Wall clock time and date at job start Sat Apr 11 2020 05:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39237 * 119.15506 * 2 1 4 4 C 1.36636 * 119.90582 * 180.02562 * 3 2 1 5 5 C 1.40794 * 118.15398 * 359.97438 * 4 3 2 6 6 C 1.40478 * 121.26584 * 180.02562 * 5 4 3 7 7 C 1.36315 * 120.08790 * 179.97438 * 6 5 4 8 8 C 1.38908 * 121.05896 * 359.97438 * 7 6 5 9 9 C 1.38708 * 120.72389 * 359.97438 * 8 7 6 10 10 C 1.47439 * 120.32953 * 179.97438 * 9 8 7 11 11 O 1.21609 * 119.99747 * 180.02562 * 10 9 8 12 12 N 1.34771 * 120.00225 * 0.02562 * 10 9 8 13 13 C 1.46500 * 120.00024 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.47230 * 180.02562 * 13 12 10 15 15 N 1.46500 * 109.47230 * 179.97438 * 14 13 12 16 16 C 1.36932 * 119.99807 * 270.00321 * 15 14 13 17 17 H 1.08000 * 120.00117 * 141.42687 * 16 15 14 18 18 C 1.38816 * 119.99818 * 321.41668 * 16 15 14 19 19 N 1.31623 * 119.99931 * 157.77058 * 18 16 15 20 20 Si 1.86803 * 120.00175 * 337.77304 * 18 16 15 21 21 H 1.48498 * 109.46986 * 95.67874 * 20 18 16 22 22 H 1.48504 * 109.46925 * 215.67983 * 20 18 16 23 23 H 1.48496 * 109.46924 * 335.67577 * 20 18 16 24 24 C 1.46497 * 120.00012 * 89.99518 * 15 14 13 25 25 C 1.52999 * 117.50070 * 183.18837 * 24 15 14 26 26 C 1.53004 * 117.49689 * 114.52812 * 24 15 14 27 27 C 1.41559 * 118.94350 * 0.24576 * 5 4 3 28 28 N 1.31228 * 119.15797 * 180.02562 * 2 1 3 29 29 H 1.09004 * 109.46984 * 90.00061 * 1 2 3 30 30 H 1.08999 * 109.47214 * 210.00437 * 1 2 3 31 31 H 1.09001 * 109.46853 * 330.00134 * 1 2 3 32 32 H 1.08001 * 120.04458 * 0.04579 * 3 2 1 33 33 H 1.07991 * 120.92345 * 180.02562 * 4 3 2 34 34 H 1.08004 * 119.95324 * 359.95344 * 6 5 4 35 35 H 1.07999 * 119.46847 * 179.97438 * 7 6 5 36 36 H 1.08005 * 119.63844 * 179.97438 * 8 7 6 37 37 H 0.97002 * 119.99899 * 0.02562 * 12 10 9 38 38 H 1.09000 * 109.47187 * 60.00267 * 13 12 10 39 39 H 1.09006 * 109.47293 * 300.00148 * 13 12 10 40 40 H 1.09000 * 109.46976 * 59.99943 * 14 13 12 41 41 H 1.09000 * 109.46545 * 300.00191 * 14 13 12 42 42 H 0.96995 * 119.99994 * 180.02562 * 19 18 16 43 43 H 1.08998 * 115.55277 * 328.86629 * 24 15 14 44 44 H 1.09001 * 117.49538 * 0.02562 * 25 24 15 45 45 H 1.08993 * 117.49724 * 145.02047 * 25 24 15 46 46 H 1.08997 * 117.50415 * 214.98024 * 26 24 15 47 47 H 1.09000 * 117.49671 * 359.97438 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1853 1.2160 0.0000 4 6 3.5515 1.2339 -0.0005 5 6 4.2321 0.0013 -0.0005 6 6 5.6357 -0.0565 -0.0005 7 6 6.2699 -1.2632 0.0000 8 6 5.5500 -2.4512 0.0011 9 6 4.1630 -2.4393 0.0022 10 6 3.4076 -3.7055 0.0028 11 8 2.1916 -3.6880 0.0033 12 7 4.0646 -4.8822 0.0028 13 6 3.3140 -6.1403 0.0028 14 6 4.2915 -7.3174 0.0034 15 7 3.5408 -8.5755 0.0041 16 6 3.1900 -9.1628 1.1903 17 1 2.2263 -9.6396 1.2925 18 6 4.0730 -9.1454 2.2612 19 7 3.6217 -9.2945 3.4887 20 14 5.9016 -8.9103 1.9605 21 1 6.2501 -7.4764 2.1262 22 1 6.6721 -9.7230 2.9358 23 1 6.2361 -9.3449 0.5805 24 6 3.1655 -9.2051 -1.2643 25 6 2.3184 -10.4775 -1.1980 26 6 3.7948 -10.5603 -1.5938 27 6 3.4787 -1.1972 -0.0053 28 7 2.1463 -1.1460 -0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6323 2.1436 0.0007 33 1 4.0943 2.1675 -0.0001 34 1 6.2130 0.8562 -0.0013 35 1 7.3494 -1.2960 -0.0004 36 1 6.0760 -3.3944 0.0011 37 1 5.0345 -4.8961 0.0028 38 1 2.6866 -6.1890 -0.8872 39 1 2.6865 -6.1890 0.8928 40 1 4.9185 -7.2684 0.8936 41 1 4.9192 -7.2688 -0.8863 42 1 4.2387 -9.2820 4.2370 43 1 2.9819 -8.5209 -2.0927 44 1 2.0401 -10.8459 -0.2106 45 1 1.5777 -10.6304 -1.9828 46 1 4.0248 -10.7677 -2.6388 47 1 4.4884 -10.9830 -0.8670 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714667108.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:43 Heat of formation + Delta-G solvation = 57.047415 kcal Electronic energy + Delta-G solvation = -28504.920125 eV Core-core repulsion = 24653.626115 eV Total energy + Delta-G solvation = -3851.294010 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.01963 -40.42374 -39.02928 -38.14347 -36.40750 -35.01046 -34.45302 -33.36491 -32.89538 -31.43596 -29.36983 -28.82080 -26.32234 -25.01242 -24.72033 -23.50013 -23.38971 -22.92496 -21.59199 -21.34366 -19.16982 -19.07380 -18.21940 -17.65793 -17.42675 -17.09721 -16.97444 -16.41316 -16.25297 -15.69011 -15.68909 -15.43656 -15.12547 -14.83323 -14.76065 -14.38457 -14.14233 -14.10464 -13.87376 -13.77636 -13.54455 -13.34224 -13.11589 -12.99162 -12.69771 -12.54751 -12.31656 -12.29642 -12.11409 -11.84058 -11.76386 -11.49638 -11.34270 -11.15379 -10.98504 -10.65826 -10.12951 -10.12062 -9.69473 -9.26619 -8.71667 -8.23147 -5.65311 -0.83783 -0.18873 0.75330 1.25574 1.40015 1.52260 1.76019 2.05134 2.20327 2.38900 2.99243 3.12637 3.19010 3.23777 3.31243 3.57263 3.67953 3.82463 3.94895 3.96894 4.07785 4.14103 4.18404 4.25953 4.35353 4.37055 4.43648 4.44913 4.54022 4.63862 4.69560 4.74230 4.88283 4.93586 4.93765 4.96548 5.00381 5.06597 5.09049 5.16014 5.21085 5.28493 5.35125 5.41650 5.52945 5.59296 5.84547 5.90838 6.17739 6.54818 6.93058 7.10955 7.28528 7.56608 7.96349 8.95813 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014461 B = 0.002771 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.811548 B =10102.607088 C =10807.216313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.139 3.861 3 C -0.176 4.176 4 C -0.044 4.044 5 C -0.137 4.137 6 C -0.050 4.050 7 C -0.133 4.133 8 C -0.046 4.046 9 C -0.155 4.155 10 C 0.543 3.457 11 O -0.554 6.554 12 N -0.716 5.716 13 C 0.122 3.878 14 C 0.134 3.866 15 N -0.582 5.582 16 C -0.260 4.260 17 H 0.041 0.959 18 C -0.021 4.021 19 N -0.947 5.947 20 Si 0.942 3.058 21 H -0.263 1.263 22 H -0.309 1.309 23 H -0.250 1.250 24 C 0.100 3.900 25 C -0.191 4.191 26 C -0.203 4.203 27 C 0.137 3.863 28 N -0.504 5.504 29 H 0.088 0.912 30 H 0.052 0.948 31 H 0.109 0.891 32 H 0.175 0.825 33 H 0.188 0.812 34 H 0.179 0.821 35 H 0.175 0.825 36 H 0.154 0.846 37 H 0.409 0.591 38 H 0.058 0.942 39 H 0.027 0.973 40 H 0.045 0.955 41 H 0.088 0.912 42 H 0.263 0.737 43 H 0.123 0.877 44 H 0.067 0.933 45 H 0.111 0.889 46 H 0.114 0.886 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.170 25.665 -11.827 29.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.013 4.013 3 C -0.196 4.196 4 C -0.070 4.070 5 C -0.139 4.139 6 C -0.069 4.069 7 C -0.150 4.150 8 C -0.066 4.066 9 C -0.159 4.159 10 C 0.331 3.669 11 O -0.432 6.432 12 N -0.370 5.370 13 C -0.004 4.004 14 C 0.009 3.991 15 N -0.302 5.302 16 C -0.390 4.390 17 H 0.058 0.942 18 C -0.217 4.217 19 N -0.590 5.590 20 Si 0.769 3.231 21 H -0.190 1.190 22 H -0.238 1.238 23 H -0.173 1.173 24 C -0.007 4.007 25 C -0.229 4.229 26 C -0.243 4.243 27 C 0.014 3.986 28 N -0.214 5.214 29 H 0.106 0.894 30 H 0.071 0.929 31 H 0.127 0.873 32 H 0.193 0.807 33 H 0.205 0.795 34 H 0.196 0.804 35 H 0.193 0.807 36 H 0.171 0.829 37 H 0.246 0.754 38 H 0.076 0.924 39 H 0.046 0.954 40 H 0.063 0.937 41 H 0.106 0.894 42 H 0.072 0.928 43 H 0.141 0.859 44 H 0.085 0.915 45 H 0.129 0.871 46 H 0.132 0.868 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.919 24.770 -11.651 28.235 hybrid contribution 0.870 -0.223 0.805 1.206 sum 7.789 24.547 -10.846 27.944 Atomic orbital electron populations 1.20860 0.87689 1.03904 1.03830 1.22278 0.98648 0.88720 0.91633 1.22125 0.95783 0.99307 1.02373 1.21997 0.94490 0.97669 0.92816 1.19195 0.96232 0.93635 1.04835 1.21699 0.91414 1.00536 0.93205 1.21283 1.02450 0.90794 1.00485 1.21840 0.91000 1.01482 0.92326 1.19898 0.94686 0.91150 1.10193 1.18573 0.87428 0.84243 0.76648 1.90803 1.15101 1.87662 1.49657 1.45824 1.10765 1.05025 1.75390 1.21756 0.95768 0.82751 1.00142 1.21371 0.92933 0.83891 1.00936 1.43594 1.65093 1.20109 1.01381 1.18537 0.98263 1.33635 0.88576 0.94160 1.26188 1.02520 0.98374 0.94648 1.70019 1.36230 1.53707 0.99047 0.85863 0.81168 0.77677 0.78373 1.18993 1.23811 1.17330 1.21518 1.02272 0.88036 0.88849 1.23055 0.94482 1.03381 1.01950 1.23351 0.95024 1.04570 1.01335 1.18942 0.89559 0.92813 0.97315 1.68105 1.09301 1.30182 1.13798 0.89374 0.92852 0.87259 0.80714 0.79529 0.80352 0.80724 0.82896 0.75376 0.92384 0.95426 0.93660 0.89421 0.92771 0.85909 0.91463 0.87095 0.86760 0.91776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.15 10.15 71.23 0.72 -1.42 16 2 C 0.14 3.55 6.78 42.89 0.29 3.84 16 3 C -0.18 -2.85 9.64 22.14 0.21 -2.64 16 4 C -0.04 -0.63 9.90 22.52 0.22 -0.40 16 5 C -0.14 -2.79 5.74 -21.29 -0.12 -2.91 16 6 C -0.05 -0.63 9.75 22.37 0.22 -0.42 16 7 C -0.13 -1.73 9.93 21.98 0.22 -1.51 16 8 C -0.05 -0.93 9.52 22.54 0.21 -0.72 16 9 C -0.16 -4.80 5.91 -19.86 -0.12 -4.92 16 10 C 0.54 21.14 7.76 86.67 0.67 21.81 16 11 O -0.55 -26.93 15.19 -4.06 -0.06 -26.99 16 12 N -0.72 -24.82 5.51 -466.34 -2.57 -27.38 16 13 C 0.12 5.05 6.00 86.38 0.52 5.57 16 14 C 0.13 5.44 4.66 86.38 0.40 5.84 16 15 N -0.58 -27.22 2.39 -678.03 -1.62 -28.85 16 16 C -0.26 -14.87 8.96 84.04 0.75 -14.11 16 17 H 0.04 2.60 6.86 -2.91 -0.02 2.58 16 18 C -0.02 -1.20 5.30 84.86 0.45 -0.75 16 19 N -0.95 -60.07 13.97 21.65 0.30 -59.76 16 20 Si 0.94 44.68 25.08 68.60 1.72 46.40 16 21 H -0.26 -11.44 6.69 99.48 0.67 -10.77 16 22 H -0.31 -15.08 7.11 99.48 0.71 -14.37 16 23 H -0.25 -11.10 7.11 99.48 0.71 -10.39 16 24 C 0.10 3.90 6.56 44.99 0.30 4.20 16 25 C -0.19 -7.26 9.80 30.62 0.30 -6.96 16 26 C -0.20 -7.23 10.36 30.62 0.32 -6.91 16 27 C 0.14 4.25 6.61 40.62 0.27 4.51 16 28 N -0.50 -17.72 8.33 -176.10 -1.47 -19.18 16 29 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 30 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.11 1.35 8.07 -2.39 -0.02 1.33 16 32 H 0.18 1.33 8.06 -2.91 -0.02 1.31 16 33 H 0.19 0.76 8.06 -2.92 -0.02 0.74 16 34 H 0.18 0.60 8.06 -2.91 -0.02 0.58 16 35 H 0.18 0.88 8.06 -2.91 -0.02 0.86 16 36 H 0.15 2.32 6.37 -2.91 -0.02 2.30 16 37 H 0.41 10.84 6.50 -92.71 -0.60 10.24 16 38 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 39 H 0.03 1.39 8.14 -2.38 -0.02 1.38 16 40 H 0.05 1.97 3.40 -2.39 -0.01 1.96 16 41 H 0.09 2.87 8.07 -2.39 -0.02 2.85 16 42 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 43 H 0.12 4.05 8.14 -2.39 -0.02 4.03 16 44 H 0.07 3.07 6.44 -2.39 -0.02 3.05 16 45 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 46 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 47 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 Total: -1.00 -88.91 386.08 2.50 -86.42 By element: Atomic # 1 Polarization: 26.89 SS G_CDS: 0.36 Total: 27.25 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: 5.84 Total: 2.11 kcal Atomic # 7 Polarization: -129.82 SS G_CDS: -5.35 Total: -135.18 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -0.06 Total: -26.99 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.72 Total: 46.40 kcal Total: -88.91 2.50 -86.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714667108.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.462 kcal (2) G-P(sol) polarization free energy of solvation -88.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds