Wall clock time and date at job start Sat Apr 11 2020 05:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38172 * 120.49609 * 2 1 4 4 N 1.31799 * 120.89270 * 180.02562 * 3 2 1 5 5 C 1.31831 * 122.04657 * 359.97438 * 4 3 2 6 6 C 1.38125 * 120.90120 * 0.02562 * 5 4 3 7 7 C 1.39794 * 120.50174 * 180.02562 * 2 1 3 8 8 C 1.48151 * 120.92200 * 0.02562 * 7 2 1 9 9 O 1.21520 * 120.00018 * 353.89927 * 8 7 2 10 10 N 1.34773 * 120.00194 * 173.90280 * 8 7 2 11 11 C 1.46503 * 120.00087 * 180.02562 * 10 8 7 12 12 C 1.50705 * 109.47045 * 179.97438 * 11 10 8 13 13 C 1.38236 * 119.99883 * 269.72393 * 12 11 10 14 14 C 1.38234 * 119.99483 * 179.80809 * 13 12 11 15 15 C 1.38236 * 120.00453 * 0.42316 * 14 13 12 16 16 C 1.50692 * 119.99842 * 179.78673 * 15 14 13 17 17 H 1.09005 * 109.47185 * 160.01840 * 16 15 14 18 18 C 1.53000 * 109.47594 * 280.01761 * 16 15 14 19 19 N 1.46497 * 109.47319 * 40.02291 * 16 15 14 20 20 C 1.36937 * 120.00055 * 154.99526 * 19 16 15 21 21 H 1.08007 * 120.00358 * 0.02562 * 20 19 16 22 22 C 1.38813 * 120.00338 * 179.97438 * 20 19 16 23 23 N 1.31615 * 120.00753 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 119.99654 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47277 * 89.99900 * 24 22 20 26 26 H 1.48507 * 109.47122 * 210.00188 * 24 22 20 27 27 H 1.48503 * 109.47117 * 329.99641 * 24 22 20 28 28 C 1.38232 * 119.99581 * 359.80986 * 15 14 13 29 29 C 1.38231 * 120.00501 * 359.97438 * 28 15 14 30 30 H 1.09001 * 109.46982 * 263.64564 * 1 2 3 31 31 H 1.08993 * 109.47215 * 23.64814 * 1 2 3 32 32 H 1.08997 * 109.46828 * 143.64974 * 1 2 3 33 33 H 1.07996 * 119.55522 * 0.03793 * 3 2 1 34 34 H 1.08003 * 119.55145 * 179.97438 * 5 4 3 35 35 H 1.08003 * 120.49908 * 179.97438 * 6 5 4 36 36 H 0.96998 * 119.99972 * 359.97438 * 10 8 7 37 37 H 1.08998 * 109.46506 * 299.99636 * 11 10 8 38 38 H 1.08995 * 109.47436 * 59.99740 * 11 10 8 39 39 H 1.07993 * 120.00005 * 0.02562 * 13 12 11 40 40 H 1.08006 * 119.99501 * 180.20702 * 14 13 12 41 41 H 1.09001 * 109.47111 * 300.00730 * 18 16 15 42 42 H 1.09000 * 109.46369 * 60.00026 * 18 16 15 43 43 H 1.08995 * 109.47146 * 179.97438 * 18 16 15 44 44 H 0.96998 * 120.00115 * 334.99518 * 19 16 15 45 45 H 0.96989 * 120.00419 * 179.97438 * 23 22 20 46 46 H 1.08007 * 120.00024 * 179.97438 * 28 15 14 47 47 H 1.08004 * 120.00392 * 179.97438 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2082 1.1906 0.0000 4 7 3.5262 1.1997 -0.0005 5 6 4.2334 0.0871 -0.0005 6 6 3.6137 -1.1473 -0.0006 7 6 2.2166 -1.2045 -0.0005 8 6 1.5079 -2.5055 -0.0017 9 8 0.2983 -2.5387 0.1097 10 7 2.2048 -3.6524 -0.1262 11 6 1.5040 -4.9389 -0.1279 12 6 2.5044 -6.0557 -0.2797 13 6 2.8477 -6.5096 -1.5394 14 6 3.7683 -7.5313 -1.6787 15 6 4.3391 -8.1051 -0.5580 16 6 5.3391 -9.2221 -0.7099 17 1 5.9313 -9.3060 0.2014 18 6 4.5998 -10.5380 -0.9605 19 7 6.2233 -8.9355 -1.8422 20 6 7.4788 -9.4805 -1.8856 21 1 7.8170 -10.1221 -1.0852 22 6 8.3165 -9.2093 -2.9587 23 7 9.5231 -9.7336 -3.0007 24 14 7.7314 -8.1002 -4.3432 25 1 8.0843 -6.6917 -4.0320 26 1 8.3866 -8.5058 -5.6128 27 1 6.2582 -8.2216 -4.4858 28 6 3.9921 -7.6544 0.7018 29 6 3.0749 -6.6297 0.8411 30 1 -0.3633 -0.1137 1.0214 31 1 -0.3633 0.9413 -0.4122 32 1 -0.3633 -0.8277 -0.6091 33 1 1.6691 2.1263 0.0006 34 1 5.3121 0.1416 -0.0014 35 1 4.1995 -2.0547 -0.0010 36 1 3.1703 -3.6259 -0.2154 37 1 0.9639 -5.0595 0.8112 38 1 0.7991 -4.9676 -0.9587 39 1 2.3993 -6.0636 -2.4148 40 1 4.0391 -7.8837 -2.6631 41 1 3.9418 -10.7513 -0.1181 42 1 4.0076 -10.4541 -1.8718 43 1 5.3231 -11.3459 -1.0708 44 1 5.9195 -8.3596 -2.5611 45 1 10.1082 -9.5444 -3.7507 46 1 4.4377 -8.1029 1.5775 47 1 2.8035 -6.2779 1.8255 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724747921.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:06 Heat of formation + Delta-G solvation = 37.282464 kcal Electronic energy + Delta-G solvation = -27730.513334 eV Core-core repulsion = 23878.362251 eV Total energy + Delta-G solvation = -3852.151082 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.14195 -39.80877 -39.11363 -36.29050 -34.93752 -33.77567 -32.85491 -32.16995 -30.95763 -30.54918 -28.95180 -27.81876 -26.33480 -24.75963 -23.73261 -22.87426 -22.55401 -21.62307 -21.14893 -19.89073 -18.61058 -18.01892 -17.22020 -16.15191 -16.03250 -15.88362 -15.67770 -15.37361 -15.29790 -14.85393 -14.52491 -14.21708 -13.97572 -13.81326 -13.78698 -13.41535 -13.32793 -13.03807 -12.89977 -12.79256 -12.62950 -12.42512 -12.29572 -11.97455 -11.83641 -11.46457 -11.15567 -10.96915 -10.74293 -10.61109 -10.41903 -10.26869 -10.13207 -9.74410 -9.65459 -9.49103 -9.31215 -9.06864 -8.86571 -8.54316 -7.37078 -5.84122 -3.20259 0.29904 0.64348 1.23790 1.46318 2.51194 2.80406 3.29967 3.32808 3.39319 3.40933 3.83997 3.99177 4.17461 4.29480 4.39007 4.51332 4.51917 4.55996 4.77994 4.95185 5.00386 5.06723 5.16935 5.19089 5.25848 5.35415 5.38060 5.41107 5.42447 5.48565 5.54811 5.65823 5.72710 5.84660 5.90495 6.03989 6.07156 6.12025 6.15170 6.19769 6.28381 6.43994 6.52047 6.54944 6.79994 6.94699 7.04559 7.08696 7.48325 7.75613 7.90940 8.34463 9.11875 9.84198 10.03343 11.33998 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012756 B = 0.002421 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.486423 B =11564.975385 C =13006.130122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.078 4.078 3 C 0.092 3.908 4 N -0.465 5.465 5 C 0.088 3.912 6 C -0.135 4.135 7 C -0.095 4.095 8 C 0.557 3.443 9 O -0.526 6.526 10 N -0.716 5.716 11 C 0.167 3.833 12 C -0.132 4.132 13 C -0.098 4.098 14 C -0.114 4.114 15 C -0.054 4.054 16 C 0.209 3.791 17 H 0.066 0.934 18 C -0.160 4.160 19 N -0.745 5.745 20 C -0.245 4.245 21 H 0.092 0.908 22 C 0.007 3.993 23 N -0.932 5.932 24 Si 0.882 3.118 25 H -0.283 1.283 26 H -0.290 1.290 27 H -0.278 1.278 28 C -0.118 4.118 29 C -0.099 4.099 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.095 0.905 33 H 0.162 0.838 34 H 0.164 0.836 35 H 0.141 0.859 36 H 0.404 0.596 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.119 0.881 40 H 0.124 0.876 41 H 0.041 0.959 42 H 0.047 0.953 43 H 0.063 0.937 44 H 0.361 0.639 45 H 0.260 0.740 46 H 0.125 0.875 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.148 16.999 7.906 26.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.080 4.080 3 C -0.065 4.065 4 N -0.174 5.174 5 C -0.068 4.068 6 C -0.156 4.156 7 C -0.106 4.106 8 C 0.344 3.656 9 O -0.404 6.404 10 N -0.368 5.368 11 C 0.045 3.955 12 C -0.133 4.133 13 C -0.117 4.117 14 C -0.133 4.133 15 C -0.055 4.055 16 C 0.100 3.900 17 H 0.084 0.916 18 C -0.220 4.220 19 N -0.389 5.389 20 C -0.374 4.374 21 H 0.110 0.890 22 C -0.189 4.189 23 N -0.579 5.579 24 Si 0.712 3.288 25 H -0.210 1.210 26 H -0.216 1.216 27 H -0.204 1.204 28 C -0.136 4.136 29 C -0.117 4.117 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.114 0.886 33 H 0.179 0.821 34 H 0.181 0.819 35 H 0.158 0.842 36 H 0.239 0.761 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.137 0.863 40 H 0.141 0.859 41 H 0.061 0.939 42 H 0.066 0.934 43 H 0.082 0.918 44 H 0.195 0.805 45 H 0.070 0.930 46 H 0.143 0.857 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -18.345 17.603 8.026 26.661 hybrid contribution -0.032 -0.148 -1.190 1.200 sum -18.377 17.455 6.836 26.251 Atomic orbital electron populations 1.20987 0.88972 1.03501 1.03883 1.21135 0.98460 0.92434 0.96012 1.22776 0.89785 0.97419 0.96567 1.67566 1.08310 1.31857 1.09643 1.22773 1.00771 0.87137 0.96142 1.22403 0.93854 1.00452 0.98861 1.20229 0.93789 0.93805 1.02819 1.18173 0.86947 0.83543 0.76933 1.90743 1.13393 1.87058 1.49191 1.46083 1.11349 1.05528 1.73850 1.20192 0.92914 0.79407 1.02972 1.19646 1.00640 0.99114 0.93867 1.21013 0.97460 0.96789 0.96395 1.21054 0.96527 0.96515 0.99167 1.20564 0.95632 0.96410 0.92865 1.19229 0.88598 0.89596 0.92605 0.91636 1.22392 1.00085 0.99455 1.00086 1.42862 1.14580 1.59293 1.22171 1.19059 0.88343 1.23947 1.06091 0.89039 1.24654 0.95932 1.00110 0.98245 1.69685 1.07682 1.48170 1.32361 0.86601 0.77908 0.81251 0.83029 1.21005 1.21615 1.20442 1.21051 0.98195 0.97231 0.97136 1.20974 0.96645 0.96365 0.97732 0.90314 0.91780 0.88641 0.82077 0.81928 0.84160 0.76062 0.90450 0.90504 0.86268 0.85852 0.93949 0.93429 0.91841 0.80461 0.92965 0.85732 0.86223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.93 8.84 36.01 0.32 -0.61 16 2 C -0.08 -0.70 5.93 -104.06 -0.62 -1.31 16 3 C 0.09 0.78 10.83 -17.59 -0.19 0.59 16 4 N -0.47 -4.50 10.34 -13.30 -0.14 -4.64 16 5 C 0.09 0.73 11.17 -17.59 -0.20 0.53 16 6 C -0.14 -1.08 9.60 -39.03 -0.37 -1.45 16 7 C -0.10 -0.90 5.91 -104.65 -0.62 -1.52 16 8 C 0.56 5.85 7.74 -12.19 -0.09 5.75 16 9 O -0.53 -6.72 13.53 5.35 0.07 -6.65 16 10 N -0.72 -6.52 5.51 -62.33 -0.34 -6.86 16 11 C 0.17 1.59 5.80 -5.19 -0.03 1.56 16 12 C -0.13 -1.42 5.25 -104.62 -0.55 -1.96 16 13 C -0.10 -1.18 9.70 -39.58 -0.38 -1.57 16 14 C -0.11 -1.67 9.05 -39.58 -0.36 -2.03 16 15 C -0.05 -0.82 4.95 -104.63 -0.52 -1.34 16 16 C 0.21 3.80 3.09 -69.09 -0.21 3.59 16 17 H 0.07 1.22 7.94 -51.93 -0.41 0.80 16 18 C -0.16 -2.68 9.47 37.16 0.35 -2.33 16 19 N -0.75 -16.82 4.87 -54.55 -0.27 -17.08 16 20 C -0.24 -6.64 10.41 -15.06 -0.16 -6.80 16 21 H 0.09 2.65 8.06 -52.48 -0.42 2.23 16 22 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 23 N -0.93 -28.60 13.97 55.49 0.78 -27.82 16 24 Si 0.88 21.51 27.74 -169.99 -4.71 16.80 16 25 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 27 H -0.28 -6.32 6.52 56.52 0.37 -5.96 16 28 C -0.12 -1.51 9.67 -39.59 -0.38 -1.89 16 29 C -0.10 -1.08 9.70 -39.58 -0.38 -1.46 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.37 8.05 -51.93 -0.42 -0.05 16 32 H 0.10 0.94 5.95 -51.93 -0.31 0.63 16 33 H 0.16 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.16 0.95 8.06 -52.48 -0.42 0.53 16 35 H 0.14 0.82 6.58 -52.48 -0.35 0.48 16 36 H 0.40 3.17 6.64 -40.82 -0.27 2.90 16 37 H 0.08 0.72 8.09 -51.93 -0.42 0.30 16 38 H 0.08 0.74 8.08 -51.93 -0.42 0.32 16 39 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 40 H 0.12 1.92 6.92 -52.48 -0.36 1.56 16 41 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 44 H 0.36 8.01 3.93 -40.82 -0.16 7.85 16 45 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 46 H 0.12 1.42 8.04 -52.48 -0.42 1.00 16 47 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 LS Contribution 390.71 15.07 5.89 5.89 Total: -1.00 -32.74 390.71 -9.74 -42.48 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -6.51 Total: 10.06 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: -4.49 Total: -12.17 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: 0.03 Total: -56.40 kcal Atomic # 8 Polarization: -6.72 SS G_CDS: 0.07 Total: -6.65 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.71 Total: 16.80 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.74 -9.74 -42.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724747921.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.763 kcal (2) G-P(sol) polarization free energy of solvation -32.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds