Wall clock time and date at job start Sat Apr 11 2020 05:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.33222 * 126.01485 * 2 1 4 4 C 1.31536 * 109.76009 * 180.11693 * 3 2 1 5 5 O 1.35203 * 125.49785 * 179.88678 * 4 3 2 6 6 N 1.34946 * 109.01397 * 359.62048 * 4 3 2 7 7 H 0.97002 * 126.55213 * 180.20819 * 6 4 3 8 8 C 1.36717 * 126.01923 * 179.69664 * 2 1 3 9 9 C 1.46379 * 126.82304 * 0.02562 * 8 2 1 10 10 O 1.21730 * 120.00152 * 0.02562 * 9 8 2 11 11 N 1.34780 * 119.99633 * 180.02562 * 9 8 2 12 12 C 1.46500 * 119.99669 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.47342 * 325.00061 * 12 11 9 14 14 C 1.52998 * 109.47480 * 85.00298 * 12 11 9 15 15 C 1.53005 * 109.46927 * 204.99791 * 12 11 9 16 16 N 1.46901 * 109.46749 * 55.00017 * 15 12 11 17 17 C 1.46901 * 110.99995 * 66.04797 * 16 15 12 18 18 C 1.46905 * 110.99762 * 189.99856 * 16 15 12 19 19 C 1.50694 * 109.47036 * 170.00205 * 18 16 15 20 20 O 1.21297 * 120.00220 * 359.97438 * 19 18 16 21 21 N 1.34774 * 120.00359 * 180.02562 * 19 18 16 22 22 C 1.37104 * 120.00485 * 180.02562 * 21 19 18 23 23 H 1.07994 * 119.99698 * 359.97438 * 22 21 19 24 24 C 1.38955 * 119.99894 * 179.97438 * 22 21 19 25 25 N 1.31404 * 119.99468 * 179.97438 * 24 22 21 26 26 Si 1.86794 * 120.00102 * 359.97438 * 24 22 21 27 27 H 1.48504 * 109.47157 * 89.99930 * 26 24 22 28 28 H 1.48502 * 109.47213 * 210.00061 * 26 24 22 29 29 H 1.48501 * 109.47429 * 329.99794 * 26 24 22 30 30 H 1.09002 * 109.46664 * 270.30576 * 1 2 3 31 31 H 1.09001 * 109.46971 * 30.30927 * 1 2 3 32 32 H 1.09000 * 109.46903 * 150.30489 * 1 2 3 33 33 H 0.96700 * 114.00205 * 269.69423 * 5 4 3 34 34 H 0.97003 * 119.99902 * 359.97438 * 11 9 8 35 35 H 1.08995 * 109.47409 * 180.02562 * 14 12 11 36 36 H 1.09001 * 109.46638 * 300.00013 * 14 12 11 37 37 H 1.08997 * 109.47036 * 59.99071 * 14 12 11 38 38 H 1.08998 * 109.47236 * 174.99852 * 15 12 11 39 39 H 1.08995 * 109.47392 * 295.00293 * 15 12 11 40 40 H 1.09004 * 109.47400 * 59.99936 * 17 16 15 41 41 H 1.08998 * 109.47284 * 179.97438 * 17 16 15 42 42 H 1.08995 * 109.47224 * 299.99470 * 17 16 15 43 43 H 1.09001 * 109.47069 * 289.99741 * 18 16 15 44 44 H 1.08993 * 109.46985 * 50.00195 * 18 16 15 45 45 H 0.97005 * 120.00049 * 359.97438 * 21 19 18 46 46 H 0.97002 * 120.00050 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2904 1.0776 0.0000 4 6 3.5532 0.7094 -0.0025 5 8 4.6150 1.5464 -0.0054 6 7 3.6182 -0.6385 0.0042 7 1 4.4243 -1.1780 0.0070 8 6 2.3110 -1.1058 0.0059 9 6 1.8792 -2.5044 0.0127 10 8 0.6924 -2.7750 0.0132 11 7 2.7958 -3.4926 0.0186 12 6 2.3636 -4.8924 0.0249 13 1 1.4514 -4.9884 0.6138 14 6 2.0947 -5.3497 -1.4102 15 6 3.4617 -5.7624 0.6399 16 7 3.8040 -5.2489 1.9731 17 6 2.6759 -5.4016 2.9016 18 6 5.0093 -5.9055 2.4966 19 6 5.4701 -5.1913 3.7410 20 8 4.8551 -4.2296 4.1512 21 7 6.5660 -5.6204 4.3976 22 6 6.9849 -4.9710 5.5301 23 1 6.4369 -4.1153 5.8958 24 6 8.1145 -5.4139 6.2073 25 7 8.5162 -4.7911 7.2925 26 14 9.0619 -6.8944 5.5752 27 1 10.1119 -6.4424 4.6273 28 1 9.6967 -7.6004 6.7172 29 1 8.1305 -7.8177 4.8786 30 1 -0.3633 0.0055 1.0277 31 1 -0.3633 0.8872 -0.5186 32 1 -0.3633 -0.8927 -0.5091 33 1 4.9249 1.7856 -0.8897 34 1 3.7415 -3.2769 0.0178 35 1 1.7727 -6.3910 -1.4054 36 1 1.3124 -4.7299 -1.8484 37 1 3.0068 -5.2536 -1.9991 38 1 3.1062 -6.7891 0.7263 39 1 4.3456 -5.7363 0.0027 40 1 2.4177 -6.4570 2.9893 41 1 2.9564 -5.0141 3.8810 42 1 1.8167 -4.8476 2.5238 43 1 4.7820 -6.9441 2.7369 44 1 5.7976 -5.8706 1.7447 45 1 7.0581 -6.3893 4.0694 46 1 9.3046 -5.1004 7.7655 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733042486.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:07 Heat of formation + Delta-G solvation = -72.337324 kcal Electronic energy + Delta-G solvation = -29840.517830 eV Core-core repulsion = 25572.764014 eV Total energy + Delta-G solvation = -4267.753816 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.34406 -40.82145 -40.30569 -38.56613 -38.19307 -36.19557 -35.64261 -34.39979 -33.74687 -32.39437 -31.42826 -29.63237 -28.05670 -28.00615 -26.55974 -24.50371 -23.68049 -22.69712 -21.38104 -21.22936 -21.10190 -20.39966 -20.14898 -18.92838 -17.85942 -17.41175 -17.28543 -16.81033 -16.76268 -16.62724 -16.09605 -15.85142 -15.56744 -15.36284 -15.09364 -14.86284 -14.74198 -14.35716 -14.25199 -14.09044 -13.63511 -13.59866 -13.44385 -13.29857 -13.17592 -13.04120 -12.88313 -12.75409 -12.67171 -12.44466 -12.39648 -11.98419 -11.71964 -11.49721 -11.46197 -11.19347 -10.97246 -10.36357 -10.22608 -10.14080 -9.45021 -9.22843 -8.40891 -6.01755 0.08310 1.29634 1.35542 1.35705 1.44599 1.54855 1.98933 2.08864 2.23237 2.25479 2.61192 2.82003 3.15100 3.26110 3.71120 3.76673 3.92566 4.07569 4.10091 4.20413 4.33124 4.41161 4.45602 4.47237 4.54906 4.58433 4.70859 4.78121 4.81906 4.83233 4.92927 4.98687 5.06192 5.18952 5.33155 5.43798 5.51314 5.53546 5.78700 5.89126 5.99633 6.16289 6.40951 6.60876 6.65597 6.70158 6.90352 7.13051 7.41964 8.00708 8.77084 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011446 B = 0.002912 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.745175 B = 9614.049840 C =11168.340641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.093 3.907 3 N -0.520 5.520 4 C 0.418 3.582 5 O -0.443 6.443 6 N -0.539 5.539 7 H 0.435 0.565 8 C -0.091 4.091 9 C 0.598 3.402 10 O -0.556 6.556 11 N -0.695 5.695 12 C 0.147 3.853 13 H 0.069 0.931 14 C -0.152 4.152 15 C 0.047 3.953 16 N -0.533 5.533 17 C 0.029 3.971 18 C 0.055 3.945 19 C 0.450 3.550 20 O -0.607 6.607 21 N -0.593 5.593 22 C -0.326 4.326 23 H 0.052 0.948 24 C -0.018 4.018 25 N -0.938 5.938 26 Si 0.967 3.033 27 H -0.255 1.255 28 H -0.279 1.279 29 H -0.229 1.229 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.432 0.568 34 H 0.405 0.595 35 H 0.084 0.916 36 H 0.047 0.953 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.108 0.892 40 H 0.037 0.963 41 H 0.048 0.952 42 H 0.061 0.939 43 H 0.078 0.922 44 H 0.129 0.871 45 H 0.389 0.611 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.419 -2.956 -25.079 26.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.042 4.042 3 N -0.252 5.252 4 C 0.116 3.884 5 O -0.248 6.248 6 N -0.159 5.159 7 H 0.277 0.723 8 C -0.207 4.207 9 C 0.385 3.615 10 O -0.436 6.436 11 N -0.345 5.345 12 C 0.042 3.958 13 H 0.088 0.912 14 C -0.211 4.211 15 C -0.081 4.081 16 N -0.258 5.258 17 C -0.119 4.119 18 C -0.076 4.076 19 C 0.238 3.762 20 O -0.491 6.491 21 N -0.235 5.235 22 C -0.455 4.455 23 H 0.070 0.930 24 C -0.216 4.216 25 N -0.579 5.579 26 Si 0.787 3.213 27 H -0.180 1.180 28 H -0.204 1.204 29 H -0.152 1.152 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.107 0.893 33 H 0.294 0.706 34 H 0.241 0.759 35 H 0.103 0.897 36 H 0.067 0.933 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.126 0.874 40 H 0.055 0.945 41 H 0.067 0.933 42 H 0.080 0.920 43 H 0.096 0.904 44 H 0.147 0.853 45 H 0.225 0.775 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.641 -1.175 -24.096 25.625 hybrid contribution 1.953 -1.777 0.435 2.676 sum -6.688 -2.952 -23.661 24.764 Atomic orbital electron populations 1.20316 0.85274 1.04140 1.03317 1.21270 0.97710 0.86239 0.98969 1.70242 0.99634 1.30996 1.24344 1.20248 0.87532 0.79266 1.01344 1.84845 1.42306 1.61002 1.36677 1.43584 1.08761 1.07718 1.55797 0.72258 1.20794 0.83698 0.95213 1.20946 1.16660 0.85798 0.82794 0.76217 1.90795 1.16956 1.83266 1.52558 1.45662 1.09416 1.05907 1.73510 1.21082 0.97656 0.79390 0.97635 0.91242 1.22069 1.02518 1.02307 0.94185 1.22619 0.99468 0.97062 0.88950 1.61477 1.03462 1.57841 1.02981 1.22345 0.93183 0.99227 0.97151 1.21860 0.94877 0.96118 0.94749 1.21009 0.81580 0.86390 0.87247 1.90548 1.57275 1.31069 1.70181 1.42036 1.26664 1.29934 1.24864 1.18964 1.10842 1.12771 1.02951 0.93030 1.26143 0.97694 1.02069 0.95670 1.69816 1.26090 1.42856 1.19111 0.85341 0.79271 0.77710 0.79010 1.17984 1.20435 1.15237 0.90752 0.89694 0.89321 0.70611 0.75936 0.89724 0.93345 0.90676 0.91043 0.87362 0.94504 0.93327 0.92024 0.90402 0.85305 0.77506 0.91242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.69 9.87 71.24 0.70 -0.99 16 2 C 0.09 2.51 7.14 41.99 0.30 2.81 16 3 N -0.52 -14.38 11.22 -301.67 -3.38 -17.76 16 4 C 0.42 9.57 9.43 179.99 1.70 11.26 16 5 O -0.44 -7.65 13.62 -84.83 -1.16 -8.81 16 6 N -0.54 -10.98 6.12 -300.14 -1.84 -12.82 16 7 H 0.44 6.41 8.32 -92.71 -0.77 5.64 16 8 C -0.09 -2.29 7.08 39.80 0.28 -2.01 16 9 C 0.60 15.22 7.74 86.36 0.67 15.89 16 10 O -0.56 -16.82 14.46 -4.44 -0.06 -16.89 16 11 N -0.70 -13.73 4.80 -446.76 -2.14 -15.87 16 12 C 0.15 2.55 2.35 44.99 0.11 2.65 16 13 H 0.07 1.56 6.23 -2.39 -0.01 1.55 16 14 C -0.15 -1.90 9.48 71.98 0.68 -1.22 16 15 C 0.05 0.70 4.52 86.30 0.39 1.09 16 16 N -0.53 -13.40 4.22 -927.05 -3.92 -17.32 16 17 C 0.03 0.86 8.96 127.69 1.14 2.01 16 18 C 0.05 1.43 5.45 85.55 0.47 1.90 16 19 C 0.45 18.97 7.47 87.66 0.66 19.63 16 20 O -0.61 -32.25 13.91 -3.08 -0.04 -32.29 16 21 N -0.59 -26.58 5.09 -306.98 -1.56 -28.14 16 22 C -0.33 -18.71 10.16 84.04 0.85 -17.86 16 23 H 0.05 3.58 7.39 -2.91 -0.02 3.55 16 24 C -0.02 -0.96 5.50 84.93 0.47 -0.49 16 25 N -0.94 -56.28 13.96 21.66 0.30 -55.98 16 26 Si 0.97 37.57 27.74 68.60 1.90 39.47 16 27 H -0.26 -9.31 7.11 99.48 0.71 -8.61 16 28 H -0.28 -10.94 7.11 99.48 0.71 -10.23 16 29 H -0.23 -7.32 6.52 99.48 0.65 -6.67 16 30 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.09 2.09 6.46 -2.39 -0.02 2.07 16 33 H 0.43 2.04 9.06 -74.06 -0.67 1.37 16 34 H 0.41 6.77 7.84 -92.71 -0.73 6.04 16 35 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.07 0.87 8.12 -2.39 -0.02 0.85 16 39 H 0.11 1.09 7.93 -2.39 -0.02 1.07 16 40 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 41 H 0.05 1.92 5.82 -2.39 -0.01 1.91 16 42 H 0.06 1.82 6.58 -2.39 -0.02 1.80 16 43 H 0.08 1.68 8.12 -2.39 -0.02 1.66 16 44 H 0.13 2.42 7.93 -2.39 -0.02 2.40 16 45 H 0.39 14.18 5.76 -92.70 -0.53 13.65 16 46 H 0.28 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -87.54 383.75 -5.17 -92.72 By element: Atomic # 1 Polarization: 40.70 SS G_CDS: -1.69 Total: 39.01 kcal Atomic # 6 Polarization: 26.26 SS G_CDS: 8.42 Total: 34.68 kcal Atomic # 7 Polarization: -135.35 SS G_CDS: -12.54 Total: -147.89 kcal Atomic # 8 Polarization: -56.72 SS G_CDS: -1.26 Total: -57.99 kcal Atomic # 14 Polarization: 37.57 SS G_CDS: 1.90 Total: 39.47 kcal Total: -87.54 -5.17 -92.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733042486.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.379 kcal (2) G-P(sol) polarization free energy of solvation -87.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds