Wall clock time and date at job start Sat Apr 11 2020 05:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47168 * 10.26207 * 3 2 1 5 5 H 1.08998 * 109.47192 * 54.99687 * 4 3 2 6 6 N 1.46905 * 109.47325 * 294.99733 * 4 3 2 7 7 C 1.46898 * 110.99935 * 84.99713 * 6 4 3 8 8 C 1.50699 * 109.47289 * 180.02562 * 7 6 4 9 9 O 1.21281 * 119.99851 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00026 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00080 * 180.02562 * 10 8 7 12 12 C 1.50697 * 109.47580 * 89.99520 * 11 10 8 13 13 H 1.08005 * 119.99649 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00196 * 180.02562 * 12 11 10 15 15 N 1.31516 * 120.00053 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00054 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.46952 * 60.00362 * 16 14 12 18 18 H 1.48504 * 109.47103 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47399 * 300.00049 * 16 14 12 20 20 C 1.46501 * 120.00181 * 359.97438 * 10 8 7 21 21 C 1.53001 * 109.46749 * 90.00287 * 20 10 8 22 22 C 1.47205 * 109.46705 * 179.97438 * 21 20 10 23 23 N 6.48511 * 53.99710 * 24.92808 * 2 1 3 24 24 C 1.50695 * 109.47139 * 175.00136 * 4 3 2 25 25 C 1.38226 * 120.00445 * 79.72433 * 24 4 3 26 26 C 1.38240 * 120.00304 * 179.81360 * 25 24 4 27 27 C 1.38232 * 119.99787 * 0.39308 * 26 25 24 28 28 C 1.38236 * 120.00187 * 359.86088 * 27 26 25 29 29 C 1.38231 * 119.99780 * 359.95273 * 28 27 26 30 30 H 4.44645 * 5.63342 * 179.97438 * 4 1 2 31 31 H 1.09001 * 109.47046 * 130.25833 * 3 2 1 32 32 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 33 33 H 1.00896 * 111.00177 * 208.95602 * 6 4 3 34 34 H 1.09003 * 109.47720 * 300.00913 * 7 6 4 35 35 H 1.09009 * 109.46992 * 60.00204 * 7 6 4 36 36 H 1.09005 * 109.47086 * 209.99866 * 11 10 8 37 37 H 1.09003 * 109.47074 * 329.99438 * 11 10 8 38 38 H 0.96996 * 120.00114 * 180.02562 * 15 14 12 39 39 H 1.08998 * 109.47058 * 210.00206 * 20 10 8 40 40 H 1.08994 * 109.47042 * 330.00413 * 20 10 8 41 41 H 1.08998 * 109.47275 * 299.99786 * 21 20 10 42 42 H 1.08994 * 109.47246 * 60.00251 * 21 20 10 43 43 H 1.08002 * 120.00335 * 0.02562 * 25 24 4 44 44 H 1.08001 * 120.00437 * 180.23258 * 26 25 24 45 45 H 1.07998 * 120.00125 * 179.83663 * 27 26 25 46 46 H 1.07997 * 119.99927 * 179.97438 * 28 27 26 47 47 H 1.08002 * 120.00152 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.4185 -0.2570 5 1 2.7221 -1.7992 -1.1813 6 7 2.7685 -2.2886 0.8612 7 6 1.4086 -2.8116 0.6738 8 6 1.0460 -3.6972 1.8380 9 8 1.8420 -3.8748 2.7357 10 7 -0.1626 -4.2919 1.8815 11 6 -0.5153 -5.1523 3.0135 12 6 -1.1643 -4.3233 4.0917 13 1 -1.3001 -3.2615 3.9482 14 6 -1.5838 -4.9201 5.2617 15 7 -1.4170 -6.2128 5.4370 16 14 -2.3876 -3.8923 6.5984 17 1 -3.6161 -3.2542 6.0608 18 1 -2.7441 -4.7644 7.7463 19 1 -1.4414 -2.8412 7.0511 20 6 -1.1243 -4.0769 0.7974 21 6 -0.9231 -5.1429 -0.2815 22 6 -1.8897 -4.9273 -1.3705 23 7 -2.6382 -4.7576 -2.2112 24 6 4.6585 -1.3975 -0.3791 25 6 5.4438 -1.3521 0.7575 26 6 6.8216 -1.3368 0.6455 27 6 7.4138 -1.3587 -0.6034 28 6 6.6284 -1.3988 -1.7402 29 6 5.2507 -1.4180 -1.6281 30 1 -1.0498 -0.0004 0.0001 31 1 3.0090 0.6649 -0.7843 32 1 3.0092 0.3479 0.9672 33 1 3.4313 -3.0397 0.9820 34 1 0.7046 -1.9814 0.6162 35 1 1.3655 -3.3891 -0.2498 36 1 -1.2097 -5.9239 2.6809 37 1 0.3862 -5.6207 3.4085 38 1 -1.7125 -6.6327 6.2599 39 1 -2.1380 -4.1460 1.1919 40 1 -0.9693 -3.0885 0.3649 41 1 0.0907 -5.0738 -0.6760 42 1 -1.0780 -6.1313 0.1509 43 1 4.9812 -1.3321 1.7332 44 1 7.4353 -1.3051 1.5336 45 1 8.4901 -1.3440 -0.6910 46 1 7.0911 -1.4155 -2.7159 47 1 4.6370 -1.4498 -2.5162 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271703515.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:23 Heat of formation + Delta-G solvation = 77.904123 kcal Electronic energy + Delta-G solvation = -28526.669407 eV Core-core repulsion = 24676.279812 eV Total energy + Delta-G solvation = -3850.389595 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.93415 -39.15710 -37.01866 -36.68344 -35.18511 -33.22057 -32.89694 -31.91185 -31.04983 -30.82568 -29.16149 -27.79659 -25.82496 -24.00785 -23.75313 -22.80940 -22.14769 -20.75320 -18.71425 -18.05797 -17.71004 -17.16383 -16.53851 -16.39629 -16.07671 -15.84744 -15.22137 -14.93278 -14.70328 -14.39133 -14.33619 -14.25595 -13.99617 -13.63690 -13.53705 -13.20120 -12.89737 -12.76822 -12.71651 -12.54065 -12.41902 -12.29438 -12.11937 -11.83627 -11.63155 -11.26742 -11.18303 -11.16107 -10.98569 -10.84729 -10.59004 -10.28281 -10.16977 -10.01806 -9.69740 -9.08551 -9.01743 -8.85409 -8.45037 -8.40884 -7.81500 -6.06824 -4.11155 1.11965 1.24130 2.70172 2.78185 2.78192 2.86304 3.31288 3.33068 3.36548 3.41698 3.53005 3.64127 4.01037 4.23727 4.33747 4.45001 4.65689 4.73386 4.83405 4.96007 4.99477 5.06339 5.08078 5.11386 5.22577 5.28354 5.32383 5.35626 5.43454 5.51397 5.53423 5.65701 5.77910 5.82708 5.83827 5.91114 6.03892 6.07453 6.26517 6.36576 6.37849 6.79112 6.83742 7.04138 7.35475 7.38680 7.45841 7.55716 7.60709 7.89560 8.19705 8.29162 8.87098 9.02968 9.54342 11.01292 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009531 B = 0.003142 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2937.226057 B = 8909.324823 C =10260.843276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.172 4.172 3 C 0.000 4.000 4 C 0.135 3.865 5 H 0.056 0.944 6 N -0.661 5.661 7 C 0.023 3.977 8 C 0.508 3.492 9 O -0.520 6.520 10 N -0.599 5.599 11 C 0.246 3.754 12 C -0.527 4.527 13 H 0.058 0.942 14 C 0.063 3.937 15 N -0.895 5.895 16 Si 0.896 3.104 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.276 1.276 20 C 0.118 3.882 21 C -0.050 4.050 22 C 0.216 3.784 23 N -0.445 5.445 24 C -0.093 4.093 25 C -0.094 4.094 26 C -0.121 4.121 27 C -0.120 4.120 28 C -0.125 4.125 29 C -0.112 4.112 30 H 0.216 0.784 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.354 0.646 34 H 0.112 0.888 35 H 0.050 0.950 36 H 0.034 0.966 37 H 0.046 0.954 38 H 0.264 0.736 39 H 0.094 0.906 40 H 0.073 0.927 41 H 0.104 0.896 42 H 0.118 0.882 43 H 0.137 0.863 44 H 0.123 0.877 45 H 0.119 0.881 46 H 0.120 0.880 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.489 9.309 -15.526 21.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.172 4.172 3 C -0.037 4.037 4 C 0.025 3.975 5 H 0.074 0.926 6 N -0.294 5.294 7 C -0.109 4.109 8 C 0.294 3.706 9 O -0.395 6.395 10 N -0.331 5.331 11 C 0.128 3.872 12 C -0.566 4.566 13 H 0.076 0.924 14 C -0.139 4.139 15 N -0.534 5.534 16 Si 0.724 3.276 17 H -0.203 1.203 18 H -0.212 1.212 19 H -0.201 1.201 20 C -0.008 4.008 21 C -0.092 4.092 22 C -0.102 4.102 23 N -0.123 5.123 24 C -0.093 4.093 25 C -0.112 4.112 26 C -0.139 4.139 27 C -0.138 4.138 28 C -0.143 4.143 29 C -0.130 4.130 30 H 0.233 0.767 31 H 0.106 0.894 32 H 0.116 0.884 33 H 0.174 0.826 34 H 0.130 0.870 35 H 0.067 0.933 36 H 0.052 0.948 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.113 0.887 40 H 0.092 0.908 41 H 0.122 0.878 42 H 0.136 0.864 43 H 0.155 0.845 44 H 0.141 0.859 45 H 0.137 0.863 46 H 0.138 0.862 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 11.574 9.800 -15.724 21.846 hybrid contribution -0.341 -0.263 0.397 0.585 sum 11.233 9.538 -15.327 21.262 Atomic orbital electron populations 1.24888 0.96004 1.00745 1.01415 1.22904 0.94362 0.99832 1.00151 1.18823 0.84905 0.96215 1.03793 1.20346 0.90332 0.93614 0.93184 0.92626 1.60188 1.02892 1.25034 1.41330 1.22385 0.92966 0.99474 0.96115 1.20216 0.82272 0.80671 0.87454 1.90688 1.49297 1.61002 1.38487 1.48192 1.13408 1.49120 1.22401 1.19321 0.96926 0.88932 0.82053 1.21386 1.39093 0.95041 1.01103 0.92420 1.24907 0.95950 0.94972 0.98114 1.69908 1.47107 1.09526 1.26828 0.86587 0.79659 0.80145 0.81215 1.20271 1.21237 1.20133 1.21283 0.96124 0.96314 0.87129 1.19911 0.95083 1.04084 0.90114 1.29209 0.93940 0.93016 0.93988 1.81303 1.10446 1.09050 1.11455 1.19830 0.94417 1.01504 0.93555 1.21223 0.93339 0.97482 0.99165 1.21232 0.95030 1.00109 0.97564 1.21188 0.99781 1.00064 0.92782 1.21084 0.93692 1.00938 0.98543 1.21033 0.94957 1.00273 0.96755 0.76724 0.89410 0.88432 0.82555 0.86993 0.93250 0.94824 0.93622 0.92652 0.88737 0.90836 0.87800 0.86441 0.84544 0.85932 0.86296 0.86213 0.86189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.42 17.65 29.55 0.52 -1.90 16 2 C -0.17 -2.03 11.24 -37.12 -0.42 -2.45 16 3 C 0.00 0.00 5.37 -29.52 -0.16 -0.16 16 4 C 0.14 1.38 2.45 -68.87 -0.17 1.21 16 5 H 0.06 0.54 7.66 -51.93 -0.40 0.14 16 6 N -0.66 -8.62 5.29 -109.22 -0.58 -9.20 16 7 C 0.02 0.31 4.29 -4.98 -0.02 0.29 16 8 C 0.51 9.45 7.71 -10.99 -0.08 9.37 16 9 O -0.52 -12.08 15.78 5.56 0.09 -11.99 16 10 N -0.60 -11.00 2.46 -175.06 -0.43 -11.43 16 11 C 0.25 5.85 5.16 -5.20 -0.03 5.83 16 12 C -0.53 -14.18 9.39 -34.44 -0.32 -14.50 16 13 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 14 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 15 N -0.89 -25.65 13.29 55.43 0.74 -24.91 16 16 Si 0.90 21.41 29.54 -169.99 -5.02 16.38 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 C 0.12 1.59 5.17 -4.04 -0.02 1.57 16 21 C -0.05 -0.53 6.03 -29.52 -0.18 -0.71 16 22 C 0.22 2.62 15.44 -20.68 -0.32 2.30 16 23 N -0.45 -6.51 18.55 42.25 0.78 -5.73 16 24 C -0.09 -0.89 4.71 -104.63 -0.49 -1.39 16 25 C -0.09 -0.95 9.01 -39.59 -0.36 -1.31 16 26 C -0.12 -1.10 10.05 -39.58 -0.40 -1.49 16 27 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 28 C -0.12 -1.00 10.05 -39.58 -0.40 -1.39 16 29 C -0.11 -0.95 9.67 -39.58 -0.38 -1.34 16 30 H 0.22 1.91 7.80 -54.10 -0.42 1.48 16 31 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.35 4.80 7.70 -39.29 -0.30 4.50 16 34 H 0.11 1.52 3.39 -51.93 -0.18 1.34 16 35 H 0.05 0.55 7.10 -51.92 -0.37 0.18 16 36 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 37 H 0.05 1.24 7.42 -51.93 -0.39 0.86 16 38 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 39 H 0.09 1.36 8.07 -51.93 -0.42 0.94 16 40 H 0.07 0.85 6.44 -51.93 -0.33 0.52 16 41 H 0.10 0.91 7.22 -51.93 -0.37 0.53 16 42 H 0.12 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.14 1.49 7.73 -52.49 -0.41 1.09 16 44 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 45 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 46 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 47 H 0.12 0.84 8.04 -52.49 -0.42 0.41 16 LS Contribution 406.45 15.07 6.13 6.13 Total: -1.00 -33.47 406.45 -8.52 -42.00 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -6.51 Total: 4.56 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -3.72 Total: -5.82 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: 0.51 Total: -51.26 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.09 Total: -11.99 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.47 -8.52 -42.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271703515.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.901 kcal (2) G-P(sol) polarization free energy of solvation -33.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds