Wall clock time and date at job start Sat Apr 11 2020 05:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.33224 * 126.02104 * 2 1 4 4 C 1.31543 * 109.76046 * 180.16939 * 3 2 1 5 5 O 1.35210 * 125.48713 * 179.82275 * 4 3 2 6 6 N 1.34935 * 109.01495 * 359.56091 * 4 3 2 7 7 H 0.96999 * 126.54432 * 180.23476 * 6 4 3 8 8 C 1.36720 * 126.01810 * 179.68879 * 2 1 3 9 9 C 1.46379 * 126.82817 * 0.02562 * 8 2 1 10 10 O 1.21746 * 119.99562 * 354.47253 * 9 8 2 11 11 N 1.34773 * 120.00432 * 174.46953 * 9 8 2 12 12 C 1.46494 * 119.99909 * 5.15611 * 11 9 8 13 13 C 1.46501 * 120.00116 * 185.15277 * 11 9 8 14 14 C 1.52996 * 109.47207 * 83.88346 * 13 11 9 15 15 H 1.09004 * 109.47137 * 297.29388 * 14 13 11 16 16 C 1.52999 * 109.47253 * 177.29451 * 14 13 11 17 17 N 1.46898 * 109.46996 * 57.29106 * 14 13 11 18 18 C 1.46903 * 111.00060 * 206.15270 * 17 14 13 19 19 C 1.50697 * 109.47058 * 180.02562 * 18 17 14 20 20 O 1.21295 * 120.00108 * 359.97438 * 19 18 17 21 21 N 1.34783 * 119.99901 * 180.02562 * 19 18 17 22 22 C 1.37097 * 119.99949 * 179.97438 * 21 19 18 23 23 H 1.08006 * 120.00091 * 0.02562 * 22 21 19 24 24 C 1.38949 * 120.00034 * 179.97438 * 22 21 19 25 25 N 1.31414 * 119.99875 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 119.99959 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47108 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.46963 * 120.00453 * 26 24 22 29 29 H 1.48499 * 109.46979 * 239.99814 * 26 24 22 30 30 H 1.09000 * 109.47235 * 270.31031 * 1 2 3 31 31 H 1.09002 * 109.46352 * 30.30980 * 1 2 3 32 32 H 1.09001 * 109.46919 * 150.30813 * 1 2 3 33 33 H 0.96701 * 113.99926 * 269.69046 * 5 4 3 34 34 H 1.09001 * 109.47570 * 57.76693 * 12 11 9 35 35 H 1.09002 * 109.47171 * 177.76837 * 12 11 9 36 36 H 1.08997 * 109.47035 * 297.76290 * 12 11 9 37 37 H 1.08997 * 109.47219 * 203.88619 * 13 11 9 38 38 H 1.09002 * 109.47129 * 323.88635 * 13 11 9 39 39 H 1.08996 * 109.47113 * 59.99936 * 16 14 13 40 40 H 1.09002 * 109.47110 * 180.02562 * 16 14 13 41 41 H 1.09004 * 109.46998 * 300.00022 * 16 14 13 42 42 H 1.00899 * 111.00295 * 330.10888 * 17 14 13 43 43 H 1.08998 * 109.47286 * 300.00101 * 18 17 14 44 44 H 1.09003 * 109.46753 * 60.00123 * 18 17 14 45 45 H 0.97000 * 119.99683 * 0.02562 * 21 19 18 46 46 H 0.96996 * 120.00198 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2904 1.0775 0.0000 4 6 3.5532 0.7092 -0.0037 5 8 4.6150 1.5463 -0.0081 6 7 3.6181 -0.6386 0.0036 7 1 4.4243 -1.1780 0.0062 8 6 2.3109 -1.1058 0.0060 9 6 1.8792 -2.5045 0.0131 10 8 0.6969 -2.7760 0.1156 11 7 2.7905 -3.4916 -0.0940 12 6 4.2199 -3.1710 -0.1037 13 6 2.3516 -4.8853 -0.2006 14 6 2.0154 -5.2040 -1.6587 15 1 1.1851 -4.5778 -1.9854 16 6 1.6218 -6.6774 -1.7811 17 7 3.1894 -4.9391 -2.5011 18 6 2.7886 -4.6255 -3.8791 19 6 4.0166 -4.3609 -4.7115 20 8 5.1174 -4.4265 -4.2064 21 7 3.8917 -4.0502 -6.0171 22 6 5.0088 -3.8089 -6.7743 23 1 5.9891 -3.8682 -6.3247 24 6 4.8801 -3.4892 -8.1203 25 7 3.6874 -3.4175 -8.6675 26 14 6.4023 -3.1611 -9.1521 27 1 7.6142 -3.3049 -8.3061 28 1 6.4615 -4.1360 -10.2707 29 1 6.3412 -1.7823 -9.7000 30 1 -0.3634 0.0056 1.0276 31 1 -0.3632 0.8872 -0.5187 32 1 -0.3633 -0.8928 -0.5090 33 1 4.9240 1.7850 -0.8929 34 1 4.4776 -2.6320 0.8080 35 1 4.7987 -4.0932 -0.1565 36 1 4.4470 -2.5495 -0.9698 37 1 3.1496 -5.5446 0.1408 38 1 1.4666 -5.0358 0.4176 39 1 0.7508 -6.8739 -1.1561 40 1 1.3827 -6.9046 -2.8200 41 1 2.4521 -7.3036 -1.4544 42 1 3.7544 -4.1994 -2.1116 43 1 2.2403 -5.4688 -4.2989 44 1 2.1512 -3.7412 -3.8798 45 1 3.0113 -3.9966 -6.4207 46 1 3.5974 -3.1940 -9.6070 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725495815.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:25 Heat of formation + Delta-G solvation = -29.453153 kcal Electronic energy + Delta-G solvation = -30258.577629 eV Core-core repulsion = 25992.683410 eV Total energy + Delta-G solvation = -4265.894219 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.62700 -40.04016 -38.40841 -37.72861 -36.98757 -35.33780 -33.98016 -33.33998 -31.52334 -31.18639 -30.71076 -28.00654 -27.76024 -26.57844 -25.58047 -24.02458 -22.75901 -21.91603 -20.46952 -20.07946 -19.34265 -18.90221 -17.96316 -17.64264 -16.93674 -16.65919 -16.43886 -16.00431 -15.53060 -15.28884 -14.98297 -14.51314 -14.34748 -14.15687 -13.89195 -13.52782 -13.51439 -13.39521 -12.91726 -12.84680 -12.76542 -12.61469 -12.52893 -12.22966 -12.01394 -11.90990 -11.75292 -11.71938 -11.46545 -11.16427 -10.92614 -10.56807 -10.40050 -10.33350 -10.28612 -10.12503 -9.58225 -9.12866 -8.60960 -8.51653 -8.14477 -8.02315 -6.47419 -3.88770 0.87514 2.09552 2.38868 2.60479 3.00825 3.11222 3.22221 3.28592 3.56376 3.83714 4.01617 4.15314 4.29372 4.52109 4.61360 4.71033 4.82493 4.87726 4.96960 5.11609 5.19341 5.22533 5.28170 5.32541 5.49898 5.55934 5.63975 5.72667 5.74586 5.80030 5.81052 5.95059 5.99179 6.06725 6.19968 6.24495 6.34586 6.36400 6.88770 7.16674 7.23587 7.49157 7.52623 7.58670 7.78933 7.99866 8.54472 9.11348 9.47901 9.98543 10.70231 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009596 B = 0.003290 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2917.249832 B = 8509.360243 C =10158.498125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.117 3.883 3 N -0.490 5.490 4 C 0.412 3.588 5 O -0.443 6.443 6 N -0.560 5.560 7 H 0.426 0.574 8 C -0.087 4.087 9 C 0.599 3.401 10 O -0.517 6.517 11 N -0.616 5.616 12 C 0.057 3.943 13 C 0.116 3.884 14 C 0.063 3.937 15 H 0.050 0.950 16 C -0.136 4.136 17 N -0.662 5.662 18 C 0.050 3.950 19 C 0.440 3.560 20 O -0.587 6.587 21 N -0.562 5.562 22 C -0.301 4.301 23 H 0.103 0.897 24 C 0.023 3.977 25 N -0.899 5.899 26 Si 0.929 3.071 27 H -0.268 1.268 28 H -0.281 1.281 29 H -0.281 1.281 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.411 0.589 34 H 0.063 0.937 35 H 0.104 0.896 36 H 0.067 0.933 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.056 0.944 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.343 0.657 43 H 0.087 0.913 44 H 0.040 0.960 45 H 0.392 0.608 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.655 2.477 17.757 18.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.018 4.018 3 N -0.221 5.221 4 C 0.110 3.890 5 O -0.245 6.245 6 N -0.185 5.185 7 H 0.273 0.727 8 C -0.201 4.201 9 C 0.388 3.612 10 O -0.392 6.392 11 N -0.350 5.350 12 C -0.087 4.087 13 C -0.006 4.006 14 C -0.048 4.048 15 H 0.068 0.932 16 C -0.195 4.195 17 N -0.297 5.297 18 C -0.083 4.083 19 C 0.226 3.774 20 O -0.472 6.472 21 N -0.198 5.198 22 C -0.431 4.431 23 H 0.121 0.879 24 C -0.179 4.179 25 N -0.541 5.541 26 Si 0.756 3.244 27 H -0.192 1.192 28 H -0.207 1.207 29 H -0.207 1.207 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.109 0.891 33 H 0.269 0.731 34 H 0.081 0.919 35 H 0.122 0.878 36 H 0.085 0.915 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.164 0.836 43 H 0.105 0.895 44 H 0.058 0.942 45 H 0.226 0.774 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.676 2.495 18.428 18.956 hybrid contribution 1.034 0.255 -1.426 1.780 sum -2.642 2.750 17.002 17.424 Atomic orbital electron populations 1.20327 0.85893 1.03957 1.03284 1.20958 0.96891 0.85845 0.98123 1.70286 0.98675 1.30408 1.22720 1.20254 0.87459 0.79050 1.02207 1.84798 1.43242 1.61623 1.34822 1.44704 1.09243 1.08081 1.56486 0.72654 1.20696 0.83118 0.95091 1.21197 1.16720 0.85551 0.82472 0.76487 1.90842 1.15809 1.82711 1.49868 1.47754 1.06252 1.07412 1.73551 1.22212 0.81509 1.04297 1.00669 1.21861 1.02025 0.79857 0.96834 1.21976 0.92924 0.97711 0.92225 0.93220 1.21716 1.00846 0.94638 1.02252 1.60268 1.18743 1.49575 1.01086 1.21725 0.96621 1.00098 0.89846 1.19796 0.89968 0.84362 0.83286 1.90492 1.27270 1.57322 1.72104 1.41882 1.09836 1.60544 1.07545 1.19738 0.88187 1.44075 0.91056 0.87893 1.25276 0.98091 0.97313 0.97201 1.69620 1.22099 1.48551 1.13782 0.85806 0.81183 0.77901 0.79482 1.19241 1.20657 1.20734 0.90384 0.90709 0.89123 0.73079 0.91869 0.87773 0.91511 0.89049 0.88939 0.92522 0.92170 0.91805 0.83604 0.89480 0.94167 0.77438 0.91834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 9.82 36.00 0.35 -0.51 16 2 C 0.12 1.54 7.14 -82.54 -0.59 0.95 16 3 N -0.49 -6.65 11.22 -10.83 -0.12 -6.77 16 4 C 0.41 4.70 9.43 -89.60 -0.84 3.85 16 5 O -0.44 -3.88 13.62 -17.33 -0.24 -4.11 16 6 N -0.56 -5.74 5.33 -10.90 -0.06 -5.80 16 7 H 0.43 3.33 4.70 -40.82 -0.19 3.13 16 8 C -0.09 -1.08 6.79 -81.97 -0.56 -1.63 16 9 C 0.60 7.65 7.58 -12.99 -0.10 7.55 16 10 O -0.52 -7.60 14.52 5.15 0.07 -7.52 16 11 N -0.62 -6.57 2.52 -183.24 -0.46 -7.03 16 12 C 0.06 0.47 6.88 59.84 0.41 0.88 16 13 C 0.12 1.20 5.05 -4.04 -0.02 1.18 16 14 C 0.06 0.78 2.89 -67.72 -0.20 0.59 16 15 H 0.05 0.70 7.78 -51.93 -0.40 0.29 16 16 C -0.14 -1.49 9.43 37.16 0.35 -1.14 16 17 N -0.66 -10.27 5.94 -107.99 -0.64 -10.91 16 18 C 0.05 0.89 5.96 -4.98 -0.03 0.86 16 19 C 0.44 10.20 7.82 -10.98 -0.09 10.12 16 20 O -0.59 -15.28 15.78 5.54 0.09 -15.19 16 21 N -0.56 -14.08 5.29 -10.96 -0.06 -14.14 16 22 C -0.30 -8.26 9.68 -14.93 -0.14 -8.40 16 23 H 0.10 2.95 7.16 -52.48 -0.38 2.58 16 24 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 25 N -0.90 -24.26 13.05 55.50 0.72 -23.53 16 26 Si 0.93 20.66 29.55 -169.99 -5.02 15.64 16 27 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 28 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 29 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.09 1.07 6.59 -51.93 -0.34 0.73 16 33 H 0.41 1.67 9.06 45.56 0.41 2.08 16 34 H 0.06 0.40 6.79 -51.93 -0.35 0.04 16 35 H 0.10 0.80 7.63 -51.93 -0.40 0.40 16 36 H 0.07 0.61 6.52 -51.93 -0.34 0.27 16 37 H 0.09 0.79 7.78 -51.93 -0.40 0.39 16 38 H 0.09 0.93 7.54 -51.93 -0.39 0.54 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.71 7.53 -51.93 -0.39 0.32 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.34 5.32 5.24 -39.29 -0.21 5.12 16 43 H 0.09 1.46 7.52 -51.93 -0.39 1.07 16 44 H 0.04 0.69 8.05 -51.93 -0.42 0.27 16 45 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 46 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 380.76 15.07 5.74 5.74 Total: -1.00 -34.94 380.76 -6.86 -41.80 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: -5.34 Total: 17.02 kcal Atomic # 6 Polarization: 16.36 SS G_CDS: -1.55 Total: 14.81 kcal Atomic # 7 Polarization: -67.57 SS G_CDS: -0.62 Total: -68.19 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: -0.07 Total: -26.82 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.94 -6.86 -41.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725495815.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.350 kcal (2) G-P(sol) polarization free energy of solvation -34.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds