Wall clock time and date at job start Sat Apr 11 2020 05:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36544 * 120.87516 * 2 1 4 4 C 1.40242 * 119.81831 * 179.97438 * 3 2 1 5 5 C 1.48282 * 119.23723 * 179.72019 * 4 3 2 6 6 O 1.21492 * 120.00207 * 0.02562 * 5 4 3 7 7 N 1.34785 * 119.99897 * 179.97438 * 5 4 3 8 8 C 1.46496 * 119.99784 * 179.97438 * 7 5 4 9 9 C 1.53008 * 109.46695 * 180.02562 * 8 7 5 10 10 N 1.46496 * 109.46695 * 179.97438 * 9 8 7 11 11 C 1.36942 * 120.00195 * 269.99827 * 10 9 8 12 12 H 1.07999 * 119.99627 * 144.92768 * 11 10 9 13 13 C 1.38810 * 119.99908 * 324.93333 * 11 10 9 14 14 N 1.31622 * 119.99615 * 337.93261 * 13 11 10 15 15 Si 1.86801 * 119.99978 * 157.93527 * 13 11 10 16 16 H 1.48503 * 109.46798 * 89.99855 * 15 13 11 17 17 H 1.48500 * 109.46932 * 209.99323 * 15 13 11 18 18 H 1.48494 * 109.47166 * 329.99794 * 15 13 11 19 19 C 1.46500 * 120.00173 * 90.00069 * 10 9 8 20 20 C 1.52998 * 117.50092 * 183.23484 * 19 10 9 21 21 C 1.52998 * 117.49906 * 114.57073 * 19 10 9 22 22 N 1.31902 * 121.51960 * 359.97438 * 4 3 2 23 23 C 1.33240 * 121.29928 * 0.02562 * 22 4 3 24 24 C 1.40831 * 120.98066 * 179.97438 * 23 22 4 25 25 C 1.35991 * 119.72985 * 179.97438 * 24 23 22 26 26 C 1.39439 * 121.09024 * 0.02562 * 25 24 23 27 27 C 1.36124 * 120.92130 * 359.93215 * 26 25 24 28 28 C 1.40425 * 119.65075 * 0.08969 * 27 26 25 29 29 H 1.09000 * 109.47294 * 90.00084 * 1 2 3 30 30 H 1.09004 * 109.46555 * 210.00012 * 1 2 3 31 31 H 1.09001 * 109.47213 * 329.99721 * 1 2 3 32 32 H 1.07992 * 120.09053 * 359.96070 * 3 2 1 33 33 H 0.96999 * 119.99349 * 0.02562 * 7 5 4 34 34 H 1.08998 * 109.46901 * 299.99976 * 8 7 5 35 35 H 1.08996 * 109.46901 * 60.00558 * 8 7 5 36 36 H 1.08997 * 109.46794 * 300.00364 * 9 8 7 37 37 H 1.09001 * 109.47067 * 60.00089 * 9 8 7 38 38 H 0.97010 * 119.99472 * 176.07395 * 14 13 11 39 39 H 1.08996 * 115.54856 * 328.90972 * 19 10 9 40 40 H 1.09000 * 117.49937 * 0.02562 * 20 19 10 41 41 H 1.09001 * 117.49888 * 145.02492 * 20 19 10 42 42 H 1.09003 * 117.50285 * 214.98334 * 21 19 10 43 43 H 1.09001 * 117.49972 * 359.97438 * 21 19 10 44 44 H 1.07992 * 120.13535 * 359.97438 * 24 23 22 45 45 H 1.08001 * 119.45342 * 179.97438 * 25 24 23 46 46 H 1.08003 * 119.54260 * 179.97438 * 26 25 24 47 47 H 1.08006 * 120.17637 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2077 1.1719 0.0000 4 6 3.6098 1.1461 0.0005 5 6 4.3578 2.4264 -0.0058 6 8 3.7558 3.4817 -0.0109 7 7 5.7057 2.4195 -0.0048 8 6 6.4446 3.6844 -0.0116 9 6 7.9475 3.3970 -0.0096 10 7 8.6864 4.6619 -0.0170 11 6 9.0321 5.2460 -1.2064 12 1 9.0387 6.3221 -1.2977 13 6 9.3740 4.4549 -2.2946 14 7 9.7884 3.2200 -2.1061 15 14 9.2459 5.1431 -4.0265 16 1 10.5330 5.7816 -4.4019 17 1 8.9443 4.0417 -4.9758 18 1 8.1586 6.1532 -4.0787 19 6 9.0557 5.3020 1.2479 20 6 9.7597 6.6584 1.1742 21 6 10.5460 5.4084 1.5772 22 7 4.2786 0.0091 0.0016 23 6 3.6482 -1.1647 0.0016 24 6 4.3689 -2.3746 0.0022 25 6 3.6995 -3.5584 0.0027 26 6 2.3056 -3.5973 0.0022 27 6 1.5738 -2.4496 0.0026 28 6 2.2293 -1.2077 0.0015 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3632 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5139 32 1 1.6835 2.1161 -0.0006 33 1 6.1862 1.5769 -0.0004 34 1 6.1848 4.2521 -0.9051 35 1 6.1837 4.2623 0.8749 36 1 8.2075 2.8290 0.8836 37 1 8.2081 2.8191 -0.8963 38 1 9.9728 2.6487 -2.8681 39 1 8.3678 5.1364 2.0770 40 1 9.9477 7.0748 0.1846 41 1 9.5351 7.3850 1.9551 42 1 10.8385 5.3132 2.6229 43 1 11.2518 5.0017 0.8529 44 1 5.4487 -2.3624 0.0021 45 1 4.2566 -4.4835 0.0027 46 1 1.7995 -4.5515 0.0023 47 1 0.4946 -2.4938 0.0026 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714671268.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:46 Heat of formation + Delta-G solvation = 66.078757 kcal Electronic energy + Delta-G solvation = -28185.963021 eV Core-core repulsion = 24335.060640 eV Total energy + Delta-G solvation = -3850.902381 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.24715 -39.23344 -37.21277 -36.94093 -35.11633 -34.66564 -33.17575 -31.16434 -30.67089 -30.53815 -28.14423 -27.70569 -25.13305 -24.09288 -23.74734 -21.91733 -21.53099 -21.23299 -20.25373 -19.73507 -18.31289 -17.98832 -17.21412 -16.23116 -15.61362 -15.51339 -15.39089 -15.20633 -14.85855 -14.60625 -14.44143 -14.34785 -13.86708 -13.73640 -13.54820 -13.37734 -13.04374 -12.78937 -12.60650 -12.46916 -11.92905 -11.89532 -11.84939 -11.64973 -11.53995 -11.03358 -10.72928 -10.70940 -10.44697 -10.32511 -10.20667 -10.10043 -9.83867 -9.63082 -9.53665 -9.27705 -9.03108 -8.57156 -8.48737 -8.42172 -6.62905 -5.83838 -3.43927 0.00109 0.47601 1.70293 2.33350 3.27488 3.31680 3.37263 3.42553 3.47124 3.96291 3.97011 4.21499 4.41573 4.45777 4.53682 4.59121 4.85760 4.90736 4.93058 5.04601 5.11192 5.21378 5.22862 5.29312 5.33457 5.44443 5.61703 5.73013 5.76465 5.83097 5.91218 6.04214 6.09639 6.11921 6.15683 6.21749 6.25190 6.30000 6.50370 6.53048 6.56273 6.62640 6.84009 6.99226 7.06866 7.22234 7.50030 7.57924 7.77664 7.95295 8.42167 8.49848 9.09623 9.72663 10.27475 11.12665 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013578 B = 0.002523 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.731136 B =11093.497463 C =11369.768223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.034 4.034 3 C -0.128 4.128 4 C 0.129 3.871 5 C 0.560 3.440 6 O -0.538 6.538 7 N -0.694 5.694 8 C 0.097 3.903 9 C 0.136 3.864 10 N -0.547 5.547 11 C -0.259 4.259 12 H 0.068 0.932 13 C 0.012 3.988 14 N -0.882 5.882 15 Si 0.896 3.104 16 H -0.285 1.285 17 H -0.288 1.288 18 H -0.276 1.276 19 C 0.119 3.881 20 C -0.195 4.195 21 C -0.220 4.220 22 N -0.446 5.446 23 C 0.128 3.872 24 C -0.083 4.083 25 C -0.107 4.107 26 C -0.111 4.111 27 C -0.103 4.103 28 C -0.089 4.089 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.150 0.850 33 H 0.409 0.591 34 H 0.069 0.931 35 H 0.054 0.946 36 H 0.033 0.967 37 H 0.107 0.893 38 H 0.255 0.745 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.092 0.908 44 H 0.140 0.860 45 H 0.131 0.869 46 H 0.127 0.873 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.706 -14.047 5.788 22.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.042 4.042 3 C -0.149 4.149 4 C -0.024 4.024 5 C 0.343 3.657 6 O -0.415 6.415 7 N -0.344 5.344 8 C -0.028 4.028 9 C 0.009 3.991 10 N -0.264 5.264 11 C -0.389 4.389 12 H 0.086 0.914 13 C -0.189 4.189 14 N -0.524 5.524 15 Si 0.724 3.276 16 H -0.212 1.212 17 H -0.214 1.214 18 H -0.202 1.202 19 C 0.010 3.990 20 C -0.233 4.233 21 C -0.261 4.261 22 N -0.158 5.158 23 C 0.004 3.996 24 C -0.101 4.101 25 C -0.127 4.127 26 C -0.129 4.129 27 C -0.122 4.122 28 C -0.091 4.091 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.168 0.832 33 H 0.244 0.756 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.051 0.949 37 H 0.124 0.876 38 H 0.065 0.935 39 H 0.105 0.895 40 H 0.116 0.884 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.110 0.890 44 H 0.158 0.842 45 H 0.149 0.851 46 H 0.145 0.855 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -16.055 -13.439 5.640 21.684 hybrid contribution -0.563 -0.118 -0.940 1.102 sum -16.618 -13.557 4.700 21.956 Atomic orbital electron populations 1.20866 0.89538 1.03705 1.03283 1.20125 0.96852 0.91686 0.95498 1.21643 0.93749 0.99654 0.99867 1.21520 0.91717 0.92372 0.96831 1.17906 0.82916 0.86968 0.77954 1.90764 1.68805 1.31087 1.50840 1.45983 1.05375 1.11696 1.71338 1.22429 0.94983 0.83847 1.01579 1.21103 0.85852 0.89278 1.02874 1.43228 1.59548 1.23546 1.00051 1.19072 1.40713 0.91585 0.87486 0.91441 1.25125 0.97698 0.96859 0.99195 1.70034 1.44324 1.08101 1.29989 0.86420 0.78176 0.78426 0.84536 1.21177 1.21415 1.20159 1.21234 0.91204 0.96222 0.90304 1.23043 1.06898 0.91274 1.02132 1.23359 0.99664 1.03474 0.99604 1.67873 1.39826 0.97352 1.10740 1.18870 0.89727 0.92104 0.98890 1.20940 1.00807 0.89925 0.98457 1.20933 0.94434 0.98110 0.99189 1.20980 0.94187 0.98506 0.99236 1.21004 1.00088 0.91124 0.99934 1.18834 0.93970 0.94314 1.02015 0.90056 0.90709 0.90359 0.83215 0.75581 0.91259 0.92814 0.94870 0.87558 0.93479 0.89465 0.88412 0.90696 0.91187 0.88973 0.84172 0.85104 0.85475 0.85052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.80 9.59 36.00 0.35 -0.45 16 2 C -0.03 -0.36 5.92 -104.30 -0.62 -0.98 16 3 C -0.13 -1.68 9.23 -39.44 -0.36 -2.05 16 4 C 0.13 2.01 6.75 -82.95 -0.56 1.45 16 5 C 0.56 10.19 7.81 -12.13 -0.09 10.10 16 6 O -0.54 -11.11 16.28 5.37 0.09 -11.03 16 7 N -0.69 -12.67 5.54 -61.11 -0.34 -13.01 16 8 C 0.10 1.99 6.00 -4.04 -0.02 1.97 16 9 C 0.14 3.06 5.45 -4.04 -0.02 3.04 16 10 N -0.55 -13.29 2.78 -165.67 -0.46 -13.75 16 11 C -0.26 -6.87 8.63 -15.06 -0.13 -7.00 16 12 H 0.07 1.80 6.55 -52.49 -0.34 1.46 16 13 C 0.01 0.31 4.96 -17.43 -0.09 0.23 16 14 N -0.88 -24.51 11.33 55.49 0.63 -23.88 16 15 Si 0.90 21.41 29.61 -169.99 -5.03 16.37 16 16 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 C 0.12 2.55 6.56 -67.93 -0.45 2.10 16 20 C -0.20 -3.87 9.80 -26.69 -0.26 -4.13 16 21 C -0.22 -4.48 10.36 -26.69 -0.28 -4.75 16 22 N -0.45 -6.68 9.47 -7.54 -0.07 -6.76 16 23 C 0.13 1.66 6.61 -84.85 -0.56 1.10 16 24 C -0.08 -0.88 9.99 -39.41 -0.39 -1.27 16 25 C -0.11 -0.86 9.94 -39.94 -0.40 -1.26 16 26 C -0.11 -0.81 9.95 -39.89 -0.40 -1.21 16 27 C -0.10 -0.85 9.31 -39.52 -0.37 -1.22 16 28 C -0.09 -1.00 5.75 -106.71 -0.61 -1.61 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.38 6.51 -51.93 -0.34 0.05 16 31 H 0.08 0.48 8.10 -51.93 -0.42 0.05 16 32 H 0.15 1.85 7.60 -52.49 -0.40 1.45 16 33 H 0.41 6.94 7.78 -40.82 -0.32 6.62 16 34 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 35 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.03 0.70 8.07 -51.93 -0.42 0.28 16 37 H 0.11 2.68 5.35 -51.93 -0.28 2.41 16 38 H 0.26 6.88 8.32 -40.82 -0.34 6.54 16 39 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 40 H 0.10 2.10 6.37 -51.93 -0.33 1.77 16 41 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 42 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 44 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 45 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 46 H 0.13 0.58 8.06 -52.48 -0.42 0.16 16 47 H 0.13 0.74 6.43 -52.48 -0.34 0.40 16 LS Contribution 391.17 15.07 5.89 5.89 Total: -1.00 -31.13 391.17 -11.11 -42.24 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -6.55 Total: 9.86 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -5.27 Total: -5.95 kcal Atomic # 7 Polarization: -57.15 SS G_CDS: -0.24 Total: -57.39 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.09 Total: -11.03 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.13 -11.11 -42.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714671268.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.319 kcal (2) G-P(sol) polarization free energy of solvation -31.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds