Wall clock time and date at job start Sat Apr 11 2020 05:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46495 * 109.46443 * 2 1 4 4 C 1.36936 * 119.99783 * 60.03181 * 3 2 1 5 5 H 1.08000 * 119.99945 * 359.97438 * 4 3 2 6 6 C 1.38808 * 119.99726 * 179.97438 * 4 3 2 7 7 N 1.31626 * 120.00022 * 179.97438 * 6 4 3 8 8 Si 1.86806 * 120.00336 * 359.97438 * 6 4 3 9 9 H 1.48489 * 109.47070 * 90.00165 * 8 6 4 10 10 H 1.48497 * 109.46836 * 210.00270 * 8 6 4 11 11 H 1.48496 * 109.46705 * 329.99890 * 8 6 4 12 12 C 1.53041 * 109.45411 * 240.02689 * 2 1 3 13 13 C 1.53201 * 109.31065 * 178.61925 * 12 2 1 14 14 N 1.46919 * 108.77450 * 54.63300 * 13 12 2 15 15 C 1.34779 * 120.62584 * 126.37197 * 14 13 12 16 16 O 1.21605 * 120.00469 * 4.20751 * 15 14 13 17 17 C 1.47457 * 120.00048 * 184.20837 * 15 14 13 18 18 C 1.38859 * 120.46066 * 305.41877 * 17 15 14 19 19 C 1.38896 * 120.68033 * 180.29592 * 18 17 15 20 20 C 1.36374 * 121.26508 * 359.44316 * 19 18 17 21 21 C 1.40391 * 119.99201 * 0.27238 * 20 19 18 22 22 C 1.40467 * 121.96041 * 179.97438 * 21 20 19 23 23 N 1.31271 * 119.88782 * 180.02562 * 22 21 20 24 24 C 1.32553 * 122.73374 * 0.04565 * 23 22 21 25 25 C 1.36336 * 121.81789 * 359.95000 * 24 23 22 26 26 C 1.40286 * 118.70120 * 0.02942 * 25 24 23 27 27 C 1.46925 * 118.74218 * 306.64510 * 14 13 12 28 28 C 1.52756 * 109.00702 * 53.30846 * 27 14 13 29 29 H 1.09000 * 109.47733 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46509 * 299.97513 * 1 2 3 31 31 H 1.08999 * 109.47079 * 59.96795 * 1 2 3 32 32 H 0.97000 * 120.00130 * 240.02881 * 3 2 1 33 33 H 0.96998 * 120.00052 * 179.97438 * 7 6 4 34 34 H 1.08995 * 109.49885 * 58.66939 * 12 2 1 35 35 H 1.09002 * 109.52849 * 298.58373 * 12 2 1 36 36 H 1.08998 * 109.58123 * 294.84644 * 13 12 2 37 37 H 1.08998 * 109.58672 * 174.42552 * 13 12 2 38 38 H 1.08007 * 119.66095 * 0.02562 * 18 17 15 39 39 H 1.07997 * 119.36838 * 179.71349 * 19 18 17 40 40 H 1.08010 * 120.00747 * 180.25636 * 20 19 18 41 41 H 1.08007 * 120.05424 * 0.04337 * 22 21 20 42 42 H 1.07996 * 119.09083 * 179.97438 * 24 23 22 43 43 H 1.07999 * 120.64572 * 180.02562 * 25 24 23 44 44 H 1.09000 * 109.58615 * 173.14370 * 27 14 13 45 45 H 1.08996 * 109.58360 * 293.56613 * 27 14 13 46 46 H 1.09000 * 109.56515 * 185.55285 * 28 27 14 47 47 H 1.09009 * 109.38472 * 65.51791 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3812 0.0000 4 6 1.6877 2.2241 1.0274 5 1 1.0670 1.8708 1.8374 6 6 2.1507 3.5327 1.0276 7 7 1.8328 4.3431 2.0149 8 14 3.2251 4.1438 -0.3731 9 1 2.3669 4.7102 -1.4443 10 1 4.1456 5.1943 0.1311 11 1 4.0168 3.0124 -0.9193 12 6 2.0397 -0.7209 -1.2500 13 6 3.5713 -0.6889 -1.2642 14 7 4.0677 -1.2490 0.0000 15 6 4.9612 -2.2581 0.0000 16 8 5.4220 -2.6623 -1.0502 17 6 5.3801 -2.8720 1.2736 18 6 5.8911 -2.0872 2.2989 19 6 6.2927 -2.6614 3.4981 20 6 6.1881 -4.0045 3.7098 21 6 5.6716 -4.8355 2.7030 22 6 5.5460 -6.2238 2.8764 23 7 5.0580 -6.9625 1.9073 24 6 4.6690 -6.4557 0.7459 25 6 4.7507 -5.1209 0.4807 26 6 5.2623 -4.2676 1.4698 27 6 3.5671 -0.6924 1.2642 28 6 2.0398 -0.7207 1.2501 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3632 0.5135 0.8903 31 1 -0.3633 0.5143 -0.8897 32 1 2.5754 1.6987 -0.7277 33 1 2.1566 5.2575 2.0152 34 1 1.6571 -0.2210 -2.1398 35 1 1.6976 -1.7558 -1.2388 36 1 3.9142 0.3406 -1.3675 37 1 3.9415 -1.2849 -2.0984 38 1 5.9813 -1.0198 2.1608 39 1 6.6915 -2.0316 4.2796 40 1 6.5028 -4.4290 4.6518 41 1 5.8502 -6.6825 3.8057 42 1 4.2763 -7.1183 -0.0110 43 1 4.4279 -4.7281 -0.4721 44 1 3.9346 -1.2908 2.0979 45 1 3.9098 0.3367 1.3714 46 1 1.6572 -0.2206 2.1398 47 1 1.6972 -1.7555 1.2387 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724961026.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:17 Heat of formation + Delta-G solvation = 23.334158 kcal Electronic energy + Delta-G solvation = -30096.483278 eV Core-core repulsion = 26243.727352 eV Total energy + Delta-G solvation = -3852.755926 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.24050 -41.06752 -39.38250 -38.17915 -36.17021 -34.34123 -33.99157 -32.62613 -31.93619 -31.60765 -30.76789 -29.16500 -25.96295 -25.47550 -24.91419 -24.63747 -24.18091 -23.25102 -21.10260 -19.79281 -19.70210 -19.18424 -18.40198 -17.78699 -17.62876 -16.87601 -16.46090 -16.35803 -15.90696 -15.81777 -15.37949 -15.23961 -15.18871 -15.00590 -14.79261 -14.64172 -14.39862 -14.31119 -13.71090 -13.63115 -13.60341 -13.03179 -12.97436 -12.93739 -12.75509 -12.71183 -12.57606 -12.49458 -12.21582 -12.08323 -11.78208 -11.65260 -11.28319 -11.18231 -11.01697 -10.87557 -10.52417 -10.10473 -9.77983 -9.22946 -9.09284 -7.94200 -5.25498 -0.82938 -0.16767 0.65930 1.38602 1.40131 1.46856 1.48834 1.84443 2.07526 2.52130 3.02196 3.24809 3.37905 3.47525 3.52565 3.61341 3.75249 3.80877 3.86406 3.88619 3.93421 4.07513 4.15126 4.20651 4.31943 4.37018 4.46356 4.56191 4.58468 4.70760 4.72304 4.73053 4.81449 4.89926 4.94093 4.98513 5.02202 5.05122 5.11021 5.22722 5.24522 5.27360 5.32646 5.52288 5.57712 5.59932 5.75398 5.89167 6.28056 6.30481 6.93491 6.95071 7.15987 7.92362 8.10673 9.27263 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015931 B = 0.003470 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.104165 B = 8066.543806 C = 8548.748729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.195 3.805 3 N -0.742 5.742 4 C -0.199 4.199 5 H 0.067 0.933 6 C -0.060 4.060 7 N -0.984 5.984 8 Si 0.937 3.063 9 H -0.287 1.287 10 H -0.304 1.304 11 H -0.256 1.256 12 C -0.123 4.123 13 C 0.113 3.887 14 N -0.591 5.591 15 C 0.561 3.439 16 O -0.575 6.575 17 C -0.148 4.148 18 C -0.056 4.056 19 C -0.129 4.129 20 C -0.045 4.045 21 C -0.132 4.132 22 C 0.158 3.842 23 N -0.512 5.512 24 C 0.079 3.921 25 C -0.171 4.171 26 C -0.005 4.005 27 C 0.115 3.885 28 C -0.128 4.128 29 H 0.067 0.933 30 H 0.036 0.964 31 H 0.048 0.952 32 H 0.362 0.638 33 H 0.253 0.747 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.059 0.941 37 H 0.090 0.910 38 H 0.136 0.864 39 H 0.167 0.833 40 H 0.183 0.817 41 H 0.206 0.794 42 H 0.170 0.830 43 H 0.125 0.875 44 H 0.096 0.904 45 H 0.065 0.935 46 H 0.063 0.937 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.730 -20.440 2.549 22.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.105 3.895 3 N -0.386 5.386 4 C -0.330 4.330 5 H 0.085 0.915 6 C -0.251 4.251 7 N -0.636 5.636 8 Si 0.767 3.233 9 H -0.213 1.213 10 H -0.232 1.232 11 H -0.181 1.181 12 C -0.161 4.161 13 C -0.009 4.009 14 N -0.322 5.322 15 C 0.350 3.650 16 O -0.456 6.456 17 C -0.151 4.151 18 C -0.076 4.076 19 C -0.146 4.146 20 C -0.065 4.065 21 C -0.134 4.134 22 C -0.013 4.013 23 N -0.220 5.220 24 C -0.063 4.063 25 C -0.191 4.191 26 C -0.011 4.011 27 C -0.006 4.006 28 C -0.168 4.168 29 H 0.086 0.914 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.195 0.805 33 H 0.062 0.938 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.077 0.923 37 H 0.108 0.892 38 H 0.153 0.847 39 H 0.185 0.815 40 H 0.200 0.800 41 H 0.223 0.777 42 H 0.187 0.813 43 H 0.143 0.857 44 H 0.114 0.886 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.711 -21.487 2.119 22.926 hybrid contribution 0.418 2.400 -1.202 2.716 sum 8.129 -19.087 0.917 20.766 Atomic orbital electron populations 1.22108 0.96177 1.00836 1.01180 1.19788 0.92938 0.83250 0.93487 1.42920 1.61274 1.08899 1.25526 1.18875 1.23264 0.91245 0.99640 0.91530 1.25242 1.02983 0.96969 0.99876 1.69848 1.52349 1.06599 1.34798 0.85684 0.79312 0.78113 0.80201 1.21348 1.23188 1.18109 1.22080 0.93911 1.01675 0.98445 1.21601 0.94816 0.98484 0.86007 1.48108 1.41632 1.33910 1.08510 1.18462 0.78633 0.78962 0.88917 1.90742 1.56727 1.64132 1.34045 1.19723 1.06901 0.93585 0.94936 1.21754 0.93289 1.00294 0.92266 1.21230 1.00203 0.96195 0.97013 1.21640 0.93254 0.92930 0.98661 1.19282 1.03019 0.96648 0.94436 1.23919 0.90854 0.88336 0.98198 1.67521 1.11675 1.41151 1.01662 1.22468 0.96094 0.93082 0.94612 1.21941 1.01925 0.95437 0.99828 1.18041 0.96471 0.91936 0.94661 1.21773 0.95111 0.98955 0.84807 1.22116 0.94798 0.99994 0.99903 0.91389 0.94503 0.93252 0.80465 0.93806 0.89396 0.89626 0.92267 0.89217 0.84659 0.81548 0.79999 0.77711 0.81298 0.85701 0.88597 0.91693 0.91804 0.91187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.61 8.44 71.98 0.61 -4.00 16 2 C 0.19 6.41 0.74 3.63 0.00 6.42 16 3 N -0.74 -30.62 3.94 -303.24 -1.20 -31.81 16 4 C -0.20 -10.15 9.16 84.03 0.77 -9.38 16 5 H 0.07 3.72 6.93 -2.91 -0.02 3.70 16 6 C -0.06 -3.30 5.50 84.86 0.47 -2.83 16 7 N -0.98 -60.25 13.97 21.65 0.30 -59.95 16 8 Si 0.94 43.89 27.74 68.60 1.90 45.79 16 9 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 10 H -0.30 -14.80 7.11 99.48 0.71 -14.10 16 11 H -0.26 -10.86 6.52 99.48 0.65 -10.21 16 12 C -0.12 -3.38 4.96 30.68 0.15 -3.23 16 13 C 0.11 3.39 6.15 86.37 0.53 3.92 16 14 N -0.59 -17.93 2.98 -823.59 -2.45 -20.38 16 15 C 0.56 17.67 6.50 86.67 0.56 18.23 16 16 O -0.58 -21.29 15.29 -4.05 -0.06 -21.35 16 17 C -0.15 -3.94 4.89 -19.92 -0.10 -4.04 16 18 C -0.06 -1.19 7.43 22.58 0.17 -1.02 16 19 C -0.13 -1.85 9.92 21.99 0.22 -1.63 16 20 C -0.05 -0.56 9.78 22.36 0.22 -0.34 16 21 C -0.13 -2.45 5.74 -21.33 -0.12 -2.57 16 22 C 0.16 2.57 11.05 85.32 0.94 3.51 16 23 N -0.51 -10.91 10.30 -195.39 -2.01 -12.92 16 24 C 0.08 1.77 11.07 84.14 0.93 2.70 16 25 C -0.17 -4.41 9.30 22.32 0.21 -4.21 16 26 C -0.01 -0.14 5.77 -21.11 -0.12 -0.26 16 27 C 0.12 3.48 5.26 86.22 0.45 3.93 16 28 C -0.13 -3.99 4.69 30.53 0.14 -3.85 16 29 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.04 1.35 7.27 -2.38 -0.02 1.33 16 31 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.36 14.87 4.32 -92.71 -0.40 14.47 16 33 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 34 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.06 1.92 6.94 -2.39 -0.02 1.90 16 37 H 0.09 2.66 7.03 -2.39 -0.02 2.64 16 38 H 0.14 2.84 7.39 -2.91 -0.02 2.82 16 39 H 0.17 1.38 8.06 -2.91 -0.02 1.36 16 40 H 0.18 0.61 8.06 -2.91 -0.02 0.59 16 41 H 0.21 1.44 8.06 -2.91 -0.02 1.41 16 42 H 0.17 2.94 8.06 -2.91 -0.02 2.92 16 43 H 0.13 3.53 6.61 -2.91 -0.02 3.51 16 44 H 0.10 2.51 4.77 -2.39 -0.01 2.50 16 45 H 0.06 2.30 7.74 -2.39 -0.02 2.28 16 46 H 0.06 2.24 7.31 -2.39 -0.02 2.22 16 47 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 Total: -1.00 -71.91 368.86 3.06 -68.85 By element: Atomic # 1 Polarization: 29.90 SS G_CDS: 0.54 Total: 30.44 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: 6.04 Total: 1.34 kcal Atomic # 7 Polarization: -119.71 SS G_CDS: -5.36 Total: -125.06 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.06 Total: -21.35 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 1.90 Total: 45.79 kcal Total: -71.91 3.06 -68.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724961026.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.181 kcal (2) G-P(sol) polarization free energy of solvation -71.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds