Wall clock time and date at job start Sat Apr 11 2020 05:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38621 * 120.32818 * 2 1 4 4 C 1.38592 * 118.49093 * 179.70633 * 3 2 1 5 5 C 1.39311 * 119.05513 * 0.55643 * 4 3 2 6 6 C 1.48165 * 119.72263 * 179.71339 * 5 4 3 7 7 O 1.21520 * 120.00089 * 359.71807 * 6 5 4 8 8 N 1.34773 * 120.00238 * 179.72853 * 6 5 4 9 9 C 1.46505 * 120.00358 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.47115 * 179.97438 * 9 8 6 11 11 H 1.09004 * 109.46980 * 65.00127 * 10 9 8 12 12 N 1.46500 * 109.47263 * 304.99595 * 10 9 8 13 13 C 1.36937 * 120.00221 * 302.87878 * 12 10 9 14 14 H 1.07996 * 119.99926 * 5.09053 * 13 12 10 15 15 C 1.38811 * 119.99675 * 185.09982 * 13 12 10 16 16 N 1.31613 * 120.00270 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99613 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47027 * 59.99708 * 17 15 13 19 19 H 1.48496 * 109.47228 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47261 * 299.99822 * 17 15 13 21 21 C 1.50704 * 109.46829 * 184.99654 * 10 9 8 22 22 C 1.38229 * 119.99929 * 333.21196 * 21 10 9 23 23 C 1.38239 * 119.99761 * 179.78796 * 22 21 10 24 24 C 1.38240 * 119.99998 * 0.43596 * 23 22 21 25 25 C 1.38231 * 119.99731 * 359.81846 * 24 23 22 26 26 C 1.38238 * 120.00524 * 359.97251 * 25 24 23 27 27 N 1.32712 * 120.55436 * 359.43007 * 5 4 3 28 28 C 1.31531 * 121.64379 * 0.28061 * 27 5 4 29 29 C 1.50700 * 119.54862 * 180.02562 * 28 27 5 30 30 H 1.09000 * 109.47573 * 270.02672 * 1 2 3 31 31 H 1.09005 * 109.46871 * 30.02307 * 1 2 3 32 32 H 1.09000 * 109.47582 * 150.01849 * 1 2 3 33 33 H 1.08002 * 120.75343 * 359.97438 * 3 2 1 34 34 H 1.07998 * 120.47154 * 180.28368 * 4 3 2 35 35 H 0.97003 * 120.00237 * 0.26278 * 8 6 5 36 36 H 1.08997 * 109.46872 * 299.99704 * 9 8 6 37 37 H 1.08997 * 109.46973 * 59.99166 * 9 8 6 38 38 H 0.97001 * 119.99835 * 122.87073 * 12 10 9 39 39 H 0.97004 * 120.00278 * 180.02562 * 16 15 13 40 40 H 1.07994 * 120.00429 * 359.97438 * 22 21 10 41 41 H 1.08004 * 120.00305 * 180.27584 * 23 22 21 42 42 H 1.08000 * 119.99739 * 179.83173 * 24 23 22 43 43 H 1.08004 * 120.00166 * 179.97438 * 25 24 23 44 44 H 1.07992 * 120.00432 * 180.02562 * 26 25 24 45 45 H 1.08997 * 109.47123 * 89.99490 * 29 28 27 46 46 H 1.08995 * 109.46875 * 209.99955 * 29 28 27 47 47 H 1.09002 * 109.46963 * 329.99469 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1965 0.0000 4 6 3.5921 1.1521 0.0062 5 6 4.2293 -0.0867 0.0004 6 6 5.7096 -0.1514 0.0006 7 8 6.3626 0.8734 0.0005 8 7 6.3319 -1.3469 0.0005 9 6 7.7955 -1.4109 0.0000 10 6 8.2420 -2.8743 0.0007 11 1 7.9323 -3.3491 -0.9304 12 7 7.6273 -3.5720 1.1328 13 6 7.8257 -3.1149 2.4083 14 1 8.3661 -2.1947 2.5742 15 6 7.3324 -3.8346 3.4879 16 7 6.6736 -4.9558 3.2857 17 14 7.6037 -3.2114 5.2279 18 1 6.9823 -1.8709 5.3761 19 1 6.9832 -4.1536 6.1935 20 1 9.0608 -3.1141 5.4973 21 6 9.7425 -2.9416 0.1240 22 6 10.5207 -1.8918 -0.3266 23 6 11.8969 -1.9516 -0.2095 24 6 12.4952 -3.0652 0.3500 25 6 11.7171 -4.1173 0.7957 26 6 10.3408 -4.0556 0.6826 27 7 3.5217 -1.2094 0.0005 28 6 2.2064 -1.1961 0.0004 29 6 1.4500 -2.4995 0.0010 30 1 -0.3634 0.0005 1.0276 31 1 -0.3633 0.8898 -0.5142 32 1 -0.3634 -0.8901 -0.5135 33 1 1.6847 2.1419 -0.0004 34 1 4.1693 2.0649 0.0110 35 1 5.8107 -2.1650 -0.0035 36 1 8.1806 -0.9136 -0.8901 37 1 8.1812 -0.9132 0.8897 38 1 7.0795 -4.3576 0.9788 39 1 6.3285 -5.4585 4.0401 40 1 10.0536 -1.0236 -0.7673 41 1 12.5048 -1.1295 -0.5574 42 1 13.5704 -3.1131 0.4390 43 1 12.1845 -4.9875 1.2324 44 1 9.7329 -4.8773 1.0312 45 1 1.2676 -2.8132 1.0288 46 1 0.4979 -2.3672 -0.5129 47 1 2.0373 -3.2607 -0.5125 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713700454.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:14 Heat of formation + Delta-G solvation = 16.530066 kcal Electronic energy + Delta-G solvation = -28819.596792 eV Core-core repulsion = 24966.545819 eV Total energy + Delta-G solvation = -3853.050974 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.74345 -40.55626 -39.85927 -37.45127 -35.28333 -34.84116 -34.01045 -33.54986 -31.80439 -31.08177 -29.54312 -29.04094 -27.90303 -26.21306 -24.40068 -23.77034 -23.21398 -22.69647 -21.53934 -21.22948 -19.35857 -19.01967 -17.85450 -17.57958 -16.97023 -16.55113 -16.41345 -16.21182 -15.99584 -15.75389 -15.65597 -15.41113 -15.17717 -14.87823 -14.47672 -14.16730 -14.13286 -13.89639 -13.73686 -13.64136 -13.52571 -13.45482 -13.14279 -13.04335 -12.95244 -12.87704 -12.58295 -12.31357 -12.12324 -11.93575 -11.83244 -11.55082 -11.35499 -10.99068 -10.76532 -10.48442 -10.08632 -9.72451 -9.65080 -9.48724 -9.01327 -7.92651 -5.20174 -0.37202 0.23633 0.60627 0.68506 1.40632 1.41325 1.46636 1.69079 2.17834 2.53703 2.81723 3.03442 3.09291 3.39938 3.71452 3.80649 3.85264 3.89400 3.98033 4.00761 4.19814 4.26215 4.27344 4.33605 4.38489 4.49998 4.58114 4.63901 4.67541 4.73515 4.76492 4.83936 4.91126 4.91829 5.04878 5.09086 5.15404 5.23241 5.25147 5.28456 5.32911 5.45941 5.55316 5.71310 5.72179 5.77222 5.96561 6.26687 6.30716 6.47946 6.86008 7.17101 7.37603 8.02724 8.31128 9.29021 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010857 B = 0.003460 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2578.476925 B = 8089.970187 C = 9504.877095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.109 4.109 3 C -0.079 4.079 4 C -0.124 4.124 5 C 0.050 3.950 6 C 0.559 3.441 7 O -0.579 6.579 8 N -0.681 5.681 9 C 0.122 3.878 10 C 0.200 3.800 11 H 0.092 0.908 12 N -0.713 5.713 13 C -0.206 4.206 14 H 0.056 0.944 15 C -0.057 4.057 16 N -0.956 5.956 17 Si 0.944 3.056 18 H -0.293 1.293 19 H -0.292 1.292 20 H -0.283 1.283 21 C -0.094 4.094 22 C -0.133 4.133 23 C -0.128 4.128 24 C -0.130 4.130 25 C -0.138 4.138 26 C -0.098 4.098 27 N -0.477 5.477 28 C 0.105 3.895 29 C -0.105 4.105 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.179 0.821 34 H 0.147 0.853 35 H 0.413 0.587 36 H 0.078 0.922 37 H 0.041 0.959 38 H 0.380 0.620 39 H 0.249 0.751 40 H 0.129 0.871 41 H 0.144 0.856 42 H 0.144 0.856 43 H 0.128 0.872 44 H 0.103 0.897 45 H 0.081 0.919 46 H 0.112 0.888 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.209 8.107 -11.220 16.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.111 4.111 3 C -0.104 4.104 4 C -0.145 4.145 5 C -0.087 4.087 6 C 0.345 3.655 7 O -0.460 6.460 8 N -0.329 5.329 9 C -0.003 4.003 10 C 0.090 3.910 11 H 0.110 0.890 12 N -0.352 5.352 13 C -0.338 4.338 14 H 0.074 0.926 15 C -0.250 4.250 16 N -0.606 5.606 17 Si 0.775 3.225 18 H -0.221 1.221 19 H -0.218 1.218 20 H -0.210 1.210 21 C -0.097 4.097 22 C -0.152 4.152 23 C -0.146 4.146 24 C -0.148 4.148 25 C -0.156 4.156 26 C -0.117 4.117 27 N -0.189 5.189 28 C -0.036 4.036 29 C -0.162 4.162 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.196 0.804 34 H 0.164 0.836 35 H 0.250 0.750 36 H 0.096 0.904 37 H 0.059 0.941 38 H 0.213 0.787 39 H 0.058 0.942 40 H 0.147 0.853 41 H 0.162 0.838 42 H 0.162 0.838 43 H 0.145 0.855 44 H 0.121 0.879 45 H 0.099 0.901 46 H 0.130 0.870 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.186 8.066 -11.056 15.458 hybrid contribution -0.306 0.193 1.511 1.554 sum -7.492 8.260 -9.545 14.679 Atomic orbital electron populations 1.20978 0.86708 1.05139 1.04063 1.21404 0.99873 0.92562 0.97300 1.21895 0.92313 1.00105 0.96123 1.22223 0.96410 0.97958 0.97884 1.20984 0.93209 0.90906 1.03610 1.18299 0.87018 0.83671 0.76531 1.90687 1.66940 1.35022 1.53382 1.45647 1.07902 1.08495 1.70860 1.21789 0.79340 0.98641 1.00562 1.19488 0.88921 0.90962 0.91600 0.88970 1.42343 1.58411 1.33205 1.01250 1.18989 1.27496 1.03184 0.84136 0.92617 1.25148 1.02216 0.97674 0.99957 1.69735 1.43615 1.17174 1.30106 0.85667 0.77509 0.76769 0.82549 1.22058 1.21830 1.20993 1.20577 0.96339 0.94589 0.98212 1.21302 0.94574 0.98206 1.01080 1.21380 0.94475 0.98833 0.99941 1.21376 1.00648 0.93667 0.99106 1.21352 0.93534 0.99925 1.00765 1.20977 0.94855 0.98286 0.97567 1.67351 1.09736 1.30651 1.11212 1.21784 0.88552 0.97462 0.95769 1.20892 1.00014 0.91437 1.03834 0.89398 0.89090 0.89130 0.80384 0.83565 0.75026 0.90391 0.94078 0.78717 0.94232 0.85303 0.83796 0.83843 0.85453 0.87931 0.90085 0.87000 0.91316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 9.62 71.23 0.69 -0.44 16 2 C -0.11 -2.13 5.91 -19.70 -0.12 -2.25 16 3 C -0.08 -1.58 9.85 22.45 0.22 -1.36 16 4 C -0.12 -3.46 9.63 22.61 0.22 -3.24 16 5 C 0.05 1.75 6.75 41.91 0.28 2.03 16 6 C 0.56 22.45 7.81 86.88 0.68 23.13 16 7 O -0.58 -25.35 16.32 -3.78 -0.06 -25.42 16 8 N -0.68 -26.89 5.38 -465.66 -2.50 -29.39 16 9 C 0.12 4.70 3.91 86.38 0.34 5.04 16 10 C 0.20 7.67 3.26 44.25 0.14 7.81 16 11 H 0.09 3.15 8.14 -2.38 -0.02 3.14 16 12 N -0.71 -33.34 3.85 -326.49 -1.26 -34.59 16 13 C -0.21 -11.04 8.54 84.03 0.72 -10.32 16 14 H 0.06 3.11 6.99 -2.91 -0.02 3.09 16 15 C -0.06 -3.22 5.50 84.86 0.47 -2.75 16 16 N -0.96 -56.33 13.06 21.65 0.28 -56.05 16 17 Si 0.94 47.46 29.55 68.60 2.03 49.48 16 18 H -0.29 -14.88 7.11 99.48 0.71 -14.17 16 19 H -0.29 -14.62 7.11 99.48 0.71 -13.92 16 20 H -0.28 -13.99 7.11 99.48 0.71 -13.28 16 21 C -0.09 -3.52 5.16 -19.87 -0.10 -3.62 16 22 C -0.13 -4.29 9.14 22.27 0.20 -4.08 16 23 C -0.13 -3.60 10.05 22.27 0.22 -3.37 16 24 C -0.13 -3.65 10.05 22.27 0.22 -3.42 16 25 C -0.14 -4.52 10.05 22.27 0.22 -4.30 16 26 C -0.10 -3.82 8.95 22.27 0.20 -3.62 16 27 N -0.48 -16.06 9.45 -173.08 -1.64 -17.70 16 28 C 0.11 2.72 6.78 42.68 0.29 3.01 16 29 C -0.10 -2.06 9.77 71.24 0.70 -1.36 16 30 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.09 0.58 8.09 -2.38 -0.02 0.56 16 32 H 0.09 0.68 5.95 -2.39 -0.01 0.67 16 33 H 0.18 2.05 8.06 -2.91 -0.02 2.03 16 34 H 0.15 3.94 7.64 -2.91 -0.02 3.92 16 35 H 0.41 16.56 7.47 -92.71 -0.69 15.86 16 36 H 0.08 2.67 6.86 -2.39 -0.02 2.66 16 37 H 0.04 1.83 7.21 -2.39 -0.02 1.81 16 38 H 0.38 18.97 8.04 -92.71 -0.75 18.22 16 39 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 40 H 0.13 3.77 6.22 -2.91 -0.02 3.75 16 41 H 0.14 3.09 8.06 -2.91 -0.02 3.06 16 42 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 43 H 0.13 3.68 8.06 -2.91 -0.02 3.66 16 44 H 0.10 4.52 7.51 -2.91 -0.02 4.49 16 45 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.11 1.32 5.93 -2.39 -0.01 1.31 16 47 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -71.37 390.67 2.02 -69.34 By element: Atomic # 1 Polarization: 47.87 SS G_CDS: -0.42 Total: 47.44 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: 5.59 Total: -3.12 kcal Atomic # 7 Polarization: -132.62 SS G_CDS: -5.11 Total: -137.73 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -0.06 Total: -25.42 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 2.03 Total: 49.48 kcal Total: -71.37 2.02 -69.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713700454.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.874 kcal (2) G-P(sol) polarization free energy of solvation -71.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds