Wall clock time and date at job start Sat Apr 11 2020 05:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.33222 * 126.01485 * 2 1 4 4 C 1.31536 * 109.76009 * 180.11693 * 3 2 1 5 5 O 1.35203 * 125.49785 * 179.88678 * 4 3 2 6 6 N 1.34946 * 109.01397 * 359.62048 * 4 3 2 7 7 H 0.97002 * 126.55213 * 180.20819 * 6 4 3 8 8 C 1.36717 * 126.01923 * 179.69664 * 2 1 3 9 9 C 1.46379 * 126.82304 * 0.02562 * 8 2 1 10 10 O 1.21730 * 120.00152 * 0.02562 * 9 8 2 11 11 N 1.34780 * 119.99633 * 180.02562 * 9 8 2 12 12 C 1.46500 * 119.99669 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.47342 * 325.00061 * 12 11 9 14 14 C 1.52998 * 109.47480 * 85.00298 * 12 11 9 15 15 C 1.53005 * 109.46927 * 204.99791 * 12 11 9 16 16 N 1.46901 * 109.46749 * 55.00017 * 15 12 11 17 17 C 1.46901 * 110.99995 * 66.04797 * 16 15 12 18 18 C 1.46905 * 110.99762 * 189.99856 * 16 15 12 19 19 C 1.50694 * 109.47036 * 170.00205 * 18 16 15 20 20 O 1.21297 * 120.00220 * 359.97438 * 19 18 16 21 21 N 1.34774 * 120.00359 * 180.02562 * 19 18 16 22 22 C 1.37104 * 120.00485 * 180.02562 * 21 19 18 23 23 H 1.07994 * 119.99698 * 359.97438 * 22 21 19 24 24 C 1.38955 * 119.99894 * 179.97438 * 22 21 19 25 25 N 1.31404 * 119.99468 * 179.97438 * 24 22 21 26 26 Si 1.86794 * 120.00102 * 359.97438 * 24 22 21 27 27 H 1.48504 * 109.47157 * 89.99930 * 26 24 22 28 28 H 1.48502 * 109.47213 * 210.00061 * 26 24 22 29 29 H 1.48501 * 109.47429 * 329.99794 * 26 24 22 30 30 H 1.09002 * 109.46664 * 270.30576 * 1 2 3 31 31 H 1.09001 * 109.46971 * 30.30927 * 1 2 3 32 32 H 1.09000 * 109.46903 * 150.30489 * 1 2 3 33 33 H 0.96700 * 114.00205 * 269.69423 * 5 4 3 34 34 H 0.97003 * 119.99902 * 359.97438 * 11 9 8 35 35 H 1.08995 * 109.47409 * 180.02562 * 14 12 11 36 36 H 1.09001 * 109.46638 * 300.00013 * 14 12 11 37 37 H 1.08997 * 109.47036 * 59.99071 * 14 12 11 38 38 H 1.08998 * 109.47236 * 174.99852 * 15 12 11 39 39 H 1.08995 * 109.47392 * 295.00293 * 15 12 11 40 40 H 1.09004 * 109.47400 * 59.99936 * 17 16 15 41 41 H 1.08998 * 109.47284 * 179.97438 * 17 16 15 42 42 H 1.08995 * 109.47224 * 299.99470 * 17 16 15 43 43 H 1.09001 * 109.47069 * 289.99741 * 18 16 15 44 44 H 1.08993 * 109.46985 * 50.00195 * 18 16 15 45 45 H 0.97005 * 120.00049 * 359.97438 * 21 19 18 46 46 H 0.97002 * 120.00050 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2904 1.0776 0.0000 4 6 3.5532 0.7094 -0.0025 5 8 4.6150 1.5464 -0.0054 6 7 3.6182 -0.6385 0.0042 7 1 4.4243 -1.1780 0.0070 8 6 2.3110 -1.1058 0.0059 9 6 1.8792 -2.5044 0.0127 10 8 0.6924 -2.7750 0.0132 11 7 2.7958 -3.4926 0.0186 12 6 2.3636 -4.8924 0.0249 13 1 1.4514 -4.9884 0.6138 14 6 2.0947 -5.3497 -1.4102 15 6 3.4617 -5.7624 0.6399 16 7 3.8040 -5.2489 1.9731 17 6 2.6759 -5.4016 2.9016 18 6 5.0093 -5.9055 2.4966 19 6 5.4701 -5.1913 3.7410 20 8 4.8551 -4.2296 4.1512 21 7 6.5660 -5.6204 4.3976 22 6 6.9849 -4.9710 5.5301 23 1 6.4369 -4.1153 5.8958 24 6 8.1145 -5.4139 6.2073 25 7 8.5162 -4.7911 7.2925 26 14 9.0619 -6.8944 5.5752 27 1 10.1119 -6.4424 4.6273 28 1 9.6967 -7.6004 6.7172 29 1 8.1305 -7.8177 4.8786 30 1 -0.3633 0.0055 1.0277 31 1 -0.3633 0.8872 -0.5186 32 1 -0.3633 -0.8927 -0.5091 33 1 4.9249 1.7856 -0.8897 34 1 3.7415 -3.2769 0.0178 35 1 1.7727 -6.3910 -1.4054 36 1 1.3124 -4.7299 -1.8484 37 1 3.0068 -5.2536 -1.9991 38 1 3.1062 -6.7891 0.7263 39 1 4.3456 -5.7363 0.0027 40 1 2.4177 -6.4570 2.9893 41 1 2.9564 -5.0141 3.8810 42 1 1.8167 -4.8476 2.5238 43 1 4.7820 -6.9441 2.7369 44 1 5.7976 -5.8706 1.7447 45 1 7.0581 -6.3893 4.0694 46 1 9.3046 -5.1004 7.7655 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733042486.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:08 Heat of formation + Delta-G solvation = -36.883018 kcal Electronic energy + Delta-G solvation = -29838.980416 eV Core-core repulsion = 25572.764014 eV Total energy + Delta-G solvation = -4266.216402 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.43082 -39.80052 -38.79705 -37.70198 -37.08122 -34.95820 -33.93644 -33.46589 -31.74166 -31.49398 -30.53322 -28.27775 -27.16065 -27.05263 -24.84798 -23.50578 -22.60593 -21.72045 -20.50324 -20.17940 -19.55666 -19.40340 -18.32154 -18.04822 -16.60251 -16.45702 -16.21288 -15.80495 -15.47221 -15.05478 -14.91656 -14.83675 -14.36821 -14.14776 -13.95621 -13.59525 -13.38671 -13.27442 -12.97090 -12.75403 -12.69443 -12.51101 -12.47262 -12.25215 -12.18721 -12.07616 -11.87783 -11.56670 -11.42561 -11.09138 -10.88039 -10.65499 -10.53812 -10.25714 -10.03217 -9.98814 -9.59929 -9.25523 -8.66250 -8.52920 -8.24354 -8.08021 -6.36328 -3.88125 1.00467 2.19497 2.48034 2.96556 2.97154 3.00820 3.09925 3.21018 3.61879 3.66308 3.78588 4.04611 4.54349 4.58023 4.68997 4.78324 4.91288 5.00922 5.07714 5.16084 5.27021 5.34116 5.38042 5.43694 5.48191 5.56095 5.70919 5.76236 5.77221 5.80000 5.82751 5.88018 5.88905 5.95247 6.27844 6.36024 6.44195 6.46956 7.03150 7.16600 7.24649 7.38831 7.52498 7.62690 8.05600 8.09015 8.54234 8.89843 9.36585 9.77127 10.76758 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011446 B = 0.002912 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.745175 B = 9614.049840 C =11168.340641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.111 3.889 3 N -0.490 5.490 4 C 0.413 3.587 5 O -0.439 6.439 6 N -0.551 5.551 7 H 0.424 0.576 8 C -0.080 4.080 9 C 0.601 3.399 10 O -0.529 6.529 11 N -0.704 5.704 12 C 0.149 3.851 13 H 0.092 0.908 14 C -0.162 4.162 15 C 0.041 3.959 16 N -0.516 5.516 17 C 0.020 3.980 18 C 0.042 3.958 19 C 0.451 3.549 20 O -0.558 6.558 21 N -0.590 5.590 22 C -0.306 4.306 23 H 0.119 0.881 24 C 0.042 3.958 25 N -0.880 5.880 26 Si 0.880 3.120 27 H -0.271 1.271 28 H -0.276 1.276 29 H -0.270 1.270 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.405 0.595 34 H 0.398 0.602 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.057 0.943 38 H 0.050 0.950 39 H 0.078 0.922 40 H 0.016 0.984 41 H 0.096 0.904 42 H 0.063 0.937 43 H 0.049 0.951 44 H 0.088 0.912 45 H 0.370 0.630 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.899 0.224 -21.766 23.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.024 4.024 3 N -0.222 5.222 4 C 0.112 3.888 5 O -0.240 6.240 6 N -0.169 5.169 7 H 0.264 0.736 8 C -0.195 4.195 9 C 0.388 3.612 10 O -0.406 6.406 11 N -0.354 5.354 12 C 0.044 3.956 13 H 0.110 0.890 14 C -0.221 4.221 15 C -0.088 4.088 16 N -0.240 5.240 17 C -0.128 4.128 18 C -0.090 4.090 19 C 0.236 3.764 20 O -0.440 6.440 21 N -0.230 5.230 22 C -0.434 4.434 23 H 0.137 0.863 24 C -0.161 4.161 25 N -0.520 5.520 26 Si 0.706 3.294 27 H -0.196 1.196 28 H -0.202 1.202 29 H -0.196 1.196 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.110 0.890 33 H 0.263 0.737 34 H 0.232 0.768 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.097 0.903 40 H 0.035 0.965 41 H 0.115 0.885 42 H 0.082 0.918 43 H 0.067 0.933 44 H 0.106 0.894 45 H 0.202 0.798 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.143 2.027 -20.722 23.160 hybrid contribution 2.481 -2.928 -0.610 3.886 sum -7.662 -0.901 -21.332 22.684 Atomic orbital electron populations 1.20333 0.86004 1.03698 1.03445 1.20927 0.96848 0.85917 0.98683 1.70275 0.98597 1.30361 1.22922 1.20160 0.87397 0.78715 1.02575 1.84887 1.43283 1.61571 1.34216 1.43711 1.08898 1.07935 1.56368 0.73635 1.20783 0.83000 0.95278 1.20442 1.16594 0.85880 0.82395 0.76338 1.90816 1.15853 1.82875 1.51099 1.45672 1.09384 1.05766 1.74585 1.20985 0.98337 0.79886 0.96410 0.88958 1.22158 1.02203 1.01767 0.95936 1.22521 0.98365 0.96456 0.91440 1.61583 1.04247 1.56580 1.01597 1.22585 0.92713 0.98392 0.99118 1.21915 0.93494 0.96093 0.97450 1.19625 0.83234 0.87323 0.86206 1.90548 1.56140 1.28697 1.68574 1.42218 1.25640 1.29279 1.25843 1.19421 1.10277 1.13311 1.00421 0.86298 1.25043 0.97052 0.98051 0.95988 1.69619 1.25089 1.40210 1.17068 0.86673 0.80669 0.82691 0.79322 1.19633 1.20161 1.19570 0.90390 0.90998 0.88989 0.73686 0.76764 0.91467 0.91642 0.92424 0.93231 0.90320 0.96520 0.88532 0.91833 0.93262 0.89399 0.79777 0.91565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 9.87 36.01 0.36 -0.51 16 2 C 0.11 1.47 7.14 -82.54 -0.59 0.88 16 3 N -0.49 -6.74 11.22 -10.83 -0.12 -6.86 16 4 C 0.41 4.83 9.43 -89.59 -0.84 3.98 16 5 O -0.44 -4.04 13.62 -17.30 -0.24 -4.27 16 6 N -0.55 -5.78 6.12 -10.91 -0.07 -5.84 16 7 H 0.42 3.37 8.32 -40.82 -0.34 3.03 16 8 C -0.08 -1.00 7.08 -81.98 -0.58 -1.58 16 9 C 0.60 7.69 7.74 -12.98 -0.10 7.59 16 10 O -0.53 -7.86 14.46 5.16 0.07 -7.79 16 11 N -0.70 -7.49 4.80 -55.20 -0.26 -7.76 16 12 C 0.15 1.48 2.35 -67.93 -0.16 1.32 16 13 H 0.09 1.10 6.23 -51.93 -0.32 0.77 16 14 C -0.16 -1.27 9.48 37.16 0.35 -0.92 16 15 C 0.04 0.40 4.52 -3.82 -0.02 0.39 16 16 N -0.52 -7.23 4.22 -244.37 -1.03 -8.26 16 17 C 0.02 0.30 8.96 60.07 0.54 0.84 16 18 C 0.04 0.63 5.45 -4.98 -0.03 0.61 16 19 C 0.45 9.68 7.47 -10.99 -0.08 9.60 16 20 O -0.56 -14.29 13.91 5.54 0.08 -14.21 16 21 N -0.59 -13.51 5.09 -10.96 -0.06 -13.57 16 22 C -0.31 -8.45 10.16 -14.93 -0.15 -8.61 16 23 H 0.12 3.79 7.39 -52.49 -0.39 3.41 16 24 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 25 N -0.88 -25.42 13.96 55.50 0.77 -24.64 16 26 Si 0.88 18.89 27.74 -169.99 -4.71 14.17 16 27 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 28 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 29 H -0.27 -5.25 6.52 56.52 0.37 -4.88 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.09 1.04 6.46 -51.93 -0.34 0.71 16 33 H 0.41 1.30 9.06 45.56 0.41 1.71 16 34 H 0.40 3.77 7.84 -40.82 -0.32 3.45 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.05 0.45 8.12 -51.93 -0.42 0.02 16 39 H 0.08 0.65 7.93 -51.93 -0.41 0.24 16 40 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 41 H 0.10 1.86 5.82 -51.93 -0.30 1.56 16 42 H 0.06 0.93 6.58 -51.93 -0.34 0.59 16 43 H 0.05 0.67 8.12 -51.93 -0.42 0.25 16 44 H 0.09 1.11 7.93 -51.93 -0.41 0.69 16 45 H 0.37 7.39 5.76 -40.82 -0.24 7.16 16 46 H 0.27 7.29 8.31 -40.82 -0.34 6.96 16 LS Contribution 383.75 15.07 5.78 5.78 Total: -1.00 -36.43 383.75 -6.73 -43.16 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: -5.54 Total: 15.48 kcal Atomic # 6 Polarization: 16.01 SS G_CDS: -1.40 Total: 14.61 kcal Atomic # 7 Polarization: -66.17 SS G_CDS: -0.77 Total: -66.94 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: -0.08 Total: -26.27 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -4.71 Total: 14.17 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.43 -6.73 -43.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733042486.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.279 kcal (2) G-P(sol) polarization free energy of solvation -36.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds