Wall clock time and date at job start Sat Apr 11 2020 05:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.39313 * 119.06120 * 2 1 4 4 C 1.38849 * 119.57728 * 180.32931 * 3 2 1 5 5 C 1.47906 * 121.11300 * 179.64539 * 4 3 2 6 6 O 1.21543 * 120.00490 * 174.16459 * 5 4 3 7 7 N 1.34776 * 119.99897 * 354.15688 * 5 4 3 8 8 C 1.46506 * 119.99937 * 180.02562 * 7 5 4 9 9 H 1.08996 * 109.47110 * 35.00359 * 8 7 5 10 10 C 1.53003 * 109.46908 * 155.00643 * 8 7 5 11 11 N 1.46502 * 109.46817 * 305.00072 * 10 8 7 12 12 C 1.36941 * 119.99964 * 180.02562 * 11 10 8 13 13 H 1.07994 * 119.99703 * 0.02562 * 12 11 10 14 14 C 1.38808 * 119.99987 * 179.97438 * 12 11 10 15 15 N 1.31623 * 120.00346 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99854 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47291 * 60.00080 * 16 14 12 18 18 H 1.48502 * 109.47105 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47277 * 299.99785 * 16 14 12 20 20 C 1.53000 * 109.47322 * 275.00126 * 8 7 5 21 21 C 1.53000 * 117.49519 * 128.74731 * 20 8 7 22 22 C 1.53002 * 117.49566 * 60.08652 * 20 8 7 23 23 C 1.41822 * 117.77913 * 359.36488 * 4 3 2 24 24 C 1.40096 * 121.37359 * 180.25159 * 23 4 3 25 25 C 1.36250 * 119.64847 * 179.97438 * 24 23 4 26 26 C 1.39354 * 120.82943 * 0.04334 * 25 24 23 27 27 C 1.36054 * 121.05152 * 359.97345 * 26 25 24 28 28 C 1.40711 * 119.74510 * 0.02562 * 27 26 25 29 29 N 1.30967 * 119.05746 * 179.63264 * 2 1 3 30 30 H 1.09001 * 109.47001 * 270.36745 * 1 2 3 31 31 H 1.08996 * 109.47018 * 30.36348 * 1 2 3 32 32 H 1.08997 * 109.46922 * 150.36664 * 1 2 3 33 33 H 1.08004 * 120.20847 * 359.96920 * 3 2 1 34 34 H 0.97003 * 119.99750 * 0.28234 * 7 5 4 35 35 H 1.08995 * 109.47232 * 64.99935 * 10 8 7 36 36 H 1.08999 * 109.46991 * 185.00478 * 10 8 7 37 37 H 0.97001 * 119.99891 * 359.97438 * 11 10 8 38 38 H 0.97001 * 120.00090 * 180.02562 * 15 14 12 39 39 H 1.09000 * 115.55349 * 274.42262 * 20 8 7 40 40 H 1.08992 * 117.49915 * 0.02562 * 21 20 8 41 41 H 1.08997 * 117.49787 * 145.02556 * 21 20 8 42 42 H 1.09000 * 117.49969 * 214.97587 * 22 20 8 43 43 H 1.09000 * 117.50194 * 359.97438 * 22 20 8 44 44 H 1.08004 * 120.17635 * 0.03317 * 24 23 4 45 45 H 1.08000 * 119.58670 * 179.97438 * 25 24 23 46 46 H 1.08003 * 119.46785 * 180.02562 * 26 25 24 47 47 H 1.07997 * 120.13113 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1838 1.2177 0.0000 4 6 3.5722 1.2303 -0.0069 5 6 4.3250 2.5034 -0.0150 6 8 5.5362 2.4940 0.0860 7 7 3.6679 3.6740 -0.1345 8 6 4.4136 4.9351 -0.1431 9 1 5.3683 4.7892 -0.6484 10 6 3.6031 6.0018 -0.8821 11 7 3.2623 5.5155 -2.2213 12 6 2.5347 6.3045 -3.0717 13 1 2.2124 7.2855 -2.7552 14 6 2.2123 5.8440 -4.3409 15 7 2.6063 4.6490 -4.7272 16 14 1.2203 6.9207 -5.5011 17 1 1.9569 8.1849 -5.7547 18 1 1.0117 6.2039 -6.7849 19 1 -0.0958 7.2293 -4.8865 20 6 4.6627 5.3901 1.2963 21 6 6.0985 5.7477 1.6856 22 6 5.4638 4.4548 2.2042 23 6 4.2445 -0.0185 0.0001 24 6 5.6434 -0.0936 -0.0009 25 6 6.2529 -1.3122 0.0065 26 6 5.5022 -2.4862 0.0143 27 6 4.1421 -2.4495 0.0151 28 6 3.4772 -1.2094 0.0076 29 7 2.1432 -1.1448 0.0073 30 1 -0.3633 0.0066 1.0277 31 1 -0.3633 0.8867 -0.5195 32 1 -0.3633 -0.8932 -0.5081 33 1 1.6319 2.1461 -0.0005 34 1 2.7009 3.6818 -0.2112 35 1 2.6881 6.2116 -0.3280 36 1 4.1941 6.9137 -0.9662 37 1 3.5528 4.6348 -2.5060 38 1 2.3814 4.3273 -5.6142 39 1 3.8587 5.9676 1.7526 40 1 6.8654 5.6592 0.9162 41 1 6.2391 6.5602 2.3983 42 1 5.1873 4.4173 3.2578 43 1 5.8130 3.5151 1.7762 44 1 6.2356 0.8095 -0.0066 45 1 7.3314 -1.3690 0.0053 46 1 6.0081 -3.4404 0.0205 47 1 3.5750 -3.3685 0.0216 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699598868.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:48 Heat of formation + Delta-G solvation = 60.936258 kcal Electronic energy + Delta-G solvation = -29256.465018 eV Core-core repulsion = 25405.339641 eV Total energy + Delta-G solvation = -3851.125377 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.16956 -39.62710 -37.41152 -37.26580 -35.10562 -33.74363 -33.24478 -32.04875 -31.25942 -30.00766 -28.16859 -27.71583 -24.74939 -24.04189 -23.06439 -22.48673 -22.16033 -21.55508 -20.52885 -20.18901 -18.06914 -17.57594 -17.42030 -16.98246 -16.08406 -15.49916 -15.33312 -15.02274 -14.82472 -14.75335 -14.57323 -14.28500 -13.68616 -13.60600 -13.27717 -13.22636 -13.07165 -13.05652 -12.91165 -12.32974 -12.17423 -11.78178 -11.61710 -11.41746 -11.40868 -11.29545 -11.10347 -10.95602 -10.84210 -10.44681 -10.29296 -10.24988 -10.07707 -9.97157 -9.74009 -9.21600 -8.96996 -8.80506 -8.72041 -8.23729 -7.02858 -5.82896 -3.13733 0.09723 0.75910 1.72564 2.74455 3.11499 3.20561 3.39547 3.44494 3.45613 4.02420 4.06337 4.11649 4.46368 4.50442 4.62458 4.71087 4.81223 4.82381 5.04175 5.10068 5.14103 5.20804 5.26158 5.32537 5.39955 5.45665 5.49619 5.49793 5.65833 5.72963 5.74019 5.79961 5.82434 5.87214 6.00841 6.04593 6.08229 6.15881 6.29496 6.30085 6.36258 6.44456 6.48810 6.53896 6.62810 6.79805 6.88042 7.62725 7.65044 7.84251 8.30433 8.34391 9.46209 10.00596 10.35886 11.39036 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008960 B = 0.003800 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3124.291355 B = 7366.001300 C = 9023.086819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.156 3.844 3 C -0.130 4.130 4 C -0.062 4.062 5 C 0.565 3.435 6 O -0.532 6.532 7 N -0.693 5.693 8 C 0.168 3.832 9 H 0.091 0.909 10 C 0.148 3.852 11 N -0.732 5.732 12 C -0.246 4.246 13 H 0.071 0.929 14 C -0.009 4.009 15 N -0.930 5.930 16 Si 0.907 3.093 17 H -0.286 1.286 18 H -0.291 1.291 19 H -0.285 1.285 20 C -0.164 4.164 21 C -0.169 4.169 22 C -0.185 4.185 23 C -0.070 4.070 24 C -0.094 4.094 25 C -0.126 4.126 26 C -0.098 4.098 27 C -0.103 4.103 28 C 0.129 3.871 29 N -0.465 5.465 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.144 0.856 34 H 0.405 0.595 35 H 0.026 0.974 36 H 0.038 0.962 37 H 0.386 0.614 38 H 0.257 0.743 39 H 0.104 0.896 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.083 0.917 43 H 0.117 0.883 44 H 0.170 0.830 45 H 0.126 0.874 46 H 0.127 0.873 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.107 -10.094 14.750 17.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.004 3.996 3 C -0.151 4.151 4 C -0.072 4.072 5 C 0.352 3.648 6 O -0.412 6.412 7 N -0.343 5.343 8 C 0.064 3.936 9 H 0.109 0.891 10 C 0.020 3.980 11 N -0.377 5.377 12 C -0.377 4.377 13 H 0.089 0.911 14 C -0.206 4.206 15 N -0.578 5.578 16 Si 0.738 3.262 17 H -0.212 1.212 18 H -0.217 1.217 19 H -0.212 1.212 20 C -0.184 4.184 21 C -0.206 4.206 22 C -0.222 4.222 23 C -0.073 4.073 24 C -0.112 4.112 25 C -0.144 4.144 26 C -0.118 4.118 27 C -0.121 4.121 28 C 0.007 3.993 29 N -0.175 5.175 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.162 0.838 34 H 0.241 0.759 35 H 0.043 0.957 36 H 0.055 0.945 37 H 0.220 0.780 38 H 0.066 0.934 39 H 0.122 0.878 40 H 0.113 0.887 41 H 0.109 0.891 42 H 0.102 0.898 43 H 0.135 0.865 44 H 0.187 0.813 45 H 0.144 0.856 46 H 0.145 0.855 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.475 -10.762 14.721 18.402 hybrid contribution -0.552 1.122 -0.910 1.547 sum 1.923 -9.640 13.810 16.952 Atomic orbital electron populations 1.20813 0.88103 1.04233 1.03308 1.21397 0.97314 0.87609 0.93321 1.22303 0.93654 0.99976 0.99170 1.20375 0.93672 0.93494 0.99709 1.17936 0.87053 0.83302 0.76482 1.90492 1.13534 1.86484 1.50642 1.45890 1.11283 1.05255 1.71838 1.20900 0.96886 0.82820 0.93033 0.89051 1.20928 0.95863 0.94001 0.87225 1.42346 1.65357 1.19532 1.10471 1.19152 1.26145 0.98094 0.94315 0.91135 1.24747 1.01288 0.96885 0.97635 1.69657 1.50526 1.17714 1.19891 0.86273 0.79947 0.79540 0.80419 1.21225 1.21675 1.21211 1.22649 0.95299 1.04341 0.96113 1.22897 0.95357 0.98876 1.03520 1.23270 1.04072 0.96351 0.98543 1.18653 0.95148 0.92031 1.01473 1.22083 0.93452 1.00470 0.95206 1.21063 1.00404 0.92309 1.00669 1.20950 0.93732 0.98776 0.98346 1.20720 0.94192 0.95971 1.01256 1.18827 0.88802 0.92960 0.98666 1.67615 1.08821 1.28851 1.12169 0.90080 0.89922 0.90137 0.83836 0.75899 0.95657 0.94469 0.78033 0.93364 0.87759 0.88662 0.89146 0.89843 0.86546 0.81335 0.85555 0.85486 0.84840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 10.14 36.01 0.37 -0.67 16 2 C 0.16 2.06 6.78 -82.56 -0.56 1.51 16 3 C -0.13 -1.76 9.21 -38.96 -0.36 -2.12 16 4 C -0.06 -0.95 5.94 -104.34 -0.62 -1.57 16 5 C 0.57 9.13 7.09 -12.30 -0.09 9.04 16 6 O -0.53 -9.25 10.55 5.33 0.06 -9.20 16 7 N -0.69 -10.71 4.45 -54.73 -0.24 -10.95 16 8 C 0.17 2.69 2.43 -67.93 -0.17 2.53 16 9 H 0.09 1.66 7.33 -51.93 -0.38 1.28 16 10 C 0.15 2.75 5.80 -4.04 -0.02 2.73 16 11 N -0.73 -17.53 5.43 -59.91 -0.33 -17.85 16 12 C -0.25 -6.60 9.99 -15.06 -0.15 -6.75 16 13 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 14 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 15 N -0.93 -27.53 13.06 55.49 0.72 -26.81 16 16 Si 0.91 21.85 29.55 -169.99 -5.02 16.83 16 17 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 20 C -0.16 -2.21 5.36 -90.62 -0.49 -2.69 16 21 C -0.17 -2.11 10.18 -26.69 -0.27 -2.38 16 22 C -0.19 -2.43 9.74 -26.69 -0.26 -2.69 16 23 C -0.07 -1.09 5.76 -106.52 -0.61 -1.71 16 24 C -0.09 -1.37 9.25 -39.60 -0.37 -1.73 16 25 C -0.13 -1.49 9.96 -39.88 -0.40 -1.89 16 26 C -0.10 -1.06 9.94 -39.95 -0.40 -1.45 16 27 C -0.10 -1.27 9.98 -39.43 -0.39 -1.66 16 28 C 0.13 1.92 6.61 -84.87 -0.56 1.36 16 29 N -0.46 -6.82 10.19 -7.25 -0.07 -6.89 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.72 8.07 -51.93 -0.42 0.30 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.14 1.63 6.55 -52.48 -0.34 1.28 16 34 H 0.40 5.91 6.78 -40.82 -0.28 5.63 16 35 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.39 9.93 7.33 -40.82 -0.30 9.63 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.10 1.30 8.11 -51.93 -0.42 0.88 16 40 H 0.09 1.24 8.05 -51.93 -0.42 0.83 16 41 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.12 1.76 5.02 -51.93 -0.26 1.50 16 44 H 0.17 2.61 4.98 -52.48 -0.26 2.35 16 45 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 46 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 47 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 385.59 15.07 5.81 5.81 Total: -1.00 -31.62 385.59 -10.95 -42.57 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: -6.43 Total: 16.99 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: -5.44 Total: -10.50 kcal Atomic # 7 Polarization: -62.59 SS G_CDS: 0.08 Total: -62.51 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.06 Total: -9.20 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.62 -10.95 -42.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699598868.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.509 kcal (2) G-P(sol) polarization free energy of solvation -31.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds