Wall clock time and date at job start Sat Apr 11 2020 05:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.33230 * 126.01607 * 2 1 4 4 C 1.31534 * 109.75955 * 180.17458 * 3 2 1 5 5 O 1.35209 * 125.49214 * 179.82511 * 4 3 2 6 6 N 1.34947 * 109.01524 * 359.56193 * 4 3 2 7 7 H 0.97001 * 126.54262 * 180.23916 * 6 4 3 8 8 C 1.36715 * 126.02154 * 179.69554 * 2 1 3 9 9 C 1.46382 * 126.82693 * 0.02562 * 8 2 1 10 10 O 1.21737 * 119.99813 * 103.83741 * 9 8 2 11 11 N 1.34771 * 119.99752 * 283.84440 * 9 8 2 12 12 C 1.46500 * 120.00271 * 5.18871 * 11 9 8 13 13 C 1.46504 * 119.99885 * 185.19049 * 11 9 8 14 14 C 1.52992 * 109.47453 * 89.99723 * 13 11 9 15 15 H 1.09003 * 109.47331 * 64.99620 * 14 13 11 16 16 C 1.52999 * 109.47545 * 185.00091 * 14 13 11 17 17 N 1.46900 * 109.47126 * 305.00117 * 14 13 11 18 18 C 1.46898 * 111.00409 * 154.99927 * 17 14 13 19 19 C 1.50696 * 109.47755 * 180.02562 * 18 17 14 20 20 O 1.21302 * 119.99410 * 0.02562 * 19 18 17 21 21 N 1.34770 * 120.00553 * 179.97438 * 19 18 17 22 22 C 1.37097 * 120.00306 * 179.97438 * 21 19 18 23 23 H 1.08001 * 119.99719 * 359.97438 * 22 21 19 24 24 C 1.38944 * 120.00087 * 179.97438 * 22 21 19 25 25 N 1.31413 * 120.00433 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 120.00031 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47083 * 60.00497 * 26 24 22 28 28 H 1.48504 * 109.47304 * 179.97438 * 26 24 22 29 29 H 1.48495 * 109.47250 * 300.00219 * 26 24 22 30 30 H 1.08997 * 109.47137 * 270.30402 * 1 2 3 31 31 H 1.09001 * 109.47443 * 30.30604 * 1 2 3 32 32 H 1.09000 * 109.47021 * 150.30549 * 1 2 3 33 33 H 0.96698 * 113.99968 * 269.69284 * 5 4 3 34 34 H 1.08991 * 109.47342 * 94.51313 * 12 11 9 35 35 H 1.09003 * 109.47025 * 214.51837 * 12 11 9 36 36 H 1.09004 * 109.47028 * 334.51059 * 12 11 9 37 37 H 1.09004 * 109.46894 * 209.99791 * 13 11 9 38 38 H 1.09003 * 109.47033 * 329.99574 * 13 11 9 39 39 H 1.09001 * 109.46787 * 60.00096 * 16 14 13 40 40 H 1.08997 * 109.47395 * 179.97438 * 16 14 13 41 41 H 1.08998 * 109.47032 * 299.99992 * 16 14 13 42 42 H 1.00904 * 111.00095 * 31.04619 * 17 14 13 43 43 H 1.09003 * 109.46840 * 300.00165 * 18 17 14 44 44 H 1.08997 * 109.47038 * 59.99959 * 18 17 14 45 45 H 0.97000 * 120.00116 * 0.02562 * 21 19 18 46 46 H 0.96996 * 120.00237 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2904 1.0776 0.0000 4 6 3.5531 0.7094 -0.0038 5 8 4.6149 1.5465 -0.0082 6 7 3.6181 -0.6385 0.0034 7 1 4.4243 -1.1778 0.0059 8 6 2.3110 -1.1057 0.0059 9 6 1.8793 -2.5044 0.0128 10 8 1.9411 -3.1655 -1.0076 11 7 1.4133 -3.0602 1.1487 12 6 1.2316 -2.2363 2.3464 13 6 1.0885 -4.4883 1.1858 14 6 2.3264 -5.2821 1.6077 15 1 2.5943 -5.0206 2.6315 16 6 2.0241 -6.7798 1.5264 17 7 3.4444 -4.9589 0.7114 18 6 4.7347 -5.1912 1.3740 19 6 5.8551 -4.8489 0.4262 20 8 5.6035 -4.4501 -0.6914 21 7 7.1367 -4.9848 0.8205 22 6 8.1560 -4.6739 -0.0420 23 1 7.9319 -4.3204 -1.0377 24 6 9.4772 -4.8136 0.3647 25 7 9.7499 -5.2442 1.5760 26 14 10.8660 -4.3906 -0.8108 27 1 10.7617 -2.9633 -1.2070 28 1 12.1704 -4.6235 -0.1402 29 1 10.7701 -5.2481 -2.0193 30 1 -0.3633 0.0055 1.0276 31 1 -0.3634 0.8872 -0.5186 32 1 -0.3633 -0.8927 -0.5091 33 1 4.9238 1.7853 -0.8929 34 1 0.2006 -1.8860 2.3935 35 1 1.4546 -2.8299 3.2330 36 1 1.9047 -1.3800 2.3039 37 1 0.2852 -4.6596 1.9025 38 1 0.7680 -4.8138 0.1962 39 1 1.7564 -7.0412 0.5026 40 1 2.9062 -7.3453 1.8265 41 1 1.1946 -7.0196 2.1915 42 1 3.3760 -4.0097 0.3757 43 1 4.8055 -4.5627 2.2618 44 1 4.8108 -6.2392 1.6637 45 1 7.3379 -5.3034 1.7143 46 1 10.6722 -5.3414 1.8600 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725495812.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:22 Heat of formation + Delta-G solvation = -37.619398 kcal Electronic energy + Delta-G solvation = -30704.882065 eV Core-core repulsion = 26438.633731 eV Total energy + Delta-G solvation = -4266.248334 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.41617 -40.07593 -38.30359 -37.54914 -36.70906 -35.06032 -33.92122 -33.39129 -31.54193 -31.18210 -30.64796 -27.87858 -27.50304 -26.42263 -25.63059 -24.03530 -22.72753 -21.40596 -20.44735 -19.78241 -19.34723 -18.95212 -17.96867 -17.65718 -16.86167 -16.67944 -16.29915 -15.73888 -15.61236 -15.19220 -14.73747 -14.50111 -14.27384 -14.07625 -13.86977 -13.53083 -13.40255 -13.11422 -12.89907 -12.86642 -12.68288 -12.60487 -12.52327 -12.14855 -12.07570 -11.89602 -11.69849 -11.58542 -11.43274 -11.12545 -10.92534 -10.59142 -10.48117 -10.25852 -10.22857 -10.00923 -9.54401 -8.92187 -8.47769 -8.45559 -8.05915 -7.99164 -6.46027 -3.87190 1.33939 1.95072 2.43896 2.75738 2.95202 3.16117 3.22379 3.26535 3.73899 3.85702 4.05538 4.26881 4.38300 4.68834 4.77624 4.81546 4.85550 4.97658 5.12066 5.19712 5.20998 5.24766 5.37318 5.40819 5.47259 5.51033 5.67873 5.69119 5.70421 5.71335 5.76593 5.95196 5.99104 6.13932 6.23023 6.24238 6.37801 6.54875 6.99811 7.25940 7.43916 7.50390 7.63698 7.66912 7.91144 8.01629 8.57045 9.13354 9.49533 10.01412 10.71558 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009845 B = 0.003820 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2843.338895 B = 7329.024505 C = 9519.955981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.068 3.932 3 N -0.482 5.482 4 C 0.400 3.600 5 O -0.440 6.440 6 N -0.537 5.537 7 H 0.432 0.568 8 C -0.061 4.061 9 C 0.588 3.412 10 O -0.488 6.488 11 N -0.612 5.612 12 C 0.077 3.923 13 C 0.112 3.888 14 C 0.065 3.935 15 H 0.042 0.958 16 C -0.137 4.137 17 N -0.657 5.657 18 C 0.048 3.952 19 C 0.437 3.563 20 O -0.580 6.580 21 N -0.563 5.563 22 C -0.301 4.301 23 H 0.102 0.898 24 C 0.024 3.976 25 N -0.901 5.901 26 Si 0.930 3.070 27 H -0.274 1.274 28 H -0.284 1.284 29 H -0.273 1.273 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.407 0.593 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.054 0.946 42 H 0.346 0.654 43 H 0.037 0.963 44 H 0.087 0.913 45 H 0.392 0.608 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.523 6.690 5.148 20.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.066 4.066 3 N -0.213 5.213 4 C 0.099 3.901 5 O -0.241 6.241 6 N -0.154 5.154 7 H 0.273 0.727 8 C -0.179 4.179 9 C 0.373 3.627 10 O -0.359 6.359 11 N -0.347 5.347 12 C -0.066 4.066 13 C -0.010 4.010 14 C -0.046 4.046 15 H 0.060 0.940 16 C -0.196 4.196 17 N -0.295 5.295 18 C -0.084 4.084 19 C 0.222 3.778 20 O -0.464 6.464 21 N -0.199 5.199 22 C -0.431 4.431 23 H 0.120 0.880 24 C -0.178 4.178 25 N -0.542 5.542 26 Si 0.757 3.243 27 H -0.200 1.200 28 H -0.209 1.209 29 H -0.198 1.198 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.265 0.735 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.106 0.894 38 H 0.116 0.884 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.169 0.831 43 H 0.055 0.945 44 H 0.105 0.895 45 H 0.225 0.775 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -18.688 6.838 4.201 20.338 hybrid contribution 2.130 -0.218 0.327 2.166 sum -16.558 6.620 4.528 18.398 Atomic orbital electron populations 1.20180 0.86629 1.03462 1.02801 1.20709 0.96345 0.86128 1.03419 1.70164 0.98551 1.30052 1.22577 1.20083 0.87286 0.78575 1.04142 1.84834 1.43351 1.61375 1.34564 1.43680 1.08695 1.07965 1.55045 0.72711 1.20400 0.84138 0.95014 1.18365 1.16885 0.78173 0.83984 0.83669 1.90999 1.51912 1.61643 1.31369 1.47795 1.65868 1.09841 1.11176 1.21855 1.02135 0.95683 0.86916 1.21836 0.96741 0.78008 1.04437 1.21963 0.91585 0.96351 0.94745 0.94029 1.21738 1.01177 0.94168 1.02508 1.60174 0.99578 1.32808 1.36891 1.21757 0.89930 1.01754 0.95007 1.19850 0.83661 0.85290 0.88966 1.90553 1.83476 1.51061 1.21274 1.41864 1.04082 1.58204 1.15796 1.19644 0.84513 1.41476 0.97444 0.88030 1.25254 0.98587 0.97193 0.96781 1.69600 1.20803 1.46264 1.17571 0.85927 0.79415 0.79114 0.79823 1.19966 1.20910 1.19828 0.90623 0.90220 0.90925 0.73475 0.91804 0.90930 0.90909 0.89382 0.88354 0.91526 0.92213 0.92673 0.83102 0.94520 0.89504 0.77515 0.91780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.66 10.23 36.00 0.37 -0.29 16 2 C 0.07 0.86 6.75 -82.54 -0.56 0.30 16 3 N -0.48 -6.69 11.22 -10.83 -0.12 -6.81 16 4 C 0.40 5.34 9.43 -89.59 -0.84 4.50 16 5 O -0.44 -4.92 13.62 -17.32 -0.24 -5.16 16 6 N -0.54 -7.47 6.24 -10.90 -0.07 -7.54 16 7 H 0.43 6.22 8.96 -40.82 -0.37 5.86 16 8 C -0.06 -0.85 5.10 -81.98 -0.42 -1.27 16 9 C 0.59 8.56 5.30 -12.99 -0.07 8.49 16 10 O -0.49 -9.13 15.60 5.16 0.08 -9.05 16 11 N -0.61 -6.82 2.66 -183.23 -0.49 -7.31 16 12 C 0.08 0.62 10.25 59.85 0.61 1.24 16 13 C 0.11 1.18 5.24 -4.04 -0.02 1.16 16 14 C 0.06 0.81 2.95 -67.72 -0.20 0.61 16 15 H 0.04 0.48 7.80 -51.93 -0.40 0.07 16 16 C -0.14 -1.52 9.41 37.16 0.35 -1.17 16 17 N -0.66 -11.47 5.89 -108.00 -0.64 -12.11 16 18 C 0.05 0.89 5.96 -4.98 -0.03 0.86 16 19 C 0.44 10.50 7.82 -10.99 -0.09 10.41 16 20 O -0.58 -16.04 15.78 5.54 0.09 -15.96 16 21 N -0.56 -14.28 5.29 -10.97 -0.06 -14.34 16 22 C -0.30 -8.39 9.68 -14.94 -0.14 -8.53 16 23 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 24 C 0.02 0.63 5.50 -17.47 -0.10 0.54 16 25 N -0.90 -24.41 13.05 55.50 0.72 -23.69 16 26 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16 27 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 28 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 29 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.64 7.93 -51.93 -0.41 0.23 16 33 H 0.41 2.53 9.06 45.56 0.41 2.94 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.48 8.11 -51.93 -0.42 0.06 16 36 H 0.07 0.68 6.47 -51.93 -0.34 0.35 16 37 H 0.09 0.61 8.07 -51.93 -0.42 0.19 16 38 H 0.10 1.20 7.36 -51.93 -0.38 0.82 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.71 7.45 -51.93 -0.39 0.32 16 41 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.35 6.49 4.33 -39.29 -0.17 6.32 16 43 H 0.04 0.61 8.06 -51.93 -0.42 0.19 16 44 H 0.09 1.48 7.43 -51.93 -0.39 1.09 16 45 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 46 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 388.96 15.07 5.86 5.86 Total: -1.00 -36.32 388.96 -6.65 -42.97 By element: Atomic # 1 Polarization: 25.93 SS G_CDS: -5.64 Total: 20.29 kcal Atomic # 6 Polarization: 17.97 SS G_CDS: -1.13 Total: 16.84 kcal Atomic # 7 Polarization: -71.15 SS G_CDS: -0.65 Total: -71.79 kcal Atomic # 8 Polarization: -30.09 SS G_CDS: -0.07 Total: -30.16 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.32 -6.65 -42.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725495812.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.347 kcal (2) G-P(sol) polarization free energy of solvation -36.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds