Wall clock time and date at job start Sat Apr 11 2020 05:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38633 * 120.32189 * 2 1 4 4 C 1.38590 * 118.48374 * 179.72999 * 3 2 1 5 5 C 1.39309 * 119.06273 * 0.48794 * 4 3 2 6 6 C 1.48170 * 119.72228 * 179.77694 * 5 4 3 7 7 O 1.21510 * 119.99866 * 359.72515 * 6 5 4 8 8 N 1.34776 * 119.99578 * 180.02562 * 6 5 4 9 9 C 1.46502 * 119.99981 * 179.72461 * 8 6 5 10 10 C 1.52997 * 109.47432 * 179.97438 * 9 8 6 11 11 H 1.09003 * 109.46921 * 295.00087 * 10 9 8 12 12 N 1.46505 * 109.46990 * 54.99748 * 10 9 8 13 13 C 1.36935 * 119.99597 * 54.93941 * 12 10 9 14 14 H 1.08000 * 120.00393 * 5.04847 * 13 12 10 15 15 C 1.38817 * 119.99545 * 185.04772 * 13 12 10 16 16 N 1.31616 * 119.99936 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 120.00197 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.47171 * 89.99764 * 17 15 13 19 19 H 1.48495 * 109.47312 * 209.99706 * 17 15 13 20 20 H 1.48501 * 109.47245 * 330.00291 * 17 15 13 21 21 C 1.50697 * 109.47173 * 174.99916 * 10 9 8 22 22 C 1.38239 * 119.99694 * 206.68728 * 21 10 9 23 23 C 1.38236 * 119.99555 * 179.79147 * 22 21 10 24 24 C 1.38238 * 120.00133 * 0.43560 * 23 22 21 25 25 C 1.38234 * 120.00116 * 359.82054 * 24 23 22 26 26 C 1.38236 * 120.00088 * 26.96361 * 21 10 9 27 27 N 1.32719 * 120.54858 * 359.49881 * 5 4 3 28 28 C 1.31518 * 121.64784 * 0.25525 * 27 5 4 29 29 C 1.50697 * 119.55055 * 179.97438 * 28 27 5 30 30 H 1.09003 * 109.47186 * 270.02446 * 1 2 3 31 31 H 1.09003 * 109.47264 * 30.02500 * 1 2 3 32 32 H 1.09002 * 109.47113 * 150.02552 * 1 2 3 33 33 H 1.07996 * 120.75549 * 359.97438 * 3 2 1 34 34 H 1.08002 * 120.46496 * 180.26598 * 4 3 2 35 35 H 0.96996 * 119.99918 * 359.72481 * 8 6 5 36 36 H 1.09002 * 109.46686 * 300.00517 * 9 8 6 37 37 H 1.09004 * 109.46827 * 59.99837 * 9 8 6 38 38 H 0.96998 * 119.99937 * 234.93766 * 12 10 9 39 39 H 0.97003 * 120.00471 * 180.02562 * 16 15 13 40 40 H 1.07994 * 119.99946 * 359.97438 * 22 21 10 41 41 H 1.07996 * 119.99832 * 180.27912 * 23 22 21 42 42 H 1.07997 * 119.99926 * 179.83557 * 24 23 22 43 43 H 1.07991 * 120.00370 * 179.97438 * 25 24 23 44 44 H 1.08003 * 119.99987 * 359.97307 * 26 21 10 45 45 H 1.08999 * 109.47121 * 89.99956 * 29 28 27 46 46 H 1.08995 * 109.47261 * 210.00196 * 29 28 27 47 47 H 1.08998 * 109.47181 * 330.00159 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1967 0.0000 4 6 3.5920 1.1522 0.0057 5 6 4.2294 -0.0865 0.0009 6 6 5.7097 -0.1510 0.0019 7 8 6.3625 0.8738 0.0019 8 7 6.3320 -1.3465 -0.0032 9 6 7.7956 -1.4104 -0.0083 10 6 8.2423 -2.8737 -0.0130 11 1 7.9361 -3.3500 0.9185 12 7 7.6232 -3.5697 -1.1438 13 6 7.7798 -3.0848 -2.4148 14 1 8.4256 -2.2379 -2.5941 15 6 7.1086 -3.6821 -3.4730 16 7 7.2595 -3.2165 -4.6948 17 14 5.9912 -5.1466 -3.1630 18 1 4.6135 -4.6677 -2.8840 19 1 5.9776 -6.0216 -4.3627 20 1 6.4941 -5.9146 -1.9958 21 6 9.7422 -2.9407 -0.1420 22 6 10.3383 -4.0523 -0.7078 23 6 11.7139 -4.1118 -0.8301 24 6 12.4940 -3.0637 -0.3785 25 6 11.8983 -1.9545 0.1921 26 6 10.5224 -1.8931 0.3105 27 7 3.5217 -1.2093 0.0010 28 6 2.2065 -1.1960 0.0005 29 6 1.4502 -2.4994 0.0000 30 1 -0.3634 0.0004 1.0277 31 1 -0.3634 0.8898 -0.5142 32 1 -0.3633 -0.8902 -0.5134 33 1 1.6846 2.1419 -0.0004 34 1 4.1692 2.0651 0.0102 35 1 5.8108 -2.1646 -0.0036 36 1 8.1779 -0.9105 -0.8983 37 1 8.1840 -0.9151 0.8817 38 1 7.1024 -4.3738 -0.9921 39 1 6.7902 -3.6335 -5.4343 40 1 9.7290 -4.8728 -1.0569 41 1 12.1793 -4.9782 -1.2762 42 1 13.5689 -3.1114 -0.4717 43 1 12.5077 -1.1359 0.5453 44 1 10.0569 -1.0264 0.7562 45 1 1.2675 -2.8139 1.0275 46 1 0.4983 -2.3669 -0.5141 47 1 2.0377 -3.2602 -0.5138 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713700455.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:17 Heat of formation + Delta-G solvation = 40.089831 kcal Electronic energy + Delta-G solvation = -28925.124312 eV Core-core repulsion = 25073.094967 eV Total energy + Delta-G solvation = -3852.029346 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.63653 -39.22312 -38.50727 -35.98611 -34.05170 -33.46838 -32.96830 -31.90052 -30.53203 -29.87306 -28.63376 -27.96227 -26.79640 -24.34472 -23.14821 -22.43609 -21.95679 -21.53008 -20.15670 -19.68006 -18.02882 -17.77313 -16.65621 -16.40653 -15.32611 -15.27514 -15.16974 -14.88772 -14.68390 -14.52055 -14.22365 -14.05089 -13.95893 -13.35738 -13.21265 -13.09035 -12.89148 -12.83655 -12.74929 -12.60910 -12.44168 -12.16197 -12.14335 -11.95036 -11.57214 -11.46040 -10.99706 -10.82920 -10.61553 -10.45086 -10.11165 -9.99196 -9.80316 -9.56804 -9.36908 -9.05557 -8.85589 -8.42982 -8.35238 -8.13313 -7.38572 -5.77498 -3.17410 0.70590 1.20122 1.89219 1.97417 2.98254 3.32486 3.36827 3.42919 3.52169 3.98828 4.16439 4.32816 4.54463 4.55895 4.70769 4.73453 4.96420 5.16340 5.20030 5.27258 5.36084 5.40508 5.44115 5.45489 5.50193 5.51521 5.55804 5.57430 5.61262 5.72250 5.76711 5.87683 5.97159 5.99452 6.05571 6.13412 6.18050 6.24804 6.51537 6.59434 6.60418 6.65196 6.90300 7.00917 7.06262 7.26744 7.55908 7.75672 7.95789 8.10934 8.39062 8.64138 9.15113 9.86176 10.02635 11.40199 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011400 B = 0.003610 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.618342 B = 7753.487497 C = 9361.555191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.124 4.124 3 C -0.083 4.083 4 C -0.117 4.117 5 C 0.090 3.910 6 C 0.567 3.433 7 O -0.547 6.547 8 N -0.679 5.679 9 C 0.114 3.886 10 C 0.203 3.797 11 H 0.075 0.925 12 N -0.740 5.740 13 C -0.237 4.237 14 H 0.091 0.909 15 C 0.012 3.988 16 N -0.928 5.928 17 Si 0.879 3.121 18 H -0.283 1.283 19 H -0.294 1.294 20 H -0.278 1.278 21 C -0.078 4.078 22 C -0.076 4.076 23 C -0.128 4.128 24 C -0.133 4.133 25 C -0.130 4.130 26 C -0.124 4.124 27 N -0.451 5.451 28 C 0.125 3.875 29 C -0.108 4.108 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.139 0.861 34 H 0.147 0.853 35 H 0.411 0.589 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.365 0.635 39 H 0.258 0.742 40 H 0.126 0.874 41 H 0.113 0.887 42 H 0.111 0.889 43 H 0.112 0.888 44 H 0.119 0.881 45 H 0.078 0.922 46 H 0.078 0.922 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.322 3.114 13.518 16.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.126 4.126 3 C -0.109 4.109 4 C -0.138 4.138 5 C -0.049 4.049 6 C 0.351 3.649 7 O -0.425 6.425 8 N -0.328 5.328 9 C -0.011 4.011 10 C 0.093 3.907 11 H 0.093 0.907 12 N -0.381 5.381 13 C -0.367 4.367 14 H 0.109 0.891 15 C -0.184 4.184 16 N -0.575 5.575 17 Si 0.710 3.290 18 H -0.210 1.210 19 H -0.220 1.220 20 H -0.204 1.204 21 C -0.081 4.081 22 C -0.094 4.094 23 C -0.146 4.146 24 C -0.151 4.151 25 C -0.148 4.148 26 C -0.143 4.143 27 N -0.162 5.162 28 C -0.015 4.015 29 C -0.165 4.165 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.157 0.843 34 H 0.165 0.835 35 H 0.248 0.752 36 H 0.096 0.904 37 H 0.078 0.922 38 H 0.198 0.802 39 H 0.069 0.931 40 H 0.143 0.857 41 H 0.131 0.869 42 H 0.129 0.871 43 H 0.131 0.869 44 H 0.137 0.863 45 H 0.097 0.903 46 H 0.097 0.903 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.313 3.144 13.279 15.482 hybrid contribution -1.339 -0.568 -0.284 1.482 sum -8.652 2.576 12.995 15.823 Atomic orbital electron populations 1.20839 0.90108 1.03414 1.02663 1.20901 0.97599 0.93641 1.00474 1.21451 0.93637 0.98210 0.97559 1.22086 0.94795 0.99107 0.97837 1.21237 0.94534 0.89405 0.99742 1.17769 0.85545 0.84192 0.77439 1.90739 1.65844 1.34318 1.51639 1.45544 1.07889 1.08279 1.71109 1.21874 0.79174 0.98422 1.01621 1.19287 0.88591 0.91516 0.91342 0.90710 1.42789 1.61907 1.29984 1.03437 1.18896 1.23132 1.12867 0.81797 0.89140 1.24651 0.99640 0.98875 0.95283 1.69701 1.46406 1.42831 0.98595 0.86647 0.81878 0.83631 0.76861 1.20962 1.22009 1.20393 1.20586 0.96569 0.93879 0.97021 1.20978 0.93836 0.98403 0.96192 1.21099 0.94247 0.98711 1.00588 1.20993 0.99090 0.94633 1.00376 1.20980 0.94870 0.97979 1.00938 1.21110 0.93695 0.98429 1.01039 1.67417 1.07964 1.30550 1.10311 1.21138 0.89255 0.95205 0.95914 1.20805 0.99345 0.93264 1.03100 0.90697 0.91236 0.90592 0.84316 0.83502 0.75236 0.90426 0.92163 0.80176 0.93131 0.85655 0.86875 0.87111 0.86944 0.86322 0.90310 0.90349 0.90056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 9.62 36.00 0.35 -0.47 16 2 C -0.12 -1.38 5.91 -104.36 -0.62 -2.00 16 3 C -0.08 -0.94 9.85 -39.31 -0.39 -1.32 16 4 C -0.12 -1.67 9.63 -39.05 -0.38 -2.05 16 5 C 0.09 1.53 6.75 -83.01 -0.56 0.97 16 6 C 0.57 10.95 7.81 -12.18 -0.10 10.86 16 7 O -0.55 -11.65 16.32 5.36 0.09 -11.57 16 8 N -0.68 -12.75 5.38 -61.14 -0.33 -13.08 16 9 C 0.11 2.12 3.87 -4.04 -0.02 2.10 16 10 C 0.20 3.65 3.26 -69.08 -0.23 3.43 16 11 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 12 N -0.74 -15.77 3.61 -54.55 -0.20 -15.97 16 13 C -0.24 -6.25 9.01 -15.06 -0.14 -6.38 16 14 H 0.09 2.70 7.41 -52.49 -0.39 2.31 16 15 C 0.01 0.33 5.50 -17.43 -0.10 0.23 16 16 N -0.93 -28.75 13.97 55.49 0.78 -27.98 16 17 Si 0.88 21.24 27.79 -169.99 -4.72 16.51 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 20 H -0.28 -6.16 6.45 56.52 0.36 -5.79 16 21 C -0.08 -1.39 5.19 -104.62 -0.54 -1.94 16 22 C -0.08 -1.39 9.03 -39.58 -0.36 -1.75 16 23 C -0.13 -2.10 10.05 -39.58 -0.40 -2.50 16 24 C -0.13 -2.00 10.05 -39.58 -0.40 -2.40 16 25 C -0.13 -1.96 10.05 -39.58 -0.40 -2.36 16 26 C -0.12 -2.03 9.14 -39.58 -0.36 -2.39 16 27 N -0.45 -7.40 9.45 -6.06 -0.06 -7.46 16 28 C 0.13 1.67 6.78 -82.61 -0.56 1.11 16 29 C -0.11 -1.12 9.77 36.00 0.35 -0.76 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 32 H 0.08 0.49 5.95 -51.93 -0.31 0.18 16 33 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 34 H 0.15 1.99 7.64 -52.49 -0.40 1.59 16 35 H 0.41 7.59 7.47 -40.82 -0.30 7.29 16 36 H 0.08 1.70 7.30 -51.93 -0.38 1.33 16 37 H 0.06 1.00 6.85 -51.93 -0.36 0.65 16 38 H 0.36 7.62 5.87 -40.82 -0.24 7.38 16 39 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 40 H 0.13 2.41 7.51 -52.49 -0.39 2.01 16 41 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 42 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 43 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 44 H 0.12 1.77 6.22 -52.48 -0.33 1.45 16 45 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.08 0.62 5.93 -51.93 -0.31 0.32 16 47 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 387.79 15.07 5.84 5.84 Total: -1.00 -33.48 387.79 -9.81 -43.28 By element: Atomic # 1 Polarization: 24.42 SS G_CDS: -6.38 Total: 18.04 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: -4.83 Total: -7.63 kcal Atomic # 7 Polarization: -64.67 SS G_CDS: 0.19 Total: -64.48 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.09 Total: -11.57 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.72 Total: 16.51 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.48 -9.81 -43.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713700455.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.373 kcal (2) G-P(sol) polarization free energy of solvation -33.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds