Wall clock time and date at job start Sat Apr 11 2020 05:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36544 * 120.87516 * 2 1 4 4 C 1.40242 * 119.81831 * 179.97438 * 3 2 1 5 5 C 1.48282 * 119.23723 * 179.72019 * 4 3 2 6 6 O 1.21492 * 120.00207 * 0.02562 * 5 4 3 7 7 N 1.34785 * 119.99897 * 179.97438 * 5 4 3 8 8 C 1.46496 * 119.99784 * 179.97438 * 7 5 4 9 9 C 1.53008 * 109.46695 * 180.02562 * 8 7 5 10 10 N 1.46496 * 109.46695 * 179.97438 * 9 8 7 11 11 C 1.36942 * 120.00195 * 269.99827 * 10 9 8 12 12 H 1.07999 * 119.99627 * 144.92768 * 11 10 9 13 13 C 1.38810 * 119.99908 * 324.93333 * 11 10 9 14 14 N 1.31622 * 119.99615 * 337.93261 * 13 11 10 15 15 Si 1.86801 * 119.99978 * 157.93527 * 13 11 10 16 16 H 1.48503 * 109.46798 * 89.99855 * 15 13 11 17 17 H 1.48500 * 109.46932 * 209.99323 * 15 13 11 18 18 H 1.48494 * 109.47166 * 329.99794 * 15 13 11 19 19 C 1.46500 * 120.00173 * 90.00069 * 10 9 8 20 20 C 1.52998 * 117.50092 * 183.23484 * 19 10 9 21 21 C 1.52998 * 117.49906 * 114.57073 * 19 10 9 22 22 N 1.31902 * 121.51960 * 359.97438 * 4 3 2 23 23 C 1.33240 * 121.29928 * 0.02562 * 22 4 3 24 24 C 1.40831 * 120.98066 * 179.97438 * 23 22 4 25 25 C 1.35991 * 119.72985 * 179.97438 * 24 23 22 26 26 C 1.39439 * 121.09024 * 0.02562 * 25 24 23 27 27 C 1.36124 * 120.92130 * 359.93215 * 26 25 24 28 28 C 1.40425 * 119.65075 * 0.08969 * 27 26 25 29 29 H 1.09000 * 109.47294 * 90.00084 * 1 2 3 30 30 H 1.09004 * 109.46555 * 210.00012 * 1 2 3 31 31 H 1.09001 * 109.47213 * 329.99721 * 1 2 3 32 32 H 1.07992 * 120.09053 * 359.96070 * 3 2 1 33 33 H 0.96999 * 119.99349 * 0.02562 * 7 5 4 34 34 H 1.08998 * 109.46901 * 299.99976 * 8 7 5 35 35 H 1.08996 * 109.46901 * 60.00558 * 8 7 5 36 36 H 1.08997 * 109.46794 * 300.00364 * 9 8 7 37 37 H 1.09001 * 109.47067 * 60.00089 * 9 8 7 38 38 H 0.97010 * 119.99472 * 176.07395 * 14 13 11 39 39 H 1.08996 * 115.54856 * 328.90972 * 19 10 9 40 40 H 1.09000 * 117.49937 * 0.02562 * 20 19 10 41 41 H 1.09001 * 117.49888 * 145.02492 * 20 19 10 42 42 H 1.09003 * 117.50285 * 214.98334 * 21 19 10 43 43 H 1.09001 * 117.49972 * 359.97438 * 21 19 10 44 44 H 1.07992 * 120.13535 * 359.97438 * 24 23 22 45 45 H 1.08001 * 119.45342 * 179.97438 * 25 24 23 46 46 H 1.08003 * 119.54260 * 179.97438 * 26 25 24 47 47 H 1.08006 * 120.17637 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2077 1.1719 0.0000 4 6 3.6098 1.1461 0.0005 5 6 4.3578 2.4264 -0.0058 6 8 3.7558 3.4817 -0.0109 7 7 5.7057 2.4195 -0.0048 8 6 6.4446 3.6844 -0.0116 9 6 7.9475 3.3970 -0.0096 10 7 8.6864 4.6619 -0.0170 11 6 9.0321 5.2460 -1.2064 12 1 9.0387 6.3221 -1.2977 13 6 9.3740 4.4549 -2.2946 14 7 9.7884 3.2200 -2.1061 15 14 9.2459 5.1431 -4.0265 16 1 10.5330 5.7816 -4.4019 17 1 8.9443 4.0417 -4.9758 18 1 8.1586 6.1532 -4.0787 19 6 9.0557 5.3020 1.2479 20 6 9.7597 6.6584 1.1742 21 6 10.5460 5.4084 1.5772 22 7 4.2786 0.0091 0.0016 23 6 3.6482 -1.1647 0.0016 24 6 4.3689 -2.3746 0.0022 25 6 3.6995 -3.5584 0.0027 26 6 2.3056 -3.5973 0.0022 27 6 1.5738 -2.4496 0.0026 28 6 2.2293 -1.2077 0.0015 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3632 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5139 32 1 1.6835 2.1161 -0.0006 33 1 6.1862 1.5769 -0.0004 34 1 6.1848 4.2521 -0.9051 35 1 6.1837 4.2623 0.8749 36 1 8.2075 2.8290 0.8836 37 1 8.2081 2.8191 -0.8963 38 1 9.9728 2.6487 -2.8681 39 1 8.3678 5.1364 2.0770 40 1 9.9477 7.0748 0.1846 41 1 9.5351 7.3850 1.9551 42 1 10.8385 5.3132 2.6229 43 1 11.2518 5.0017 0.8529 44 1 5.4487 -2.3624 0.0021 45 1 4.2566 -4.4835 0.0027 46 1 1.7995 -4.5515 0.0023 47 1 0.4946 -2.4938 0.0026 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714671268.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:45 Heat of formation + Delta-G solvation = 48.227444 kcal Electronic energy + Delta-G solvation = -28186.737112 eV Core-core repulsion = 24335.060640 eV Total energy + Delta-G solvation = -3851.676472 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.16562 -40.59382 -38.87376 -37.90833 -36.45277 -35.80888 -34.97459 -32.76466 -31.83048 -31.32595 -29.49372 -28.76650 -26.67636 -25.53957 -24.56508 -23.45242 -22.90891 -22.52528 -21.62056 -21.42341 -19.28757 -19.02690 -18.24866 -18.00862 -17.33563 -16.98376 -16.63777 -16.41912 -16.25201 -15.83855 -15.61174 -15.43514 -15.18442 -14.95318 -14.49776 -14.46404 -14.32051 -13.95327 -13.90951 -13.78563 -13.31524 -13.00415 -12.95691 -12.71685 -12.62793 -12.60827 -12.53488 -12.35199 -12.17005 -11.94720 -11.71759 -11.49062 -11.39923 -11.21691 -10.94405 -10.63003 -10.51578 -10.18943 -9.83123 -9.22307 -8.59976 -7.86200 -5.50064 -0.88226 -0.37569 0.89247 1.32612 1.40514 1.44729 1.53667 1.96666 2.19119 2.46913 2.92132 3.04567 3.12324 3.38402 3.46555 3.50790 3.63604 3.74042 3.83532 4.13721 4.20210 4.27975 4.30157 4.31918 4.35947 4.47293 4.49455 4.50186 4.57459 4.65858 4.74246 4.75321 4.93495 4.99206 5.01671 5.02021 5.10101 5.12857 5.16272 5.27241 5.38963 5.40130 5.44552 5.51463 5.53545 5.63445 5.72368 5.85961 6.32528 6.41139 6.67502 7.03179 7.09958 7.77937 8.27740 9.06126 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013578 B = 0.002523 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.731136 B =11093.497463 C =11369.768223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.020 4.020 3 C -0.150 4.150 4 C 0.103 3.897 5 C 0.560 3.440 6 O -0.569 6.569 7 N -0.693 5.693 8 C 0.119 3.881 9 C 0.144 3.856 10 N -0.564 5.564 11 C -0.263 4.263 12 H 0.062 0.938 13 C -0.033 4.033 14 N -0.908 5.908 15 Si 0.949 3.051 16 H -0.281 1.281 17 H -0.290 1.290 18 H -0.276 1.276 19 C 0.096 3.904 20 C -0.182 4.182 21 C -0.212 4.212 22 N -0.468 5.468 23 C 0.100 3.900 24 C -0.112 4.112 25 C -0.091 4.091 26 C -0.102 4.102 27 C -0.102 4.102 28 C -0.101 4.101 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.084 0.916 32 H 0.148 0.852 33 H 0.414 0.586 34 H 0.039 0.961 35 H 0.055 0.945 36 H 0.043 0.957 37 H 0.080 0.920 38 H 0.252 0.748 39 H 0.111 0.889 40 H 0.076 0.924 41 H 0.111 0.889 42 H 0.103 0.897 43 H 0.057 0.943 44 H 0.136 0.864 45 H 0.161 0.839 46 H 0.167 0.833 47 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.112 -16.396 6.714 26.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.028 4.028 3 C -0.171 4.171 4 C -0.049 4.049 5 C 0.345 3.655 6 O -0.449 6.449 7 N -0.343 5.343 8 C -0.007 4.007 9 C 0.018 3.982 10 N -0.282 5.282 11 C -0.393 4.393 12 H 0.079 0.921 13 C -0.231 4.231 14 N -0.552 5.552 15 Si 0.777 3.223 16 H -0.208 1.208 17 H -0.217 1.217 18 H -0.201 1.201 19 C -0.011 4.011 20 C -0.220 4.220 21 C -0.253 4.253 22 N -0.180 5.180 23 C -0.024 4.024 24 C -0.130 4.130 25 C -0.110 4.110 26 C -0.119 4.119 27 C -0.120 4.120 28 C -0.103 4.103 29 H 0.114 0.886 30 H 0.118 0.882 31 H 0.103 0.897 32 H 0.166 0.834 33 H 0.251 0.749 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.098 0.902 38 H 0.061 0.939 39 H 0.128 0.872 40 H 0.094 0.906 41 H 0.129 0.871 42 H 0.122 0.878 43 H 0.076 0.924 44 H 0.154 0.846 45 H 0.179 0.821 46 H 0.185 0.815 47 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -18.456 -15.787 6.582 25.163 hybrid contribution 0.135 0.410 -1.165 1.242 sum -18.321 -15.377 5.417 24.525 Atomic orbital electron populations 1.21009 0.86297 1.05300 1.04622 1.20569 0.98902 0.90539 0.92770 1.21661 0.92753 1.00811 1.01913 1.21112 0.92472 0.91253 1.00079 1.18369 0.82573 0.87966 0.76603 1.90719 1.69298 1.32606 1.52234 1.45863 1.05708 1.11005 1.71732 1.21951 0.94106 0.84549 1.00086 1.20922 0.86609 0.88727 1.01987 1.43412 1.60203 1.23921 1.00650 1.19215 1.39812 0.91484 0.88756 0.92054 1.25719 0.98151 0.97278 1.01931 1.70136 1.45669 1.08968 1.30387 0.85582 0.78016 0.77627 0.81089 1.20786 1.21650 1.20122 1.21543 0.92334 0.97427 0.89829 1.23061 1.05492 0.91293 1.02160 1.23265 0.97963 1.03481 1.00545 1.67738 1.40793 0.97977 1.11511 1.19318 0.91274 0.91907 0.99898 1.21089 1.01000 0.90292 1.00660 1.21374 0.95360 0.98100 0.96182 1.21494 0.93767 0.99946 0.96731 1.21412 1.01875 0.89898 0.98825 1.19162 0.93339 0.95938 1.01892 0.88559 0.88203 0.89717 0.83401 0.74939 0.94242 0.92678 0.93816 0.90194 0.93850 0.87178 0.90584 0.87066 0.87843 0.92418 0.84579 0.82111 0.81506 0.81674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.22 9.59 71.23 0.68 -0.54 16 2 C -0.02 -0.40 5.92 -19.65 -0.12 -0.52 16 3 C -0.15 -4.08 9.23 22.36 0.21 -3.87 16 4 C 0.10 3.41 6.75 42.29 0.29 3.69 16 5 C 0.56 21.80 7.81 86.91 0.68 22.48 16 6 O -0.57 -24.98 16.28 -3.69 -0.06 -25.04 16 7 N -0.69 -27.00 5.54 -465.55 -2.58 -29.58 16 8 C 0.12 5.17 6.00 86.38 0.52 5.69 16 9 C 0.14 6.77 5.45 86.38 0.47 7.24 16 10 N -0.56 -28.12 2.78 -678.04 -1.88 -30.01 16 11 C -0.26 -14.34 8.63 84.03 0.73 -13.62 16 12 H 0.06 3.37 6.55 -2.91 -0.02 3.35 16 13 C -0.03 -1.83 4.96 84.86 0.42 -1.41 16 14 N -0.91 -52.27 11.33 21.65 0.25 -52.02 16 15 Si 0.95 45.32 29.61 68.60 2.03 47.35 16 16 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 17 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 18 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 19 C 0.10 4.08 6.56 44.99 0.30 4.38 16 20 C -0.18 -7.01 9.80 30.62 0.30 -6.71 16 21 C -0.21 -8.45 10.36 30.62 0.32 -8.13 16 22 N -0.47 -14.81 9.47 -177.76 -1.68 -16.49 16 23 C 0.10 2.61 6.61 40.49 0.27 2.88 16 24 C -0.11 -2.30 9.99 22.38 0.22 -2.08 16 25 C -0.09 -1.17 9.94 22.04 0.22 -0.95 16 26 C -0.10 -1.01 9.95 22.07 0.22 -0.79 16 27 C -0.10 -1.27 9.31 22.31 0.21 -1.06 16 28 C -0.10 -2.10 5.75 -21.22 -0.12 -2.23 16 29 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.10 0.56 6.51 -2.38 -0.02 0.55 16 31 H 0.08 0.82 8.10 -2.39 -0.02 0.80 16 32 H 0.15 3.88 7.60 -2.91 -0.02 3.86 16 33 H 0.41 15.13 7.78 -92.71 -0.72 14.41 16 34 H 0.04 1.93 8.14 -2.39 -0.02 1.92 16 35 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.04 1.91 8.07 -2.39 -0.02 1.89 16 37 H 0.08 4.25 5.35 -2.39 -0.01 4.24 16 38 H 0.25 14.09 8.32 -92.70 -0.77 13.32 16 39 H 0.11 4.12 8.14 -2.39 -0.02 4.10 16 40 H 0.08 3.27 6.37 -2.39 -0.02 3.26 16 41 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 42 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 43 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 44 H 0.14 2.76 8.06 -2.91 -0.02 2.73 16 45 H 0.16 1.09 8.06 -2.91 -0.02 1.07 16 46 H 0.17 0.42 8.06 -2.91 -0.02 0.39 16 47 H 0.17 0.91 6.43 -2.91 -0.02 0.89 16 Total: -1.00 -72.00 391.17 2.15 -69.85 By element: Atomic # 1 Polarization: 31.22 SS G_CDS: 0.28 Total: 31.50 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: 5.80 Total: 4.44 kcal Atomic # 7 Polarization: -122.20 SS G_CDS: -5.90 Total: -128.10 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.06 Total: -25.04 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -72.00 2.15 -69.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714671268.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.075 kcal (2) G-P(sol) polarization free energy of solvation -71.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds