Wall clock time and date at job start Sat Apr 11 2020 05:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46495 * 110.78061 * 2 1 4 4 C 1.34777 * 120.00030 * 303.23840 * 3 2 1 5 5 O 1.21279 * 120.00150 * 359.97438 * 4 3 2 6 6 C 1.50705 * 120.00278 * 180.02562 * 4 3 2 7 7 C 1.50700 * 109.47343 * 180.02562 * 6 4 3 8 8 C 1.36169 * 120.19183 * 265.00088 * 7 6 4 9 9 C 1.39315 * 120.87058 * 179.97438 * 8 7 6 10 10 C 1.36110 * 121.06643 * 359.97352 * 9 8 7 11 11 C 1.40556 * 119.74486 * 0.02562 * 10 9 8 12 12 N 1.33689 * 121.07886 * 179.97438 * 11 10 9 13 13 C 1.31079 * 121.32102 * 180.02562 * 12 11 10 14 14 C 1.39337 * 121.75596 * 359.97438 * 13 12 11 15 15 C 1.36578 * 119.93532 * 0.02562 * 14 13 12 16 16 C 1.40390 * 120.19215 * 84.72106 * 7 6 4 17 17 C 1.55151 * 110.71741 * 123.23736 * 2 1 3 18 18 C 1.54914 * 101.58023 * 153.86287 * 17 2 1 19 19 N 1.47420 * 104.83159 * 322.99181 * 18 17 2 20 20 C 1.36945 * 125.64792 * 204.08975 * 19 18 17 21 21 H 1.07997 * 119.99756 * 180.02562 * 20 19 18 22 22 C 1.38805 * 119.99878 * 0.02562 * 20 19 18 23 23 N 1.31624 * 120.00257 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99929 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47174 * 270.00277 * 24 22 20 26 26 H 1.48501 * 109.47062 * 30.00228 * 24 22 20 27 27 H 1.48499 * 109.46981 * 150.00382 * 24 22 20 28 28 C 1.47020 * 108.70626 * 24.35323 * 19 18 17 29 29 H 1.08995 * 109.47166 * 296.76593 * 1 2 3 30 30 H 1.09000 * 109.47069 * 56.76058 * 1 2 3 31 31 H 1.08991 * 109.47197 * 176.76236 * 1 2 3 32 32 H 0.97000 * 120.00525 * 123.23771 * 3 2 1 33 33 H 1.09004 * 109.46599 * 300.00371 * 6 4 3 34 34 H 1.08998 * 109.46874 * 60.00016 * 6 4 3 35 35 H 1.08002 * 119.56787 * 359.97438 * 8 7 6 36 36 H 1.07998 * 119.46817 * 180.02562 * 9 8 7 37 37 H 1.07990 * 120.12838 * 180.02562 * 10 9 8 38 38 H 1.08001 * 119.12779 * 179.97438 * 13 12 11 39 39 H 1.07997 * 120.03227 * 179.97438 * 14 13 12 40 40 H 1.07999 * 120.92122 * 180.02562 * 15 14 13 41 41 H 1.09002 * 111.00697 * 35.79181 * 17 2 1 42 42 H 1.08994 * 111.00548 * 271.93648 * 17 2 1 43 43 H 1.08999 * 110.37083 * 204.15142 * 18 17 2 44 44 H 1.08998 * 110.45606 * 81.87777 * 18 17 2 45 45 H 0.97001 * 119.99885 * 179.97438 * 23 22 20 46 46 H 1.09001 * 109.88406 * 118.12749 * 28 19 18 47 47 H 1.09001 * 109.88743 * 239.29401 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0498 1.3697 0.0000 4 6 1.6908 2.2267 -0.9762 5 8 0.9377 1.8639 -1.8550 6 6 2.2259 3.6355 -0.9766 7 6 1.6754 4.3817 -2.1646 8 6 2.3934 4.4563 -3.3191 9 6 1.8979 5.1419 -4.4261 10 6 0.6837 5.7557 -4.3864 11 6 -0.0873 5.7010 -3.2124 12 7 -1.2832 6.2947 -3.1438 13 6 -2.0059 6.2471 -2.0513 14 6 -1.5673 5.5780 -0.9105 15 6 -0.3546 4.9498 -0.9127 16 6 0.4167 4.9990 -2.0892 17 6 2.0789 -0.7954 1.2138 18 6 3.4633 -1.2498 0.6875 19 7 3.2445 -1.5508 -0.7390 20 6 4.0043 -2.3970 -1.5018 21 1 3.7611 -2.5508 -2.5427 22 6 5.0869 -3.0571 -0.9371 23 7 5.3829 -2.8701 0.3317 24 14 6.1229 -4.2120 -1.9774 25 1 5.5626 -5.5851 -1.8999 26 1 6.1111 -3.7515 -3.3892 27 1 7.5186 -4.2176 -1.4701 28 6 2.0793 -0.7870 -1.2087 29 1 -0.3633 0.4628 0.9175 30 1 -0.3633 0.5633 -0.8595 31 1 -0.3633 -1.0259 -0.0580 32 1 2.6524 1.6598 0.7026 33 1 1.9226 4.1396 -0.0589 34 1 3.3140 3.6108 -1.0350 35 1 3.3598 3.9777 -3.3776 36 1 2.4863 5.1864 -5.3306 37 1 0.3141 6.2826 -5.2535 38 1 -2.9669 6.7397 -2.0348 39 1 -2.1854 5.5568 -0.0251 40 1 0.0008 4.4262 -0.0375 41 1 1.4451 -1.6535 1.4375 42 1 2.1850 -0.1518 2.0870 43 1 3.7960 -2.1427 1.2169 44 1 4.1946 -0.4492 0.7985 45 1 6.1393 -3.3317 0.7264 46 1 2.3814 -0.0970 -1.9965 47 1 1.3155 -1.4687 -1.5830 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733408270.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:34 Heat of formation + Delta-G solvation = 27.424544 kcal Electronic energy + Delta-G solvation = -29367.253105 eV Core-core repulsion = 25514.674551 eV Total energy + Delta-G solvation = -3852.578554 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.98941 -41.09310 -39.04092 -37.98767 -35.71518 -35.05591 -33.67868 -32.40784 -31.51123 -31.44625 -30.36246 -28.49831 -27.55086 -25.44386 -25.14233 -24.53677 -22.97801 -22.19909 -21.26141 -20.41687 -19.09392 -18.96768 -18.07470 -17.99119 -17.86309 -17.11140 -16.69604 -16.11648 -15.63995 -15.53427 -15.47474 -15.31820 -15.06192 -14.59992 -14.55392 -14.36675 -14.08364 -14.04312 -13.84052 -13.61493 -13.30046 -13.22216 -12.89097 -12.78945 -12.77372 -12.62257 -12.52339 -12.14995 -12.06115 -12.03451 -11.96082 -11.68816 -11.54514 -11.42764 -10.75718 -10.59382 -10.45588 -9.97876 -9.69789 -9.14012 -8.89084 -7.79758 -5.23068 -0.55792 -0.09967 1.01038 1.44730 1.45899 1.54719 1.72018 1.95636 2.33921 2.47662 3.15829 3.29656 3.39458 3.46818 3.62469 3.71435 3.81505 3.88219 3.90362 4.01562 4.05470 4.14118 4.18378 4.23994 4.36081 4.50255 4.55200 4.62217 4.64417 4.67704 4.82584 4.87787 4.89934 4.91744 5.01713 5.05134 5.09771 5.11062 5.15321 5.34781 5.41192 5.42135 5.50917 5.62395 5.62615 5.72086 5.81392 5.93429 6.31043 6.68894 6.95837 7.10844 7.37533 7.76760 8.39822 9.21341 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017664 B = 0.002821 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.776905 B = 9924.489012 C =10887.148376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.173 3.827 3 N -0.703 5.703 4 C 0.514 3.486 5 O -0.567 6.567 6 C -0.100 4.100 7 C -0.048 4.048 8 C -0.121 4.121 9 C -0.096 4.096 10 C -0.115 4.115 11 C 0.098 3.902 12 N -0.505 5.505 13 C 0.122 3.878 14 C -0.173 4.173 15 C -0.065 4.065 16 C -0.103 4.103 17 C -0.127 4.127 18 C 0.155 3.845 19 N -0.623 5.623 20 C -0.243 4.243 21 H 0.067 0.933 22 C -0.059 4.059 23 N -0.942 5.942 24 Si 0.976 3.024 25 H -0.284 1.284 26 H -0.277 1.277 27 H -0.288 1.288 28 C 0.138 3.862 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.412 0.588 33 H 0.135 0.865 34 H 0.124 0.876 35 H 0.136 0.864 36 H 0.153 0.847 37 H 0.142 0.858 38 H 0.189 0.811 39 H 0.171 0.829 40 H 0.152 0.848 41 H 0.079 0.921 42 H 0.104 0.896 43 H 0.074 0.926 44 H -0.003 1.003 45 H 0.249 0.751 46 H 0.006 0.994 47 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.904 20.004 2.793 22.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.086 3.914 3 N -0.355 5.355 4 C 0.301 3.699 5 O -0.446 6.446 6 C -0.140 4.140 7 C -0.049 4.049 8 C -0.139 4.139 9 C -0.116 4.116 10 C -0.133 4.133 11 C -0.022 4.022 12 N -0.214 5.214 13 C -0.050 4.050 14 C -0.192 4.192 15 C -0.091 4.091 16 C -0.105 4.105 17 C -0.166 4.166 18 C 0.030 3.970 19 N -0.349 5.349 20 C -0.372 4.372 21 H 0.085 0.915 22 C -0.252 4.252 23 N -0.592 5.592 24 Si 0.805 3.195 25 H -0.211 1.211 26 H -0.202 1.202 27 H -0.214 1.214 28 C 0.012 3.988 29 H 0.098 0.902 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.249 0.751 33 H 0.153 0.847 34 H 0.142 0.858 35 H 0.154 0.846 36 H 0.171 0.829 37 H 0.160 0.840 38 H 0.206 0.794 39 H 0.189 0.811 40 H 0.170 0.830 41 H 0.097 0.903 42 H 0.122 0.878 43 H 0.092 0.908 44 H 0.015 0.985 45 H 0.059 0.941 46 H 0.024 0.976 47 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -11.477 20.038 1.367 23.133 hybrid contribution 1.408 -1.276 0.080 1.902 sum -10.069 18.762 1.447 21.343 Atomic orbital electron populations 1.21964 0.92411 1.02491 1.03128 1.21088 0.94093 0.81211 0.95009 1.45896 1.49739 1.10954 1.28936 1.20874 0.80479 0.87692 0.80807 1.90688 1.37410 1.79023 1.37451 1.20775 1.03550 0.90581 0.99056 1.19272 0.93185 0.96590 0.95892 1.21103 1.01166 0.98898 0.92725 1.21146 0.95586 0.95604 0.99225 1.20986 0.94479 1.00965 0.96875 1.19157 0.92354 0.96291 0.94391 1.68048 1.05450 1.19504 1.28400 1.23570 0.99432 0.94287 0.87726 1.22250 0.97155 0.98598 1.01212 1.21760 0.94399 0.95921 0.96987 1.18840 0.96034 0.99954 0.95715 1.23197 0.97412 0.99669 0.96293 1.21758 0.92367 0.98789 0.84037 1.44784 1.31517 1.50121 1.08473 1.19341 1.07040 1.17585 0.93202 0.91474 1.25517 0.99802 1.02162 0.97725 1.70006 1.30289 1.46947 1.11949 0.85113 0.77755 0.78786 0.77869 1.21117 1.20245 1.21448 1.21668 0.88957 0.92581 0.95621 0.90151 0.92149 0.91999 0.75145 0.84718 0.85760 0.84608 0.82896 0.84025 0.79448 0.81135 0.83037 0.90253 0.87772 0.90794 0.98529 0.94136 0.97633 0.96754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.12 8.44 71.98 0.61 -3.52 16 2 C 0.17 5.74 0.81 4.80 0.00 5.74 16 3 N -0.70 -19.14 5.14 -417.55 -2.15 -21.29 16 4 C 0.51 14.42 7.03 87.66 0.62 15.04 16 5 O -0.57 -20.87 13.01 -3.03 -0.04 -20.91 16 6 C -0.10 -1.97 5.24 29.10 0.15 -1.82 16 7 C -0.05 -1.16 4.38 -19.82 -0.09 -1.24 16 8 C -0.12 -2.85 9.58 22.05 0.21 -2.64 16 9 C -0.10 -2.11 9.94 22.03 0.22 -1.89 16 10 C -0.11 -2.78 9.98 22.34 0.22 -2.55 16 11 C 0.10 2.66 6.60 40.28 0.27 2.92 16 12 N -0.51 -12.87 10.34 -188.63 -1.95 -14.82 16 13 C 0.12 2.26 11.15 85.07 0.95 3.21 16 14 C -0.17 -2.78 10.03 22.15 0.22 -2.55 16 15 C -0.06 -1.28 9.36 22.50 0.21 -1.07 16 16 C -0.10 -2.60 5.74 -21.28 -0.12 -2.72 16 17 C -0.13 -4.20 6.07 31.99 0.19 -4.01 16 18 C 0.16 7.19 5.87 86.86 0.51 7.70 16 19 N -0.62 -32.52 3.39 -691.97 -2.35 -34.87 16 20 C -0.24 -14.01 10.27 84.03 0.86 -13.14 16 21 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 22 C -0.06 -3.35 5.49 84.86 0.47 -2.89 16 23 N -0.94 -54.78 10.09 21.65 0.22 -54.56 16 24 Si 0.98 45.98 29.55 68.60 2.03 48.00 16 25 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 26 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 27 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 28 C 0.14 6.22 6.19 86.73 0.54 6.75 16 29 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.06 2.00 5.97 -2.39 -0.01 1.98 16 31 H 0.06 1.80 8.07 -2.39 -0.02 1.78 16 32 H 0.41 8.85 8.49 -92.71 -0.79 8.07 16 33 H 0.14 1.70 6.73 -2.39 -0.02 1.68 16 34 H 0.12 2.04 8.04 -2.39 -0.02 2.02 16 35 H 0.14 2.85 8.05 -2.91 -0.02 2.82 16 36 H 0.15 2.45 8.06 -2.91 -0.02 2.42 16 37 H 0.14 2.97 8.06 -2.92 -0.02 2.94 16 38 H 0.19 2.02 8.06 -2.91 -0.02 2.00 16 39 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 40 H 0.15 2.30 6.57 -2.91 -0.02 2.28 16 41 H 0.08 2.61 8.05 -2.39 -0.02 2.59 16 42 H 0.10 2.62 8.07 -2.39 -0.02 2.60 16 43 H 0.07 3.96 5.87 -2.39 -0.01 3.94 16 44 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 45 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 46 H 0.01 0.28 6.90 -2.39 -0.02 0.26 16 47 H 0.01 0.68 7.77 -2.39 -0.02 0.66 16 Total: -1.00 -78.08 378.26 2.01 -76.06 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: 0.21 Total: 21.06 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: 6.04 Total: 1.32 kcal Atomic # 7 Polarization: -119.31 SS G_CDS: -6.23 Total: -125.54 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.04 Total: -20.91 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.00 kcal Total: -78.08 2.01 -76.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733408270.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.489 kcal (2) G-P(sol) polarization free energy of solvation -78.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds