Wall clock time and date at job start Sat Apr 11 2020 05:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38603 * 120.32568 * 2 1 4 4 N 1.31498 * 120.89792 * 180.02562 * 3 2 1 5 5 C 1.32741 * 121.64586 * 359.97438 * 4 3 2 6 6 C 1.48168 * 119.72158 * 179.97438 * 5 4 3 7 7 O 1.21517 * 119.99775 * 174.48108 * 6 5 4 8 8 N 1.34776 * 120.00291 * 354.48547 * 6 5 4 9 9 C 1.46499 * 120.00292 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47245 * 179.97438 * 9 8 6 11 11 H 1.08998 * 109.46936 * 294.99948 * 10 9 8 12 12 N 1.46505 * 109.47040 * 54.99949 * 10 9 8 13 13 C 1.36938 * 119.99742 * 205.00415 * 12 10 9 14 14 H 1.08002 * 119.99937 * 359.97438 * 13 12 10 15 15 C 1.38811 * 119.99655 * 180.02562 * 13 12 10 16 16 N 1.31620 * 120.00311 * 0.26687 * 15 13 12 17 17 Si 1.86805 * 119.99699 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46692 * 59.99717 * 17 15 13 19 19 H 1.48502 * 109.46881 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47246 * 299.99803 * 17 15 13 21 21 C 1.50694 * 109.47094 * 174.99795 * 10 9 8 22 22 C 1.38232 * 120.00174 * 279.72808 * 21 10 9 23 23 C 1.38240 * 120.00142 * 179.78850 * 22 21 10 24 24 C 1.38236 * 119.99892 * 0.44045 * 23 22 21 25 25 C 1.38242 * 119.99773 * 359.81117 * 24 23 22 26 26 C 1.38237 * 120.00350 * 359.97438 * 25 24 23 27 27 C 1.39267 * 120.55598 * 0.24758 * 5 4 3 28 28 C 1.50702 * 120.47147 * 179.72444 * 27 5 4 29 29 C 1.38585 * 120.32128 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47016 * 90.00331 * 1 2 3 31 31 H 1.08999 * 109.47467 * 210.00527 * 1 2 3 32 32 H 1.09003 * 109.47000 * 330.00729 * 1 2 3 33 33 H 1.07996 * 119.54884 * 0.02562 * 3 2 1 34 34 H 0.97001 * 119.99365 * 0.02562 * 8 6 5 35 35 H 1.09004 * 109.46906 * 59.99507 * 9 8 6 36 36 H 1.09005 * 109.46867 * 300.00014 * 9 8 6 37 37 H 0.97002 * 119.99656 * 24.99854 * 12 10 9 38 38 H 0.97006 * 119.99729 * 359.73139 * 16 15 13 39 39 H 1.08002 * 120.00146 * 359.97438 * 22 21 10 40 40 H 1.07997 * 120.00091 * 180.26996 * 23 22 21 41 41 H 1.07991 * 120.00240 * 179.83098 * 24 23 22 42 42 H 1.08002 * 119.99716 * 180.02562 * 25 24 23 43 43 H 1.07990 * 120.00116 * 179.97438 * 26 25 24 44 44 H 1.08998 * 109.46747 * 83.28337 * 28 27 5 45 45 H 1.09003 * 109.47051 * 203.28930 * 28 27 5 46 46 H 1.08997 * 109.47103 * 323.28224 * 28 27 5 47 47 H 1.07998 * 120.75937 * 359.97041 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1964 0.0000 4 7 3.5218 1.2095 -0.0005 5 6 4.2295 0.0865 -0.0005 6 6 5.7097 0.1510 -0.0017 7 8 6.3624 -0.8690 0.0995 8 7 6.3323 1.3410 -0.1149 9 6 7.7959 1.4047 -0.1166 10 6 8.2428 2.8613 -0.2567 11 1 7.9364 3.2432 -1.2305 12 7 7.6243 3.6657 0.8000 13 6 7.4368 5.0097 0.6164 14 1 7.7453 5.4768 -0.3073 15 6 6.8513 5.7720 1.6179 16 7 6.4810 5.2040 2.7460 17 14 6.5962 7.6055 1.3676 18 1 5.7200 7.8270 0.1893 19 1 5.9564 8.1857 2.5757 20 1 7.9087 8.2612 1.1388 21 6 9.7428 2.9404 -0.1353 22 6 10.3373 2.9197 1.1124 23 6 11.7136 2.9879 1.2236 24 6 12.4947 3.0859 0.0873 25 6 11.8999 3.1118 -1.1603 26 6 10.5239 3.0392 -1.2717 27 6 3.5923 -1.1519 -0.0052 28 6 4.3977 -2.4257 -0.0115 29 6 2.2067 -1.1963 -0.0005 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3633 0.8901 0.5137 33 1 1.6648 2.1305 0.0004 34 1 5.8113 2.1552 -0.1952 35 1 8.1839 0.8238 -0.9533 36 1 8.1785 0.9952 0.8184 37 1 7.3475 3.2462 1.6297 38 1 6.6138 4.2519 2.8760 39 1 9.7268 2.8473 2.0004 40 1 12.1783 2.9673 2.1982 41 1 13.5697 3.1419 0.1742 42 1 12.5102 3.1880 -2.0481 43 1 10.0592 3.0599 -2.2462 44 1 4.6944 -2.6728 1.0078 45 1 3.7936 -3.2355 -0.4206 46 1 5.2875 -2.2899 -0.6262 47 1 1.6844 -2.1416 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714838587.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:42 Heat of formation + Delta-G solvation = 14.386113 kcal Electronic energy + Delta-G solvation = -28658.950174 eV Core-core repulsion = 24805.806232 eV Total energy + Delta-G solvation = -3853.143943 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.87884 -40.53562 -39.88779 -37.62868 -35.67524 -34.74806 -34.40896 -33.62902 -31.75641 -31.04415 -29.70744 -28.37863 -28.05037 -25.58908 -24.87742 -24.22272 -23.31157 -22.49410 -21.73423 -21.43888 -19.51332 -19.12538 -18.12759 -17.76213 -16.91113 -16.79342 -16.63349 -16.17254 -15.89444 -15.80299 -15.52539 -15.44893 -15.29954 -14.76484 -14.52048 -14.27904 -14.17633 -14.08657 -14.01406 -13.74638 -13.48943 -13.40639 -13.31077 -13.20403 -12.75775 -12.71418 -12.70581 -12.53018 -12.06627 -11.91601 -11.77201 -11.29198 -11.13274 -10.98393 -10.62452 -10.43659 -10.25306 -9.80378 -9.74532 -9.60007 -9.14051 -8.34493 -5.30447 -0.41177 0.19830 0.51436 0.57529 1.58048 1.62817 1.67412 1.83210 2.06899 2.70648 2.75865 2.94241 3.13786 3.43994 3.60689 3.67372 3.73216 3.87436 3.90475 3.92934 4.05584 4.13261 4.20256 4.23453 4.27575 4.33780 4.46729 4.55334 4.61103 4.69789 4.74105 4.75730 4.84190 4.84583 4.92240 5.05095 5.14678 5.16169 5.21371 5.22580 5.26541 5.42743 5.61126 5.62770 5.66034 5.67419 5.86538 6.19554 6.35617 6.51170 6.77630 7.05594 7.08088 7.96005 8.08228 9.15789 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009266 B = 0.003566 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3021.237697 B = 7851.095136 C =10315.164464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.098 4.098 3 C 0.073 3.927 4 N -0.477 5.477 5 C 0.031 3.969 6 C 0.561 3.439 7 O -0.558 6.558 8 N -0.698 5.698 9 C 0.130 3.870 10 C 0.210 3.790 11 H 0.064 0.936 12 N -0.729 5.729 13 C -0.320 4.320 14 H 0.064 0.936 15 C -0.095 4.095 16 N -0.972 5.972 17 Si 1.122 2.878 18 H -0.276 1.276 19 H -0.296 1.296 20 H -0.284 1.284 21 C -0.101 4.101 22 C -0.112 4.112 23 C -0.135 4.135 24 C -0.128 4.128 25 C -0.123 4.123 26 C -0.127 4.127 27 C -0.076 4.076 28 C -0.110 4.110 29 C -0.089 4.089 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.176 0.824 34 H 0.413 0.587 35 H 0.084 0.916 36 H 0.052 0.948 37 H 0.359 0.641 38 H 0.241 0.759 39 H 0.091 0.909 40 H 0.130 0.870 41 H 0.148 0.852 42 H 0.150 0.850 43 H 0.132 0.868 44 H 0.071 0.929 45 H 0.091 0.909 46 H 0.076 0.924 47 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.491 -13.092 -9.444 17.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.100 4.100 3 C -0.088 4.088 4 N -0.187 5.187 5 C -0.105 4.105 6 C 0.348 3.652 7 O -0.438 6.438 8 N -0.348 5.348 9 C 0.006 3.994 10 C 0.100 3.900 11 H 0.082 0.918 12 N -0.370 5.370 13 C -0.451 4.451 14 H 0.082 0.918 15 C -0.287 4.287 16 N -0.620 5.620 17 Si 0.948 3.052 18 H -0.202 1.202 19 H -0.222 1.222 20 H -0.210 1.210 21 C -0.104 4.104 22 C -0.131 4.131 23 C -0.153 4.153 24 C -0.146 4.146 25 C -0.141 4.141 26 C -0.145 4.145 27 C -0.079 4.079 28 C -0.166 4.166 29 C -0.114 4.114 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.100 0.900 33 H 0.193 0.807 34 H 0.250 0.750 35 H 0.102 0.898 36 H 0.071 0.929 37 H 0.192 0.808 38 H 0.052 0.948 39 H 0.109 0.891 40 H 0.148 0.852 41 H 0.166 0.834 42 H 0.168 0.832 43 H 0.150 0.850 44 H 0.089 0.911 45 H 0.110 0.890 46 H 0.095 0.905 47 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -5.035 -11.487 -8.896 15.376 hybrid contribution 0.047 -1.519 0.087 1.523 sum -4.988 -13.006 -8.808 16.481 Atomic orbital electron populations 1.20884 0.86701 1.04814 1.04225 1.21591 0.99844 0.93006 0.95553 1.23177 0.88561 0.99726 0.97313 1.67495 1.10510 1.30685 1.10048 1.20876 0.93290 0.90522 1.05836 1.18282 0.87028 0.83387 0.76522 1.90671 1.66966 1.34136 1.52065 1.45898 1.07683 1.09482 1.71759 1.21523 0.79511 0.96548 1.01832 1.19449 0.88447 0.89160 0.92926 0.91800 1.42463 1.72432 1.05697 1.16444 1.20206 1.36344 0.86015 1.02513 0.91768 1.26951 0.99156 1.09358 0.93226 1.70996 1.52523 1.11584 1.26886 0.82688 0.76490 0.70656 0.75352 1.20226 1.22187 1.21035 1.20793 0.96753 0.99031 0.93852 1.20897 0.95233 0.99958 0.96967 1.21349 0.93214 1.00830 0.99882 1.21418 1.00814 1.00208 0.92147 1.21433 0.94353 0.99734 0.98549 1.21266 0.94578 1.00774 0.97927 1.21171 0.95755 0.95542 0.95439 1.20977 0.99894 0.92449 1.03307 1.21831 0.91720 1.00202 0.97652 0.88845 0.89210 0.90018 0.80679 0.74974 0.89793 0.92917 0.80835 0.94833 0.89118 0.85249 0.83427 0.83233 0.84970 0.91080 0.88988 0.90548 0.80457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 10.03 71.24 0.71 -0.38 16 2 C -0.10 -1.85 5.91 -19.69 -0.12 -1.96 16 3 C 0.07 1.88 10.86 84.83 0.92 2.80 16 4 N -0.48 -16.18 9.56 -184.91 -1.77 -17.95 16 5 C 0.03 1.05 6.75 41.89 0.28 1.34 16 6 C 0.56 21.24 7.75 86.88 0.67 21.91 16 7 O -0.56 -21.98 13.31 -3.77 -0.05 -22.03 16 8 N -0.70 -26.97 5.38 -465.65 -2.50 -29.47 16 9 C 0.13 4.87 5.21 86.38 0.45 5.32 16 10 C 0.21 8.44 2.65 44.24 0.12 8.56 16 11 H 0.06 2.58 7.94 -2.39 -0.02 2.56 16 12 N -0.73 -35.91 3.79 -326.49 -1.24 -37.15 16 13 C -0.32 -17.57 9.92 84.03 0.83 -16.74 16 14 H 0.06 3.49 7.83 -2.91 -0.02 3.47 16 15 C -0.10 -5.48 5.50 84.86 0.47 -5.01 16 16 N -0.97 -60.86 13.70 21.65 0.30 -60.56 16 17 Si 1.12 52.39 29.92 68.60 2.05 54.44 16 18 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 19 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 21 C -0.10 -3.82 4.92 -19.87 -0.10 -3.92 16 22 C -0.11 -4.38 9.33 22.27 0.21 -4.17 16 23 C -0.13 -4.37 10.05 22.27 0.22 -4.14 16 24 C -0.13 -3.47 10.05 22.27 0.22 -3.25 16 25 C -0.12 -3.30 10.05 22.27 0.22 -3.07 16 26 C -0.13 -4.01 9.67 22.27 0.22 -3.79 16 27 C -0.08 -2.01 5.93 -19.52 -0.12 -2.13 16 28 C -0.11 -2.60 8.74 71.24 0.62 -1.97 16 29 C -0.09 -1.70 9.51 22.45 0.21 -1.48 16 30 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.09 0.61 8.09 -2.39 -0.02 0.60 16 32 H 0.08 0.75 8.09 -2.39 -0.02 0.74 16 33 H 0.18 3.71 8.06 -2.91 -0.02 3.69 16 34 H 0.41 17.19 7.48 -92.71 -0.69 16.50 16 35 H 0.08 2.86 8.14 -2.38 -0.02 2.84 16 36 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 37 H 0.36 19.12 6.63 -92.71 -0.61 18.51 16 38 H 0.24 15.26 6.78 -92.70 -0.63 14.63 16 39 H 0.09 3.97 7.71 -2.91 -0.02 3.94 16 40 H 0.13 3.65 8.06 -2.91 -0.02 3.63 16 41 H 0.15 2.96 8.06 -2.92 -0.02 2.93 16 42 H 0.15 2.93 8.06 -2.91 -0.02 2.90 16 43 H 0.13 3.62 8.04 -2.92 -0.02 3.59 16 44 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.09 1.48 8.05 -2.39 -0.02 1.46 16 46 H 0.08 2.19 5.85 -2.39 -0.01 2.18 16 47 H 0.18 1.94 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -73.46 395.13 2.68 -70.78 By element: Atomic # 1 Polarization: 54.21 SS G_CDS: -0.17 Total: 54.04 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: 6.06 Total: -12.10 kcal Atomic # 7 Polarization: -139.92 SS G_CDS: -5.21 Total: -145.13 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -0.05 Total: -22.03 kcal Atomic # 14 Polarization: 52.39 SS G_CDS: 2.05 Total: 54.44 kcal Total: -73.46 2.68 -70.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714838587.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.168 kcal (2) G-P(sol) polarization free energy of solvation -73.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds