.93096 1.19191 0.96032 0.93948 1.04819 1.21650 0.91738 1.00142 0.93622 1.21224 1.02232 0.91114 1.00721 1.21753 0.91727 1.00928 0.92802 1.19959 0.94316 0.91992 1.09298 1.18277 0.87426 0.83932 0.76421 1.90715 1.14199 1.87386 1.49300 1.45830 1.10432 1.04757 1.74642 1.20463 0.94285 0.83020 0.94737 0.92590 1.21022 0.95886 0.94621 0.85941 1.42538 1.60546 1.20067 1.15469 1.19646 1.21881 0.98756 0.97268 0.90180 1.25568 1.03230 0.98678 0.99050 1.69853 1.51471 1.22153 1.18518 0.85126 0.78599 0.78594 0.77319 1.21016 1.22697 1.19454 1.22623 1.06070 0.98336 0.91160 1.22923 0.95508 1.02330 0.98909 1.23247 0.94340 1.01867 1.03396 1.18871 0.89711 0.92533 0.97256 1.68090 1.08815 1.29967 1.13517 0.89870 0.87168 0.92295 0.80664 0.79756 0.80483 0.81500 0.84222 0.75922 0.94416 0.93964 0.79550 0.94179 0.85437 0.89896 0.86923 0.87960 0.89424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.12 10.15 71.23 0.72 -1.40 16 2 C 0.14 3.67 6.78 42.89 0.29 3.97 16 3 C -0.18 -3.18 9.64 22.13 0.21 -2.97 16 4 C -0.05 -0.79 9.89 22.52 0.22 -0.57 16 5 C -0.14 -3.34 5.74 -21.29 -0.12 -3.46 16 6 C -0.05 -0.95 9.75 22.37 0.22 -0.73 16 7 C -0.14 -2.70 9.93 21.98 0.22 -2.49 16 8 C -0.05 -1.41 9.52 22.54 0.21 -1.20 16 9 C -0.15 -5.29 5.91 -19.86 -0.12 -5.41 16 10 C 0.55 21.85 6.60 86.67 0.57 22.42 16 11 O -0.54 -24.61 12.22 -4.02 -0.05 -24.65 16 12 N -0.70 -25.50 3.00 -445.80 -1.34 -26.84 16 13 C 0.18 6.69 2.59 45.00 0.12 6.81 16 14 H 0.06 2.47 7.58 -2.39 -0.02 2.45 16 15 C 0.15 6.11 5.80 86.38 0.50 6.61 16 16 N -0.74 -38.11 5.43 -343.44 -1.87 -39.98 16 17 C -0.24 -13.54 9.99 84.04 0.84 -12.70 16 18 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 19 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 20 N -0.97 -60.21 13.06 21.65 0.28 -59.93 16 21 Si 0.97 46.12 29.55 68.60 2.03 48.15 16 22 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 23 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 24 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 25 C -0.16 -4.91 5.71 -10.79 -0.06 -4.97 16 26 C -0.16 -4.32 9.74 30.62 0.30 -4.02 16 27 C -0.19 -5.91 9.82 30.62 0.30 -5.61 16 28 C 0.14 4.72 6.61 40.62 0.27 4.99 16 29 N -0.49 -17.84 8.33 -176.10 -1.47 -19.31 16 30 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.11 1.36 8.07 -2.38 -0.02 1.34 16 32 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.18 1.63 8.06 -2.91 -0.02 1.61 16 34 H 0.19 1.34 8.06 -2.91 -0.02 1.32 16 35 H 0.18 1.50 8.06 -2.91 -0.02 1.48 16 36 H 0.17 2.16 8.06 -2.91 -0.02 2.14 16 37 H 0.14 3.52 6.36 -2.91 -0.02 3.50 16 38 H 0.40 13.64 6.63 -92.70 -0.61 13.03 16 39 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.37 21.02 7.33 -92.71 -0.68 20.34 16 42 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 43 H 0.13 3.36 8.11 -2.39 -0.02 3.34 16 44 H 0.08 2.39 6.67 -2.39 -0.02 2.37 16 45 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 46 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 47 H 0.09 3.36 5.01 -2.39 -0.01 3.35 16 Total: -1.00 -80.93 385.58 2.47 -78.46 By element: Atomic # 1 Polarization: 48.84 SS G_CDS: -0.28 Total: 48.56 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: 5.16 Total: -4.45 kcal Atomic # 7 Polarization: -141.67 SS G_CDS: -4.39 Total: -146.06 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.05 Total: -24.65 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -80.93 2.47 -78.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699579290.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.109 kcal (2) G-P(sol) polarization free energy of solvation -80.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds