Wall clock time and date at job start Sat Apr 11 2020 05:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39438 * 119.53924 * 2 1 4 4 C 1.35987 * 121.07985 * 180.02562 * 3 2 1 5 5 C 1.40826 * 119.74161 * 359.97438 * 4 3 2 6 6 N 1.33263 * 120.98583 * 180.26900 * 5 4 3 7 7 C 1.31876 * 121.30198 * 180.27381 * 6 5 4 8 8 C 1.48274 * 119.24305 * 179.72100 * 7 6 5 9 9 O 1.21505 * 120.00105 * 179.73323 * 8 7 6 10 10 N 1.34776 * 120.00061 * 359.73153 * 8 7 6 11 11 C 1.47015 * 125.64737 * 359.96447 * 10 8 7 12 12 C 1.54323 * 107.27232 * 178.97563 * 11 10 8 13 13 C 1.55162 * 102.94224 * 337.80223 * 12 11 10 14 14 H 1.08997 * 111.03475 * 277.42194 * 13 12 11 15 15 C 1.52993 * 111.00826 * 153.57556 * 13 12 11 16 16 N 1.46496 * 109.47551 * 181.34993 * 15 13 12 17 17 C 1.36934 * 120.00548 * 179.97438 * 16 15 13 18 18 H 1.08004 * 119.99288 * 0.02562 * 17 16 15 19 19 C 1.38805 * 120.00389 * 180.02562 * 17 16 15 20 20 N 1.31624 * 120.00257 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47174 * 270.00277 * 21 19 17 23 23 H 1.48501 * 109.47062 * 30.00228 * 21 19 17 24 24 H 1.48499 * 109.46981 * 150.00382 * 21 19 17 25 25 C 1.47420 * 125.64717 * 179.97438 * 10 8 7 26 26 C 1.40281 * 121.51562 * 359.44582 * 7 6 5 27 27 C 1.36508 * 119.81754 * 0.27657 * 26 7 6 28 28 C 1.40753 * 118.24443 * 359.97438 * 27 26 7 29 29 C 1.36129 * 119.54088 * 179.97438 * 2 1 3 30 30 H 1.08995 * 109.47079 * 90.00075 * 1 2 3 31 31 H 1.09001 * 109.47269 * 210.00138 * 1 2 3 32 32 H 1.09005 * 109.46612 * 329.99943 * 1 2 3 33 33 H 1.07998 * 119.46087 * 0.02562 * 3 2 1 34 34 H 1.08002 * 120.13235 * 180.02562 * 4 3 2 35 35 H 1.09008 * 109.88174 * 298.38597 * 11 10 8 36 36 H 1.09000 * 109.88842 * 59.39891 * 11 10 8 37 37 H 1.09005 * 110.71947 * 219.44298 * 12 11 10 38 38 H 1.09004 * 110.72586 * 96.16275 * 12 11 10 39 39 H 1.09004 * 109.46862 * 61.35192 * 15 13 12 40 40 H 1.09004 * 109.46998 * 301.35669 * 15 13 12 41 41 H 0.96999 * 119.99694 * 0.02562 * 16 15 13 42 42 H 0.97001 * 119.99885 * 179.97438 * 20 19 17 43 43 H 1.09012 * 110.36673 * 85.25809 * 25 10 8 44 44 H 1.08996 * 110.46650 * 322.98846 * 25 10 8 45 45 H 1.07998 * 120.09541 * 180.24684 * 26 7 6 46 46 H 1.08001 * 120.87426 * 179.97438 * 27 26 7 47 47 H 1.08003 * 120.17765 * 0.02800 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1945 1.2131 0.0000 4 6 3.5539 1.2497 -0.0005 5 6 4.2851 0.0462 -0.0005 6 7 5.6177 0.0531 0.0043 7 6 6.3087 -1.0702 -0.0010 8 6 7.7902 -1.0092 -0.0015 9 8 8.4405 -2.0356 -0.0016 10 7 8.4156 0.1847 -0.0021 11 6 7.7548 1.4980 -0.0029 12 6 8.8650 2.5696 0.0231 13 6 10.0780 1.7990 0.6084 14 1 10.0307 1.7634 1.6967 15 6 11.3974 2.4155 0.1395 16 7 12.5176 1.6445 0.6843 17 6 13.8053 2.0113 0.3971 18 1 13.9950 2.8693 -0.2307 19 6 14.8666 1.2804 0.9129 20 7 16.1044 1.6333 0.6373 21 14 14.5384 -0.2033 1.9995 22 1 14.4694 0.2281 3.4187 23 1 13.2489 -0.8275 1.6086 24 1 15.6360 -1.1899 1.8348 25 6 9.8754 0.3900 -0.0021 26 6 5.6744 -2.3214 -0.0005 27 6 4.3111 -2.3912 0.0000 28 6 3.5824 -1.1870 0.0004 29 6 2.1782 -1.1843 0.0005 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5139 33 1 1.6383 2.1389 0.0004 34 1 4.0708 2.1980 -0.0001 35 1 7.1530 1.6096 -0.9049 36 1 7.1219 1.5952 0.8792 37 1 8.5853 3.3990 0.6727 38 1 9.0830 2.9238 -0.9845 39 1 11.4615 3.4460 0.4892 40 1 11.4399 2.3981 -0.9496 41 1 12.3472 0.8736 1.2479 42 1 16.8460 1.1227 0.9980 43 1 10.2629 0.3587 -1.0205 44 1 10.3663 -0.3642 0.6130 45 1 6.2629 -3.2269 -0.0009 46 1 3.8051 -3.3453 0.0000 47 1 1.6336 -2.1170 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714355281.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:37 Heat of formation + Delta-G solvation = 18.914100 kcal Electronic energy + Delta-G solvation = -28223.833054 eV Core-core repulsion = 24370.885460 eV Total energy + Delta-G solvation = -3852.947594 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.18078 -40.96968 -39.10698 -38.20216 -36.62843 -34.73725 -34.03886 -33.16162 -32.26304 -31.28925 -30.18379 -28.74115 -27.16019 -25.53468 -24.91938 -23.94383 -23.19557 -23.04304 -21.61605 -20.95979 -19.69816 -19.02558 -18.63379 -17.85514 -17.37855 -16.93444 -16.62170 -16.43244 -16.01948 -15.59835 -15.36033 -15.34669 -15.09882 -14.90768 -14.64934 -14.48413 -14.29012 -14.09530 -14.02168 -13.86503 -13.72651 -13.48881 -13.19588 -13.03570 -12.82302 -12.46116 -12.39892 -12.23360 -12.20759 -12.00038 -11.92840 -11.79355 -11.68991 -11.58246 -11.47373 -11.00181 -10.54679 -9.90602 -9.66430 -9.30726 -9.19787 -8.04560 -5.37078 -0.89347 -0.38268 0.88464 1.30011 1.35563 1.37710 1.44227 1.73018 2.11088 2.45446 2.81943 3.02669 3.26356 3.33993 3.53368 3.59349 3.63440 3.74162 3.76717 3.82918 3.97011 4.01556 4.16435 4.31616 4.32379 4.39191 4.41581 4.52375 4.63940 4.65985 4.75082 4.81559 4.85955 4.89451 4.91173 4.99574 5.00538 5.06806 5.07212 5.14731 5.21515 5.27164 5.31645 5.39985 5.44034 5.56913 5.74953 5.84886 6.19719 6.30596 6.52834 6.90477 7.06154 7.83017 8.00026 9.16837 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024442 B = 0.002228 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.271504 B =12561.694088 C =13464.551743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.071 4.071 3 C -0.094 4.094 4 C -0.095 4.095 5 C 0.093 3.907 6 N -0.440 5.440 7 C 0.096 3.904 8 C 0.569 3.431 9 O -0.575 6.575 10 N -0.598 5.598 11 C 0.124 3.876 12 C -0.116 4.116 13 C -0.099 4.099 14 H 0.087 0.913 15 C 0.167 3.833 16 N -0.762 5.762 17 C -0.230 4.230 18 H 0.063 0.937 19 C -0.061 4.061 20 N -0.981 5.981 21 Si 0.947 3.053 22 H -0.275 1.275 23 H -0.262 1.262 24 H -0.295 1.295 25 C 0.111 3.889 26 C -0.141 4.141 27 C -0.051 4.051 28 C -0.093 4.093 29 C -0.111 4.111 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.160 0.840 34 H 0.148 0.852 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.111 0.889 38 H 0.088 0.912 39 H 0.043 0.957 40 H 0.031 0.969 41 H 0.363 0.637 42 H 0.258 0.742 43 H 0.066 0.934 44 H 0.053 0.947 45 H 0.146 0.854 46 H 0.180 0.820 47 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -41.545 -2.457 -1.162 41.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.071 4.071 3 C -0.114 4.114 4 C -0.113 4.113 5 C -0.031 4.031 6 N -0.152 5.152 7 C -0.056 4.056 8 C 0.357 3.643 9 O -0.455 6.455 10 N -0.329 5.329 11 C 0.002 3.998 12 C -0.154 4.154 13 C -0.119 4.119 14 H 0.105 0.895 15 C 0.041 3.959 16 N -0.407 5.407 17 C -0.361 4.361 18 H 0.081 0.919 19 C -0.253 4.253 20 N -0.632 5.632 21 Si 0.775 3.225 22 H -0.201 1.201 23 H -0.187 1.187 24 H -0.222 1.222 25 C -0.011 4.011 26 C -0.162 4.162 27 C -0.076 4.076 28 C -0.095 4.095 29 C -0.129 4.129 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.177 0.823 34 H 0.166 0.834 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.129 0.871 38 H 0.107 0.893 39 H 0.061 0.939 40 H 0.049 0.951 41 H 0.196 0.804 42 H 0.067 0.933 43 H 0.085 0.915 44 H 0.072 0.928 45 H 0.164 0.836 46 H 0.198 0.802 47 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -40.705 -2.052 -1.262 40.777 hybrid contribution 0.801 -1.867 0.538 2.102 sum -39.904 -3.919 -0.724 40.103 Atomic orbital electron populations 1.20948 0.88456 1.04342 1.03633 1.20197 0.98214 0.92600 0.96102 1.21238 0.93426 0.99341 0.97398 1.21070 0.94382 0.96517 0.99374 1.19327 0.88610 0.94583 1.00613 1.67988 1.08167 1.29031 1.10061 1.20948 0.92491 0.90988 1.01212 1.18102 0.86955 0.82328 0.76917 1.90765 1.67174 1.34554 1.52998 1.48486 1.07751 1.06758 1.69857 1.22234 0.94722 0.79346 1.03481 1.22778 0.91841 0.97545 1.03240 1.22471 0.95368 0.93247 1.00776 0.89501 1.20751 0.84296 0.94476 0.96394 1.42801 1.02237 1.34462 1.61208 1.19066 0.83077 1.09667 1.24337 0.91888 1.25419 0.94866 1.02294 1.02679 1.69866 0.98455 1.43539 1.51329 0.85520 0.77414 0.80055 0.79480 1.20141 1.18669 1.22186 1.22275 0.79903 0.97936 1.01016 1.21770 0.96313 0.97928 1.00184 1.21808 0.92526 0.99330 0.93969 1.19251 0.96109 0.93690 1.00430 1.21156 0.91052 1.00021 1.00697 0.89753 0.90263 0.90000 0.82281 0.83378 0.90017 0.89954 0.87069 0.89329 0.93909 0.95140 0.80429 0.93349 0.91529 0.92816 0.83650 0.80227 0.82524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.28 9.98 71.24 0.71 0.43 16 2 C -0.07 -0.58 5.85 -20.06 -0.12 -0.69 16 3 C -0.09 -0.83 9.58 22.04 0.21 -0.62 16 4 C -0.09 -1.30 9.99 22.38 0.22 -1.08 16 5 C 0.09 1.78 6.61 40.47 0.27 2.05 16 6 N -0.44 -10.32 6.76 -177.77 -1.20 -11.52 16 7 C 0.10 2.57 6.73 42.31 0.28 2.85 16 8 C 0.57 18.84 7.84 86.91 0.68 19.52 16 9 O -0.58 -22.99 16.54 -3.73 -0.06 -23.05 16 10 N -0.60 -18.13 3.33 -814.75 -2.71 -20.84 16 11 C 0.12 2.79 5.39 86.73 0.47 3.25 16 12 C -0.12 -2.40 6.42 31.78 0.20 -2.19 16 13 C -0.10 -2.90 3.10 -9.41 -0.03 -2.93 16 14 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 15 C 0.17 6.16 5.71 86.38 0.49 6.66 16 16 N -0.76 -36.46 5.26 -343.47 -1.81 -38.26 16 17 C -0.23 -13.43 10.47 84.03 0.88 -12.55 16 18 H 0.06 3.95 8.06 -2.91 -0.02 3.93 16 19 C -0.06 -3.70 5.50 84.86 0.47 -3.24 16 20 N -0.98 -64.24 13.97 21.65 0.30 -63.94 16 21 Si 0.95 47.91 27.74 68.60 1.90 49.81 16 22 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 23 H -0.26 -12.47 6.52 99.48 0.65 -11.82 16 24 H -0.30 -15.07 7.11 99.48 0.71 -14.37 16 25 C 0.11 3.73 6.08 86.85 0.53 4.26 16 26 C -0.14 -3.12 9.54 22.36 0.21 -2.90 16 27 C -0.05 -0.78 9.88 22.48 0.22 -0.56 16 28 C -0.09 -1.49 5.75 -21.22 -0.12 -1.61 16 29 C -0.11 -1.11 9.37 22.31 0.21 -0.90 16 30 H 0.08 0.10 8.14 -2.39 -0.02 0.08 16 31 H 0.08 0.08 8.07 -2.39 -0.02 0.06 16 32 H 0.08 0.05 8.08 -2.38 -0.02 0.03 16 33 H 0.16 0.49 8.06 -2.91 -0.02 0.47 16 34 H 0.15 1.65 8.06 -2.91 -0.02 1.62 16 35 H 0.08 1.73 7.54 -2.38 -0.02 1.72 16 36 H 0.08 1.76 7.39 -2.39 -0.02 1.74 16 37 H 0.11 1.75 8.14 -2.38 -0.02 1.73 16 38 H 0.09 1.72 8.04 -2.39 -0.02 1.70 16 39 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 40 H 0.03 1.14 8.10 -2.39 -0.02 1.13 16 41 H 0.36 17.09 5.39 -92.71 -0.50 16.59 16 42 H 0.26 16.10 8.31 -92.71 -0.77 15.33 16 43 H 0.07 2.35 8.00 -2.38 -0.02 2.33 16 44 H 0.05 2.07 8.04 -2.39 -0.02 2.05 16 45 H 0.15 3.22 7.60 -2.91 -0.02 3.19 16 46 H 0.18 1.33 8.06 -2.91 -0.02 1.31 16 47 H 0.16 0.70 8.06 -2.91 -0.02 0.68 16 Total: -1.00 -79.87 385.52 2.65 -77.23 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: 0.42 Total: 20.81 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: 5.80 Total: 9.76 kcal Atomic # 7 Polarization: -129.15 SS G_CDS: -5.41 Total: -134.56 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.06 Total: -23.05 kcal Atomic # 14 Polarization: 47.91 SS G_CDS: 1.90 Total: 49.81 kcal Total: -79.87 2.65 -77.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714355281.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.142 kcal (2) G-P(sol) polarization free energy of solvation -79.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds