Wall clock time and date at job start Sat Apr 11 2020 05:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.33224 * 126.02104 * 2 1 4 4 C 1.31543 * 109.76046 * 180.16939 * 3 2 1 5 5 O 1.35210 * 125.48713 * 179.82275 * 4 3 2 6 6 N 1.34935 * 109.01495 * 359.56091 * 4 3 2 7 7 H 0.96999 * 126.54432 * 180.23476 * 6 4 3 8 8 C 1.36720 * 126.01810 * 179.68879 * 2 1 3 9 9 C 1.46379 * 126.82817 * 0.02562 * 8 2 1 10 10 O 1.21746 * 119.99562 * 354.47253 * 9 8 2 11 11 N 1.34773 * 120.00432 * 174.46953 * 9 8 2 12 12 C 1.46494 * 119.99909 * 5.15611 * 11 9 8 13 13 C 1.46501 * 120.00116 * 185.15277 * 11 9 8 14 14 C 1.52996 * 109.47207 * 83.88346 * 13 11 9 15 15 H 1.09004 * 109.47137 * 297.29388 * 14 13 11 16 16 C 1.52999 * 109.47253 * 177.29451 * 14 13 11 17 17 N 1.46898 * 109.46996 * 57.29106 * 14 13 11 18 18 C 1.46903 * 111.00060 * 206.15270 * 17 14 13 19 19 C 1.50697 * 109.47058 * 180.02562 * 18 17 14 20 20 O 1.21295 * 120.00108 * 359.97438 * 19 18 17 21 21 N 1.34783 * 119.99901 * 180.02562 * 19 18 17 22 22 C 1.37097 * 119.99949 * 179.97438 * 21 19 18 23 23 H 1.08006 * 120.00091 * 0.02562 * 22 21 19 24 24 C 1.38949 * 120.00034 * 179.97438 * 22 21 19 25 25 N 1.31414 * 119.99875 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 119.99959 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47108 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.46963 * 120.00453 * 26 24 22 29 29 H 1.48499 * 109.46979 * 239.99814 * 26 24 22 30 30 H 1.09000 * 109.47235 * 270.31031 * 1 2 3 31 31 H 1.09002 * 109.46352 * 30.30980 * 1 2 3 32 32 H 1.09001 * 109.46919 * 150.30813 * 1 2 3 33 33 H 0.96701 * 113.99926 * 269.69046 * 5 4 3 34 34 H 1.09001 * 109.47570 * 57.76693 * 12 11 9 35 35 H 1.09002 * 109.47171 * 177.76837 * 12 11 9 36 36 H 1.08997 * 109.47035 * 297.76290 * 12 11 9 37 37 H 1.08997 * 109.47219 * 203.88619 * 13 11 9 38 38 H 1.09002 * 109.47129 * 323.88635 * 13 11 9 39 39 H 1.08996 * 109.47113 * 59.99936 * 16 14 13 40 40 H 1.09002 * 109.47110 * 180.02562 * 16 14 13 41 41 H 1.09004 * 109.46998 * 300.00022 * 16 14 13 42 42 H 1.00899 * 111.00295 * 330.10888 * 17 14 13 43 43 H 1.08998 * 109.47286 * 300.00101 * 18 17 14 44 44 H 1.09003 * 109.46753 * 60.00123 * 18 17 14 45 45 H 0.97000 * 119.99683 * 0.02562 * 21 19 18 46 46 H 0.96996 * 120.00198 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2904 1.0775 0.0000 4 6 3.5532 0.7092 -0.0037 5 8 4.6150 1.5463 -0.0081 6 7 3.6181 -0.6386 0.0036 7 1 4.4243 -1.1780 0.0062 8 6 2.3109 -1.1058 0.0060 9 6 1.8792 -2.5045 0.0131 10 8 0.6969 -2.7760 0.1156 11 7 2.7905 -3.4916 -0.0940 12 6 4.2199 -3.1710 -0.1037 13 6 2.3516 -4.8853 -0.2006 14 6 2.0154 -5.2040 -1.6587 15 1 1.1851 -4.5778 -1.9854 16 6 1.6218 -6.6774 -1.7811 17 7 3.1894 -4.9391 -2.5011 18 6 2.7886 -4.6255 -3.8791 19 6 4.0166 -4.3609 -4.7115 20 8 5.1174 -4.4265 -4.2064 21 7 3.8917 -4.0502 -6.0171 22 6 5.0088 -3.8089 -6.7743 23 1 5.9891 -3.8682 -6.3247 24 6 4.8801 -3.4892 -8.1203 25 7 3.6874 -3.4175 -8.6675 26 14 6.4023 -3.1611 -9.1521 27 1 7.6142 -3.3049 -8.3061 28 1 6.4615 -4.1360 -10.2707 29 1 6.3412 -1.7823 -9.7000 30 1 -0.3634 0.0056 1.0276 31 1 -0.3632 0.8872 -0.5187 32 1 -0.3633 -0.8928 -0.5090 33 1 4.9240 1.7850 -0.8929 34 1 4.4776 -2.6320 0.8080 35 1 4.7987 -4.0932 -0.1565 36 1 4.4470 -2.5495 -0.9698 37 1 3.1496 -5.5446 0.1408 38 1 1.4666 -5.0358 0.4176 39 1 0.7508 -6.8739 -1.1561 40 1 1.3827 -6.9046 -2.8200 41 1 2.4521 -7.3036 -1.4544 42 1 3.7544 -4.1994 -2.1116 43 1 2.2403 -5.4688 -4.2989 44 1 2.1512 -3.7412 -3.8798 45 1 3.0113 -3.9966 -6.4207 46 1 3.5974 -3.1940 -9.6070 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725495815.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:24 Heat of formation + Delta-G solvation = -60.093570 kcal Electronic energy + Delta-G solvation = -30259.906297 eV Core-core repulsion = 25992.683410 eV Total energy + Delta-G solvation = -4267.222887 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.51353 -40.99638 -40.14595 -38.53911 -38.08541 -36.40618 -35.89316 -34.28026 -33.31939 -32.46377 -31.71428 -28.86630 -28.58925 -28.13081 -26.62481 -25.68149 -23.63664 -22.84534 -21.45239 -21.15334 -20.96244 -19.95136 -19.71992 -18.52145 -18.04797 -17.71563 -17.36993 -17.27332 -16.79915 -16.54877 -16.29013 -16.13999 -15.61350 -15.38638 -15.17531 -14.83119 -14.39012 -14.33638 -14.20092 -13.85251 -13.65658 -13.57280 -13.50826 -13.42012 -13.37863 -13.06866 -12.93058 -12.83014 -12.76134 -12.60772 -12.41600 -12.11900 -11.98306 -11.53517 -11.48825 -11.24151 -11.08556 -10.38654 -10.04783 -10.01658 -9.50804 -9.42402 -8.48904 -5.98222 -0.02551 1.25430 1.35158 1.41099 1.49721 1.55050 1.76253 1.99934 2.06826 2.26604 2.76432 2.85131 3.18107 3.33567 3.47213 3.76178 3.84899 3.88275 3.95994 4.13296 4.18118 4.22228 4.35715 4.38210 4.40813 4.51004 4.56146 4.62287 4.74781 4.79221 4.88836 4.92257 4.94652 5.04421 5.23777 5.38753 5.40024 5.45696 5.68680 5.82750 6.00053 6.07455 6.36998 6.54101 6.55673 6.62623 6.85712 7.09035 7.51870 8.05379 8.68752 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009596 B = 0.003290 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2917.249832 B = 8509.360243 C =10158.498125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.100 3.900 3 N -0.520 5.520 4 C 0.417 3.583 5 O -0.442 6.442 6 N -0.547 5.547 7 H 0.437 0.563 8 C -0.097 4.097 9 C 0.595 3.405 10 O -0.542 6.542 11 N -0.613 5.613 12 C 0.051 3.949 13 C 0.119 3.881 14 C 0.065 3.935 15 H 0.034 0.966 16 C -0.132 4.132 17 N -0.666 5.666 18 C 0.064 3.936 19 C 0.440 3.560 20 O -0.616 6.616 21 N -0.573 5.573 22 C -0.333 4.333 23 H 0.083 0.917 24 C -0.013 4.013 25 N -0.921 5.921 26 Si 0.994 3.006 27 H -0.270 1.270 28 H -0.272 1.272 29 H -0.272 1.272 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.431 0.569 34 H 0.087 0.913 35 H 0.115 0.885 36 H 0.058 0.942 37 H 0.114 0.886 38 H 0.098 0.902 39 H 0.077 0.923 40 H 0.048 0.952 41 H 0.068 0.932 42 H 0.342 0.658 43 H 0.101 0.899 44 H 0.048 0.952 45 H 0.394 0.606 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.966 2.190 18.257 18.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.036 4.036 3 N -0.251 5.251 4 C 0.115 3.885 5 O -0.247 6.247 6 N -0.174 5.174 7 H 0.286 0.714 8 C -0.212 4.212 9 C 0.385 3.615 10 O -0.420 6.420 11 N -0.345 5.345 12 C -0.092 4.092 13 C -0.003 4.003 14 C -0.045 4.045 15 H 0.052 0.948 16 C -0.191 4.191 17 N -0.301 5.301 18 C -0.069 4.069 19 C 0.227 3.773 20 O -0.503 6.503 21 N -0.209 5.209 22 C -0.462 4.462 23 H 0.101 0.899 24 C -0.213 4.213 25 N -0.562 5.562 26 Si 0.817 3.183 27 H -0.194 1.194 28 H -0.197 1.197 29 H -0.197 1.197 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.294 0.706 34 H 0.105 0.895 35 H 0.133 0.867 36 H 0.076 0.924 37 H 0.132 0.868 38 H 0.116 0.884 39 H 0.096 0.904 40 H 0.067 0.933 41 H 0.087 0.913 42 H 0.163 0.837 43 H 0.119 0.881 44 H 0.066 0.934 45 H 0.228 0.772 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.968 2.194 18.922 19.278 hybrid contribution 0.853 0.360 -1.539 1.796 sum -2.114 2.554 17.383 17.696 Atomic orbital electron populations 1.20312 0.85200 1.03750 1.03800 1.21288 0.97725 0.86163 0.98389 1.70255 0.99730 1.31030 1.24125 1.20355 0.87595 0.79614 1.00985 1.84771 1.42211 1.61029 1.36716 1.44606 1.09044 1.07830 1.55878 0.71370 1.20686 0.83830 0.94949 1.21737 1.16817 0.85499 0.82878 0.76355 1.90820 1.16844 1.83094 1.51251 1.47803 1.06908 1.07213 1.72547 1.22378 0.80230 1.05091 1.01476 1.21912 1.03190 0.79946 0.95277 1.22051 0.91130 0.98430 0.92933 0.94811 1.21699 1.01900 0.93404 1.02057 1.60318 1.20122 1.49377 1.00269 1.21558 0.93911 1.00966 0.90481 1.20684 0.91242 0.82408 0.82938 1.90461 1.29094 1.58122 1.72604 1.41960 1.09367 1.61329 1.08286 1.19725 0.88191 1.46156 0.92128 0.89938 1.26071 1.01060 0.96442 0.97712 1.69687 1.23639 1.48547 1.14345 0.84859 0.77477 0.78203 0.77740 1.19443 1.19741 1.19687 0.89507 0.90047 0.90049 0.70630 0.89505 0.86698 0.92365 0.86828 0.88400 0.90419 0.93287 0.91340 0.83697 0.88097 0.93404 0.77220 0.91303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.65 9.82 71.24 0.70 -0.95 16 2 C 0.10 2.61 7.14 41.99 0.30 2.91 16 3 N -0.52 -13.92 11.22 -301.66 -3.39 -17.31 16 4 C 0.42 9.10 9.43 179.99 1.70 10.80 16 5 O -0.44 -7.07 13.62 -84.91 -1.16 -8.22 16 6 N -0.55 -10.63 5.33 -300.14 -1.60 -12.23 16 7 H 0.44 6.15 4.70 -92.71 -0.44 5.72 16 8 C -0.10 -2.37 6.79 39.80 0.27 -2.09 16 9 C 0.60 14.81 7.58 86.36 0.65 15.46 16 10 O -0.54 -15.81 14.52 -4.49 -0.07 -15.88 16 11 N -0.61 -12.15 2.52 -851.84 -2.14 -14.29 16 12 C 0.05 0.76 6.88 127.77 0.88 1.64 16 13 C 0.12 2.20 5.05 86.38 0.44 2.64 16 14 C 0.07 1.52 2.89 44.91 0.13 1.65 16 15 H 0.03 0.92 7.78 -2.38 -0.02 0.90 16 16 C -0.13 -2.64 9.43 71.98 0.68 -1.96 16 17 N -0.67 -19.86 5.94 -495.58 -2.94 -22.80 16 18 C 0.06 2.22 5.96 85.56 0.51 2.73 16 19 C 0.44 20.46 7.82 87.65 0.69 21.15 16 20 O -0.62 -32.27 15.78 -3.08 -0.05 -32.32 16 21 N -0.57 -29.07 5.29 -306.97 -1.62 -30.69 16 22 C -0.33 -18.49 9.68 84.04 0.81 -17.67 16 23 H 0.08 4.85 7.16 -2.91 -0.02 4.82 16 24 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 25 N -0.92 -49.43 13.05 21.66 0.28 -49.14 16 26 Si 0.99 41.97 29.55 68.60 2.03 44.00 16 27 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 28 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 29 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 30 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.08 1.97 6.59 -2.39 -0.02 1.96 16 33 H 0.43 2.77 9.06 -74.06 -0.67 2.10 16 34 H 0.09 0.89 6.79 -2.39 -0.02 0.87 16 35 H 0.11 1.50 7.63 -2.39 -0.02 1.48 16 36 H 0.06 0.99 6.52 -2.39 -0.02 0.98 16 37 H 0.11 1.63 7.78 -2.39 -0.02 1.61 16 38 H 0.10 1.78 7.54 -2.39 -0.02 1.76 16 39 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.05 1.09 7.53 -2.39 -0.02 1.07 16 41 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 42 H 0.34 10.23 5.24 -89.69 -0.47 9.76 16 43 H 0.10 3.28 7.52 -2.39 -0.02 3.26 16 44 H 0.05 1.62 8.05 -2.39 -0.02 1.60 16 45 H 0.39 19.37 7.90 -92.71 -0.73 18.64 16 46 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 Total: -1.00 -74.94 380.76 -3.66 -78.60 By element: Atomic # 1 Polarization: 45.43 SS G_CDS: -1.23 Total: 44.19 kcal Atomic # 6 Polarization: 27.86 SS G_CDS: 8.22 Total: 36.08 kcal Atomic # 7 Polarization: -135.06 SS G_CDS: -11.41 Total: -146.47 kcal Atomic # 8 Polarization: -55.15 SS G_CDS: -1.27 Total: -56.42 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Total: -74.94 -3.66 -78.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725495815.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.510 kcal (2) G-P(sol) polarization free energy of solvation -74.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds