Wall clock time and date at job start Sat Apr 11 2020 05:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38632 * 120.46907 * 2 1 4 4 C 1.38583 * 118.49060 * 179.97438 * 3 2 1 5 5 C 1.38608 * 119.34634 * 359.97438 * 4 3 2 6 6 N 1.31489 * 120.90246 * 0.02562 * 5 4 3 7 7 C 1.32750 * 121.64424 * 359.68857 * 6 5 4 8 8 C 1.48167 * 119.71950 * 180.30831 * 7 6 5 9 9 O 1.21515 * 119.99208 * 186.06305 * 8 7 6 10 10 N 1.34777 * 120.00607 * 6.06453 * 8 7 6 11 11 C 1.46492 * 120.00137 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.47020 * 180.02562 * 11 10 8 13 13 C 1.38233 * 119.99588 * 269.72665 * 12 11 10 14 14 C 1.38240 * 119.99656 * 179.74866 * 13 12 11 15 15 C 1.38238 * 119.99985 * 0.52152 * 14 13 12 16 16 C 1.50694 * 120.00252 * 179.77238 * 15 14 13 17 17 C 1.53007 * 109.47270 * 269.98322 * 16 15 14 18 18 N 1.46498 * 109.47215 * 179.97438 * 17 16 15 19 19 C 1.36940 * 119.99759 * 179.97438 * 18 17 16 20 20 H 1.08000 * 120.00229 * 0.02562 * 19 18 17 21 21 C 1.38812 * 119.99670 * 180.02562 * 19 18 17 22 22 N 1.31619 * 120.00098 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99850 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46875 * 89.99824 * 23 21 19 25 25 H 1.48497 * 109.46689 * 209.99850 * 23 21 19 26 26 H 1.48494 * 109.47016 * 329.99870 * 23 21 19 27 27 C 1.38238 * 119.99798 * 359.75397 * 15 14 13 28 28 C 1.38230 * 120.00166 * 90.00246 * 12 11 10 29 29 H 1.09000 * 109.47284 * 96.73564 * 1 2 3 30 30 H 1.09000 * 109.46720 * 336.73592 * 1 2 3 31 31 H 1.09001 * 109.46657 * 216.73526 * 1 2 3 32 32 H 1.08001 * 120.75826 * 359.97438 * 3 2 1 33 33 H 1.07999 * 120.32654 * 179.97438 * 4 3 2 34 34 H 1.08003 * 119.54302 * 180.02562 * 5 4 3 35 35 H 0.96998 * 119.99718 * 359.97438 * 10 8 7 36 36 H 1.09004 * 109.47442 * 299.99774 * 11 10 8 37 37 H 1.08996 * 109.47369 * 59.99994 * 11 10 8 38 38 H 1.08004 * 120.00554 * 359.97438 * 13 12 11 39 39 H 1.07997 * 120.00109 * 180.29654 * 14 13 12 40 40 H 1.09003 * 109.46741 * 29.97648 * 16 15 14 41 41 H 1.08993 * 109.47224 * 149.98220 * 16 15 14 42 42 H 1.08998 * 109.46837 * 299.99805 * 17 16 15 43 43 H 1.09002 * 109.46954 * 59.99871 * 17 16 15 44 44 H 0.96995 * 120.00084 * 0.02562 * 18 17 16 45 45 H 0.97000 * 120.00056 * 180.02562 * 22 21 19 46 46 H 1.07994 * 119.99754 * 179.97438 * 27 15 14 47 47 H 1.08002 * 119.99909 * 0.02562 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1949 0.0000 4 6 3.5950 1.1470 0.0005 5 6 4.2322 -0.0839 0.0016 6 7 3.5407 -1.2023 0.0016 7 6 2.2132 -1.2003 0.0067 8 6 1.4768 -2.4860 0.0134 9 8 0.2663 -2.4932 -0.0930 10 7 2.1493 -3.6473 0.1376 11 6 1.4212 -4.9184 0.1436 12 6 2.3979 -6.0562 0.2941 13 6 2.9476 -6.6481 -0.8276 14 6 3.8475 -7.6883 -0.6895 15 6 4.1895 -8.1436 0.5701 16 6 5.1666 -9.2810 0.7206 17 6 4.4066 -10.6089 0.7272 18 7 5.3566 -11.7146 0.8729 19 6 4.9037 -13.0065 0.9053 20 1 3.8463 -13.2104 0.8229 21 6 5.8038 -14.0541 1.0439 22 7 7.0925 -13.8057 1.1437 23 14 5.1862 -15.8166 1.0872 24 1 5.1465 -16.3612 -0.2937 25 1 6.0999 -16.6408 1.9184 26 1 3.8214 -15.8485 1.6714 27 6 3.6354 -7.5554 1.6917 28 6 2.7398 -6.5116 1.5537 29 1 -0.3634 -0.1205 -1.0206 30 1 -0.3633 0.9441 0.4059 31 1 -0.3633 -0.8236 0.6147 32 1 1.6902 2.1415 -0.0004 33 1 4.1722 2.0599 0.0001 34 1 5.3115 -0.1249 0.0025 35 1 3.1156 -3.6415 0.2222 36 1 0.7185 -4.9308 0.9769 37 1 0.8755 -5.0291 -0.7934 38 1 2.6768 -6.2955 -1.8119 39 1 4.2807 -8.1476 -1.5657 40 1 5.8694 -9.2688 -0.1125 41 1 5.7120 -9.1698 1.6578 42 1 3.7038 -10.6211 1.5603 43 1 3.8612 -10.7200 -0.2100 44 1 6.3062 -11.5315 0.9472 45 1 7.7215 -14.5378 1.2402 46 1 3.9023 -7.9115 2.6757 47 1 2.3066 -6.0523 2.4299 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731705773.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:42 Heat of formation + Delta-G solvation = 28.673057 kcal Electronic energy + Delta-G solvation = -26785.154979 eV Core-core repulsion = 22932.630564 eV Total energy + Delta-G solvation = -3852.524414 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.18176 -39.74818 -38.99751 -35.92051 -34.90451 -33.90254 -32.88100 -32.40470 -30.90834 -30.84871 -28.73582 -27.71830 -25.92242 -24.66234 -23.43127 -22.70158 -22.60965 -21.57705 -21.12977 -20.45412 -18.60109 -17.27513 -17.14627 -16.37143 -16.08795 -15.85979 -15.72691 -15.40157 -15.16756 -14.74719 -14.62277 -14.26937 -13.86502 -13.63903 -13.59523 -13.52637 -13.32402 -13.25567 -13.12267 -12.83408 -12.60706 -12.50735 -12.38475 -12.30822 -11.19989 -11.17010 -11.06662 -10.87185 -10.67755 -10.57923 -10.47500 -10.31501 -10.06316 -9.86403 -9.70672 -9.58930 -9.23428 -8.90622 -8.84032 -8.53418 -6.91551 -5.75553 -3.04431 0.19116 0.69831 1.22217 1.44603 2.37465 2.85734 3.39433 3.44840 3.49781 3.51671 3.69521 3.86783 4.26574 4.30089 4.43360 4.44490 4.52789 4.61013 4.78471 4.87538 5.00905 5.05488 5.06978 5.15489 5.21369 5.37081 5.43138 5.51641 5.53427 5.54707 5.63525 5.67142 5.79639 5.83768 5.88871 5.93455 6.07951 6.11621 6.20490 6.22605 6.30060 6.48240 6.52805 6.64082 6.83352 6.95594 7.02815 7.08553 7.37481 7.71445 7.85814 8.43378 9.54454 10.11957 10.46938 11.47381 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.030504 B = 0.001534 C = 0.001486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.696915 B =18247.374928 C =18840.332027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.072 4.072 3 C -0.088 4.088 4 C -0.145 4.145 5 C 0.091 3.909 6 N -0.454 5.454 7 C 0.071 3.929 8 C 0.569 3.431 9 O -0.530 6.530 10 N -0.704 5.704 11 C 0.164 3.836 12 C -0.128 4.128 13 C -0.097 4.097 14 C -0.118 4.118 15 C -0.051 4.051 16 C -0.094 4.094 17 C 0.161 3.839 18 N -0.734 5.734 19 C -0.240 4.240 20 H 0.070 0.930 21 C -0.014 4.014 22 N -0.934 5.934 23 Si 0.908 3.092 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 C -0.118 4.118 28 C -0.097 4.097 29 H 0.079 0.921 30 H 0.060 0.940 31 H 0.100 0.900 32 H 0.141 0.859 33 H 0.141 0.859 34 H 0.164 0.836 35 H 0.413 0.587 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.120 0.880 39 H 0.125 0.875 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.020 0.980 43 H 0.020 0.980 44 H 0.384 0.616 45 H 0.255 0.745 46 H 0.125 0.875 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.266 34.449 -2.379 35.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.075 4.075 3 C -0.114 4.114 4 C -0.165 4.165 5 C -0.070 4.070 6 N -0.165 5.165 7 C -0.067 4.067 8 C 0.354 3.646 9 O -0.407 6.407 10 N -0.355 5.355 11 C 0.042 3.958 12 C -0.128 4.128 13 C -0.115 4.115 14 C -0.136 4.136 15 C -0.052 4.052 16 C -0.132 4.132 17 C 0.033 3.967 18 N -0.379 5.379 19 C -0.371 4.371 20 H 0.088 0.912 21 C -0.210 4.210 22 N -0.583 5.583 23 Si 0.739 3.261 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.207 1.207 27 C -0.136 4.136 28 C -0.116 4.116 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.118 0.882 32 H 0.159 0.841 33 H 0.159 0.841 34 H 0.181 0.819 35 H 0.249 0.751 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.138 0.862 39 H 0.143 0.857 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.038 0.962 43 H 0.038 0.962 44 H 0.217 0.783 45 H 0.065 0.935 46 H 0.143 0.857 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.849 33.428 -2.450 34.935 hybrid contribution 0.280 -0.085 0.055 0.298 sum -9.569 33.343 -2.395 34.772 Atomic orbital electron populations 1.21082 0.88884 1.03460 1.04090 1.20971 0.98501 0.92361 0.95699 1.21587 0.94200 0.98163 0.97429 1.22409 0.95302 0.99949 0.98822 1.22806 1.00590 0.87246 0.96308 1.67542 1.07035 1.32126 1.09797 1.20986 0.89910 0.93555 1.02272 1.17879 0.86558 0.83090 0.77036 1.90744 1.13103 1.86707 1.50130 1.45997 1.11934 1.04954 1.72647 1.20223 0.92755 0.79833 1.03021 1.19671 1.00585 0.98681 0.93866 1.21009 0.96554 0.96111 0.97875 1.21118 0.98259 0.96920 0.97320 1.20081 0.96440 0.95691 0.92987 1.20872 0.96565 0.92729 1.03045 1.20589 0.92485 0.85650 0.97944 1.42372 1.05484 1.01368 1.88629 1.19247 0.92588 0.83205 1.42053 0.91159 1.24747 0.95345 0.97990 1.02950 1.69662 1.00531 1.30862 1.57222 0.86173 0.77597 0.84895 0.77451 1.21700 1.21742 1.20747 1.21113 0.97411 0.96300 0.98804 1.21002 0.97467 0.96720 0.96410 0.90264 0.92130 0.88167 0.84080 0.84122 0.81915 0.75089 0.90461 0.90452 0.86174 0.85707 0.90781 0.90787 0.96240 0.96242 0.78280 0.93521 0.85713 0.86194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 8.75 36.01 0.32 -0.57 16 2 C -0.07 -0.59 5.93 -104.09 -0.62 -1.21 16 3 C -0.09 -0.50 9.83 -39.31 -0.39 -0.89 16 4 C -0.14 -0.71 10.12 -39.32 -0.40 -1.11 16 5 C 0.09 0.58 11.18 -17.56 -0.20 0.38 16 6 N -0.45 -4.13 9.56 -9.80 -0.09 -4.22 16 7 C 0.07 0.69 6.75 -83.01 -0.56 0.13 16 8 C 0.57 6.22 7.75 -12.18 -0.09 6.13 16 9 O -0.53 -6.69 13.30 5.35 0.07 -6.62 16 10 N -0.70 -6.94 5.54 -62.33 -0.35 -7.28 16 11 C 0.16 1.60 5.80 -5.20 -0.03 1.57 16 12 C -0.13 -1.36 5.25 -104.62 -0.55 -1.91 16 13 C -0.10 -1.09 9.70 -39.58 -0.38 -1.47 16 14 C -0.12 -1.51 9.70 -39.58 -0.38 -1.90 16 15 C -0.05 -0.72 5.13 -104.62 -0.54 -1.26 16 16 C -0.09 -1.54 5.46 -27.88 -0.15 -1.70 16 17 C 0.16 3.31 6.24 -4.04 -0.03 3.29 16 18 N -0.73 -18.99 5.60 -59.91 -0.34 -19.33 16 19 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 20 H 0.07 1.96 7.83 -52.49 -0.41 1.54 16 21 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 22 N -0.93 -28.51 13.06 55.49 0.72 -27.79 16 23 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 27 C -0.12 -1.51 9.70 -39.58 -0.38 -1.89 16 28 C -0.10 -1.09 9.70 -39.59 -0.38 -1.47 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.32 8.05 -51.93 -0.42 -0.10 16 31 H 0.10 0.94 5.83 -51.93 -0.30 0.64 16 32 H 0.14 0.44 8.06 -52.49 -0.42 0.01 16 33 H 0.14 0.27 8.06 -52.49 -0.42 -0.15 16 34 H 0.16 0.61 8.06 -52.48 -0.42 0.18 16 35 H 0.41 3.90 7.81 -40.82 -0.32 3.58 16 36 H 0.08 0.75 8.09 -51.93 -0.42 0.33 16 37 H 0.08 0.76 8.08 -51.93 -0.42 0.34 16 38 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 39 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 40 H 0.07 1.20 8.09 -51.93 -0.42 0.78 16 41 H 0.07 1.20 8.08 -51.93 -0.42 0.78 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.38 10.31 7.67 -40.82 -0.31 10.00 16 45 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 46 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 47 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 399.09 15.07 6.01 6.01 Total: -1.00 -33.43 399.09 -10.81 -44.24 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -6.81 Total: 8.75 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -5.01 Total: -11.39 kcal Atomic # 7 Polarization: -58.57 SS G_CDS: -0.05 Total: -58.62 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: 0.07 Total: -6.62 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.43 -10.81 -44.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731705773.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.915 kcal (2) G-P(sol) polarization free energy of solvation -33.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds