Wall clock time and date at job start Sat Apr 11 2020 05:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39237 * 119.15506 * 2 1 4 4 C 1.36636 * 119.90582 * 180.02562 * 3 2 1 5 5 C 1.40794 * 118.15398 * 359.97438 * 4 3 2 6 6 C 1.40478 * 121.26584 * 180.02562 * 5 4 3 7 7 C 1.36315 * 120.08790 * 179.97438 * 6 5 4 8 8 C 1.38908 * 121.05896 * 359.97438 * 7 6 5 9 9 C 1.38708 * 120.72389 * 359.97438 * 8 7 6 10 10 C 1.47439 * 120.32953 * 179.97438 * 9 8 7 11 11 O 1.21609 * 119.99747 * 180.02562 * 10 9 8 12 12 N 1.34771 * 120.00225 * 0.02562 * 10 9 8 13 13 C 1.46500 * 120.00024 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.47230 * 180.02562 * 13 12 10 15 15 N 1.46500 * 109.47230 * 179.97438 * 14 13 12 16 16 C 1.36932 * 119.99807 * 270.00321 * 15 14 13 17 17 H 1.08000 * 120.00117 * 141.42687 * 16 15 14 18 18 C 1.38816 * 119.99818 * 321.41668 * 16 15 14 19 19 N 1.31623 * 119.99931 * 157.77058 * 18 16 15 20 20 Si 1.86803 * 120.00175 * 337.77304 * 18 16 15 21 21 H 1.48498 * 109.46986 * 95.67874 * 20 18 16 22 22 H 1.48504 * 109.46925 * 215.67983 * 20 18 16 23 23 H 1.48496 * 109.46924 * 335.67577 * 20 18 16 24 24 C 1.46497 * 120.00012 * 89.99518 * 15 14 13 25 25 C 1.52999 * 117.50070 * 183.18837 * 24 15 14 26 26 C 1.53004 * 117.49689 * 114.52812 * 24 15 14 27 27 C 1.41559 * 118.94350 * 0.24576 * 5 4 3 28 28 N 1.31228 * 119.15797 * 180.02562 * 2 1 3 29 29 H 1.09004 * 109.46984 * 90.00061 * 1 2 3 30 30 H 1.08999 * 109.47214 * 210.00437 * 1 2 3 31 31 H 1.09001 * 109.46853 * 330.00134 * 1 2 3 32 32 H 1.08001 * 120.04458 * 0.04579 * 3 2 1 33 33 H 1.07991 * 120.92345 * 180.02562 * 4 3 2 34 34 H 1.08004 * 119.95324 * 359.95344 * 6 5 4 35 35 H 1.07999 * 119.46847 * 179.97438 * 7 6 5 36 36 H 1.08005 * 119.63844 * 179.97438 * 8 7 6 37 37 H 0.97002 * 119.99899 * 0.02562 * 12 10 9 38 38 H 1.09000 * 109.47187 * 60.00267 * 13 12 10 39 39 H 1.09006 * 109.47293 * 300.00148 * 13 12 10 40 40 H 1.09000 * 109.46976 * 59.99943 * 14 13 12 41 41 H 1.09000 * 109.46545 * 300.00191 * 14 13 12 42 42 H 0.96995 * 119.99994 * 180.02562 * 19 18 16 43 43 H 1.08998 * 115.55277 * 328.86629 * 24 15 14 44 44 H 1.09001 * 117.49538 * 0.02562 * 25 24 15 45 45 H 1.08993 * 117.49724 * 145.02047 * 25 24 15 46 46 H 1.08997 * 117.50415 * 214.98024 * 26 24 15 47 47 H 1.09000 * 117.49671 * 359.97438 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1853 1.2160 0.0000 4 6 3.5515 1.2339 -0.0005 5 6 4.2321 0.0013 -0.0005 6 6 5.6357 -0.0565 -0.0005 7 6 6.2699 -1.2632 0.0000 8 6 5.5500 -2.4512 0.0011 9 6 4.1630 -2.4393 0.0022 10 6 3.4076 -3.7055 0.0028 11 8 2.1916 -3.6880 0.0033 12 7 4.0646 -4.8822 0.0028 13 6 3.3140 -6.1403 0.0028 14 6 4.2915 -7.3174 0.0034 15 7 3.5408 -8.5755 0.0041 16 6 3.1900 -9.1628 1.1903 17 1 2.2263 -9.6396 1.2925 18 6 4.0730 -9.1454 2.2612 19 7 3.6217 -9.2945 3.4887 20 14 5.9016 -8.9103 1.9605 21 1 6.2501 -7.4764 2.1262 22 1 6.6721 -9.7230 2.9358 23 1 6.2361 -9.3449 0.5805 24 6 3.1655 -9.2051 -1.2643 25 6 2.3184 -10.4775 -1.1980 26 6 3.7948 -10.5603 -1.5938 27 6 3.4787 -1.1972 -0.0053 28 7 2.1463 -1.1460 -0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6323 2.1436 0.0007 33 1 4.0943 2.1675 -0.0001 34 1 6.2130 0.8562 -0.0013 35 1 7.3494 -1.2960 -0.0004 36 1 6.0760 -3.3944 0.0011 37 1 5.0345 -4.8961 0.0028 38 1 2.6866 -6.1890 -0.8872 39 1 2.6865 -6.1890 0.8928 40 1 4.9185 -7.2684 0.8936 41 1 4.9192 -7.2688 -0.8863 42 1 4.2387 -9.2820 4.2370 43 1 2.9819 -8.5209 -2.0927 44 1 2.0401 -10.8459 -0.2106 45 1 1.5777 -10.6304 -1.9828 46 1 4.0248 -10.7677 -2.6388 47 1 4.4884 -10.9830 -0.8670 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714667108.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:44 Heat of formation + Delta-G solvation = 80.981246 kcal Electronic energy + Delta-G solvation = -28503.882276 eV Core-core repulsion = 24653.626115 eV Total energy + Delta-G solvation = -3850.256161 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.15283 -39.10797 -37.42674 -37.20286 -34.85258 -33.63613 -33.19867 -32.13740 -31.44120 -30.41646 -28.11021 -27.66499 -24.47716 -24.12911 -23.47337 -22.61929 -22.05344 -21.37596 -20.26690 -19.64115 -18.29568 -17.98016 -16.61631 -16.45934 -15.94431 -15.61989 -15.59665 -15.09616 -14.98860 -14.86389 -14.46857 -14.09214 -13.91131 -13.75240 -13.31634 -13.10507 -13.06832 -12.88033 -12.51077 -12.37933 -12.24534 -12.21744 -11.84532 -11.65411 -11.57497 -11.50582 -10.87442 -10.73768 -10.66109 -10.42974 -10.04604 -9.93725 -9.82958 -9.52095 -9.44405 -9.11880 -8.91473 -8.65922 -8.54510 -8.37035 -6.80848 -6.06487 -3.50592 -0.02473 0.59565 1.59358 2.56492 3.20522 3.35482 3.39548 3.41712 3.45724 4.00401 4.04566 4.31646 4.42635 4.44079 4.55331 4.60969 4.76009 4.80451 4.84165 4.94150 5.04889 5.14624 5.22743 5.31923 5.46109 5.48424 5.64216 5.69366 5.76222 5.78534 5.80881 5.82744 5.91505 5.96385 5.99167 6.07364 6.09157 6.18773 6.29208 6.42331 6.46177 6.57228 6.62141 6.75889 6.87616 6.96043 7.10988 7.82637 7.95019 7.98914 8.35337 8.62158 8.90821 9.62454 10.01255 11.08042 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014461 B = 0.002771 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.811548 B =10102.607088 C =10807.216313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.157 3.843 3 C -0.172 4.172 4 C -0.058 4.058 5 C -0.117 4.117 6 C -0.074 4.074 7 C -0.126 4.126 8 C -0.065 4.065 9 C -0.103 4.103 10 C 0.547 3.453 11 O -0.499 6.499 12 N -0.726 5.726 13 C 0.103 3.897 14 C 0.131 3.869 15 N -0.568 5.568 16 C -0.273 4.273 17 H 0.085 0.915 18 C 0.040 3.960 19 N -0.892 5.892 20 Si 0.874 3.126 21 H -0.285 1.285 22 H -0.300 1.300 23 H -0.265 1.265 24 C 0.119 3.881 25 C -0.186 4.186 26 C -0.222 4.222 27 C 0.168 3.832 28 N -0.436 5.436 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.137 0.863 33 H 0.140 0.860 34 H 0.132 0.868 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.391 0.609 38 H 0.061 0.939 39 H 0.077 0.923 40 H 0.059 0.941 41 H 0.047 0.953 42 H 0.265 0.735 43 H 0.092 0.908 44 H 0.104 0.896 45 H 0.078 0.922 46 H 0.074 0.926 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.225 21.959 -9.320 24.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.004 3.996 3 C -0.192 4.192 4 C -0.084 4.084 5 C -0.119 4.119 6 C -0.093 4.093 7 C -0.144 4.144 8 C -0.086 4.086 9 C -0.107 4.107 10 C 0.332 3.668 11 O -0.373 6.373 12 N -0.379 5.379 13 C -0.022 4.022 14 C 0.005 3.995 15 N -0.287 5.287 16 C -0.401 4.401 17 H 0.102 0.898 18 C -0.161 4.161 19 N -0.532 5.532 20 Si 0.703 3.297 21 H -0.213 1.213 22 H -0.228 1.228 23 H -0.190 1.190 24 C 0.010 3.990 25 C -0.225 4.225 26 C -0.263 4.263 27 C 0.044 3.956 28 N -0.144 5.144 29 H 0.099 0.901 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.155 0.845 33 H 0.157 0.843 34 H 0.150 0.850 35 H 0.152 0.848 36 H 0.153 0.847 37 H 0.225 0.775 38 H 0.079 0.921 39 H 0.095 0.905 40 H 0.077 0.923 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.110 0.890 44 H 0.122 0.878 45 H 0.096 0.904 46 H 0.092 0.908 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.936 21.050 -9.096 23.118 hybrid contribution 2.201 0.834 0.067 2.354 sum 5.137 21.884 -9.029 24.225 Atomic orbital electron populations 1.20792 0.88531 1.03810 1.03337 1.21733 0.97609 0.88023 0.92202 1.21784 0.95058 0.99392 1.02977 1.21426 0.94490 0.96946 0.95525 1.18825 0.94792 0.94008 1.04306 1.21120 0.92552 0.98619 0.97016 1.20826 1.00601 0.91911 1.01103 1.21499 0.92636 0.99242 0.95225 1.20067 0.93177 0.92858 1.04552 1.17896 0.87689 0.82955 0.78282 1.90850 1.12613 1.86815 1.47013 1.46041 1.10053 1.06252 1.75561 1.22220 0.96110 0.81154 1.02683 1.21319 0.93131 0.85177 0.99858 1.43504 1.64677 1.18975 1.01518 1.18746 0.99896 1.34752 0.86732 0.89770 1.25510 0.97700 0.97705 0.95216 1.69866 1.34730 1.50632 0.97959 0.86973 0.87684 0.76742 0.78269 1.21342 1.22762 1.18993 1.21176 1.01309 0.87020 0.89459 1.23074 0.92966 1.03757 1.02664 1.23381 0.96337 1.06774 0.99825 1.18590 0.89383 0.91330 0.96252 1.68187 1.07733 1.27674 1.10801 0.90114 0.89752 0.90695 0.84527 0.84268 0.84978 0.84816 0.84693 0.77476 0.92066 0.90477 0.92274 0.93489 0.92552 0.88978 0.87807 0.90382 0.90774 0.89287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 10.15 36.00 0.37 -0.67 16 2 C 0.16 1.96 6.78 -82.48 -0.56 1.40 16 3 C -0.17 -1.60 9.64 -39.79 -0.38 -1.98 16 4 C -0.06 -0.52 9.90 -39.19 -0.39 -0.91 16 5 C -0.12 -1.34 5.74 -106.82 -0.61 -1.96 16 6 C -0.07 -0.65 9.75 -39.43 -0.38 -1.04 16 7 C -0.13 -1.11 9.93 -40.03 -0.40 -1.51 16 8 C -0.07 -0.73 9.52 -39.16 -0.37 -1.10 16 9 C -0.10 -1.55 5.91 -104.61 -0.62 -2.17 16 10 C 0.55 10.01 7.76 -12.52 -0.10 9.92 16 11 O -0.50 -11.04 15.19 5.27 0.08 -10.96 16 12 N -0.73 -12.30 5.51 -61.37 -0.34 -12.64 16 13 C 0.10 2.05 6.00 -4.04 -0.02 2.03 16 14 C 0.13 2.71 4.66 -4.04 -0.02 2.69 16 15 N -0.57 -13.15 2.39 -165.66 -0.40 -13.55 16 16 C -0.27 -7.41 8.96 -15.06 -0.13 -7.55 16 17 H 0.08 2.49 6.86 -52.49 -0.36 2.13 16 18 C 0.04 1.13 5.30 -17.43 -0.09 1.04 16 19 N -0.89 -26.78 13.97 55.49 0.78 -26.01 16 20 Si 0.87 21.35 25.08 -169.99 -4.26 17.08 16 21 H -0.29 -6.63 6.69 56.52 0.38 -6.25 16 22 H -0.30 -7.52 7.11 56.52 0.40 -7.11 16 23 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 24 C 0.12 2.38 6.56 -67.93 -0.45 1.94 16 25 C -0.19 -3.57 9.80 -26.69 -0.26 -3.83 16 26 C -0.22 -4.20 10.36 -26.69 -0.28 -4.48 16 27 C 0.17 2.55 6.61 -84.58 -0.56 1.99 16 28 N -0.44 -7.17 8.33 -7.01 -0.06 -7.22 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.07 0.50 8.07 -51.93 -0.42 0.08 16 32 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 33 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 34 H 0.13 0.72 8.06 -52.48 -0.42 0.29 16 35 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 36 H 0.14 1.22 6.37 -52.48 -0.33 0.88 16 37 H 0.39 5.39 6.50 -40.82 -0.27 5.12 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.08 1.80 8.14 -51.93 -0.42 1.38 16 40 H 0.06 1.32 3.40 -51.93 -0.18 1.14 16 41 H 0.05 0.84 8.07 -51.93 -0.42 0.42 16 42 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 43 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 44 H 0.10 2.24 6.44 -51.93 -0.33 1.91 16 45 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 46 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 47 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 LS Contribution 386.08 15.07 5.82 5.82 Total: -1.00 -35.29 386.08 -10.18 -45.47 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -6.54 Total: 8.20 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -5.26 Total: -6.19 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: -0.02 Total: -59.42 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.08 Total: -10.96 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.26 Total: 17.08 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.29 -10.18 -45.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714667108.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.456 kcal (2) G-P(sol) polarization free energy of solvation -35.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds