Wall clock time and date at job start Sat Apr 11 2020 05:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17408 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46905 * 109.46862 * 108.73377 * 3 2 1 5 5 C 1.46893 * 111.00010 * 69.51884 * 4 3 2 6 6 C 1.50708 * 109.46791 * 199.22508 * 5 4 3 7 7 O 1.21279 * 119.99990 * 5.29389 * 6 5 4 8 8 N 1.34780 * 119.99662 * 185.29227 * 6 5 4 9 9 C 1.46503 * 119.99467 * 179.97438 * 8 6 5 10 10 C 1.50702 * 109.46616 * 90.00578 * 9 8 6 11 11 H 1.08000 * 120.00404 * 359.97438 * 10 9 8 12 12 C 1.37873 * 119.99618 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00701 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 120.00052 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47259 * 89.99849 * 14 12 10 16 16 H 1.48498 * 109.47344 * 210.00369 * 14 12 10 17 17 H 1.48507 * 109.46933 * 330.00342 * 14 12 10 18 18 C 1.46498 * 120.00127 * 0.02562 * 8 6 5 19 19 C 1.53003 * 109.47162 * 89.99651 * 18 8 6 20 20 C 1.47202 * 109.47180 * 179.97438 * 19 18 8 21 21 N 7.42850 * 109.39830 * 177.75206 * 2 1 3 22 22 C 1.46905 * 110.99601 * 193.47109 * 4 3 2 23 23 C 1.50699 * 109.47325 * 66.04438 * 22 4 3 24 24 C 1.38230 * 119.99691 * 90.00122 * 23 22 4 25 25 C 1.38233 * 119.99907 * 179.97438 * 24 23 22 26 26 C 1.38239 * 119.99801 * 359.95457 * 25 24 23 27 27 C 1.38238 * 120.00299 * 0.27618 * 26 25 24 28 28 C 1.38236 * 119.99528 * 359.51491 * 27 26 25 29 29 H 4.40885 * 5.52146 * 180.02562 * 4 1 2 30 30 H 1.09000 * 109.47526 * 348.73002 * 3 2 1 31 31 H 1.09001 * 109.47106 * 228.72910 * 3 2 1 32 32 H 1.09003 * 109.46984 * 319.22019 * 5 4 3 33 33 H 1.08998 * 109.47631 * 79.22847 * 5 4 3 34 34 H 1.08997 * 109.46877 * 210.00269 * 9 8 6 35 35 H 1.08992 * 109.47434 * 330.00509 * 9 8 6 36 36 H 0.96998 * 120.00533 * 179.97438 * 13 12 10 37 37 H 1.09001 * 109.46943 * 209.99497 * 18 8 6 38 38 H 1.08991 * 109.47423 * 329.99514 * 18 8 6 39 39 H 1.09001 * 109.47066 * 299.99770 * 19 18 8 40 40 H 1.09006 * 109.47118 * 60.00119 * 19 18 8 41 41 H 1.09010 * 109.47078 * 306.04080 * 22 4 3 42 42 H 1.09006 * 109.47067 * 186.04887 * 22 4 3 43 43 H 1.07999 * 120.00706 * 359.97438 * 24 23 22 44 44 H 1.07997 * 120.00493 * 179.97438 * 25 24 23 45 45 H 1.08006 * 119.99978 * 180.02562 * 26 25 24 46 46 H 1.07994 * 120.00288 * 179.72513 * 27 26 25 47 47 H 1.07997 * 120.00259 * 180.25530 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1354 0.4457 -1.3117 5 6 2.8578 1.8730 -1.5206 6 6 2.9258 2.1877 -2.9928 7 8 3.0850 1.2941 -3.7972 8 7 2.8097 3.4622 -3.4155 9 6 2.8764 3.7681 -4.8467 10 6 1.4911 3.7117 -5.4374 11 1 0.6457 3.4715 -4.8097 12 6 1.3031 3.9667 -6.7792 13 7 2.3325 4.2586 -7.5438 14 14 -0.4139 3.8960 -7.5117 15 1 -1.0457 5.2370 -7.4226 16 1 -0.3282 3.4828 -8.9355 17 1 -1.2330 2.9121 -6.7591 18 6 2.6180 4.5416 -2.4438 19 6 3.9810 5.0809 -2.0050 20 6 3.7883 6.1659 -1.0291 21 7 3.6413 7.0014 -0.2748 22 6 4.5685 0.1604 -1.4633 23 6 4.7841 -1.3309 -1.4873 24 6 4.7572 -2.0138 -2.6888 25 6 4.9554 -3.3817 -2.7109 26 6 5.1815 -4.0664 -1.5315 27 6 5.2036 -3.3842 -0.3294 28 6 5.0096 -2.0157 -0.3078 29 1 -1.0501 0.0001 0.0002 30 1 3.0099 -1.0070 0.2008 31 1 3.0090 0.6787 0.7724 32 1 1.8622 2.1083 -1.1443 33 1 3.5982 2.4691 -0.9871 34 1 3.2903 4.7668 -4.9858 35 1 3.5139 3.0380 -5.3451 36 1 2.2002 4.4377 -8.4879 37 1 2.0400 5.3443 -2.9018 38 1 2.0825 4.1580 -1.5755 39 1 4.5590 4.2782 -1.5471 40 1 4.5166 5.4647 -2.8734 41 1 5.1158 0.5933 -0.6258 42 1 4.9288 0.5947 -2.3959 43 1 4.5813 -1.4788 -3.6103 44 1 4.9340 -3.9154 -3.6495 45 1 5.3368 -5.1351 -1.5488 46 1 5.3758 -3.9198 0.5924 47 1 5.0310 -1.4820 0.6308 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285810620.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:32 Heat of formation + Delta-G solvation = 88.566741 kcal Electronic energy + Delta-G solvation = -28740.197131 eV Core-core repulsion = 24890.269902 eV Total energy + Delta-G solvation = -3849.927229 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.88561 -39.05458 -37.22543 -36.73059 -35.15247 -33.15564 -32.89473 -31.56506 -30.91150 -30.83443 -28.78679 -27.30469 -26.54232 -24.03716 -23.65365 -22.54589 -22.18877 -20.95074 -18.58828 -18.20579 -17.64800 -16.87283 -16.65006 -16.44297 -15.96841 -15.73869 -15.30325 -14.92310 -14.74219 -14.64011 -14.34717 -14.15641 -13.91178 -13.63357 -13.40596 -13.06570 -12.89861 -12.77995 -12.55796 -12.46885 -12.44116 -12.16913 -12.09680 -11.85203 -11.47361 -11.26342 -11.04527 -10.98074 -10.93280 -10.84150 -10.61437 -10.42201 -10.17842 -10.16327 -9.68473 -9.07004 -8.88304 -8.75027 -8.45922 -8.28642 -7.81073 -6.07509 -4.11653 1.29737 1.42271 2.68236 2.72930 2.78976 2.87894 3.29353 3.33069 3.37070 3.42422 3.56171 3.74194 4.08927 4.29620 4.41125 4.46311 4.75453 4.80233 4.93087 4.97650 5.03447 5.07575 5.11153 5.18082 5.21759 5.28040 5.33137 5.40061 5.46869 5.48823 5.53165 5.66198 5.72299 5.81270 5.97342 6.01213 6.05999 6.08297 6.41141 6.53473 6.65960 6.76585 6.93254 7.01337 7.04223 7.36972 7.45813 7.54937 7.66418 7.89163 8.19187 8.28978 8.87456 9.04189 9.54035 11.00535 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008288 B = 0.003508 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3377.751666 B = 7979.723620 C = 9526.423896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.180 4.180 3 C 0.157 3.843 4 N -0.509 5.509 5 C 0.032 3.968 6 C 0.509 3.491 7 O -0.509 6.509 8 N -0.600 5.600 9 C 0.247 3.753 10 C -0.527 4.527 11 H 0.058 0.942 12 C 0.063 3.937 13 N -0.894 5.894 14 Si 0.895 3.105 15 H -0.281 1.281 16 H -0.285 1.285 17 H -0.274 1.274 18 C 0.118 3.882 19 C -0.051 4.051 20 C 0.217 3.783 21 N -0.445 5.445 22 C 0.096 3.904 23 C -0.074 4.074 24 C -0.086 4.086 25 C -0.122 4.122 26 C -0.123 4.123 27 C -0.127 4.127 28 C -0.121 4.121 29 H 0.216 0.784 30 H 0.104 0.896 31 H 0.056 0.944 32 H 0.100 0.900 33 H 0.060 0.940 34 H 0.034 0.966 35 H 0.046 0.954 36 H 0.263 0.737 37 H 0.094 0.906 38 H 0.072 0.928 39 H 0.104 0.896 40 H 0.118 0.882 41 H 0.042 0.958 42 H 0.098 0.902 43 H 0.132 0.868 44 H 0.121 0.879 45 H 0.117 0.883 46 H 0.118 0.882 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.991 -10.023 16.126 19.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.181 4.181 3 C 0.031 3.969 4 N -0.233 5.233 5 C -0.099 4.099 6 C 0.294 3.706 7 O -0.383 6.383 8 N -0.334 5.334 9 C 0.129 3.871 10 C -0.566 4.566 11 H 0.076 0.924 12 C -0.139 4.139 13 N -0.533 5.533 14 Si 0.723 3.277 15 H -0.207 1.207 16 H -0.211 1.211 17 H -0.199 1.199 18 C -0.009 4.009 19 C -0.092 4.092 20 C -0.101 4.101 21 N -0.123 5.123 22 C -0.031 4.031 23 C -0.075 4.075 24 C -0.104 4.104 25 C -0.140 4.140 26 C -0.141 4.141 27 C -0.145 4.145 28 C -0.140 4.140 29 H 0.233 0.767 30 H 0.122 0.878 31 H 0.074 0.926 32 H 0.118 0.882 33 H 0.078 0.922 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.113 0.887 38 H 0.091 0.909 39 H 0.122 0.878 40 H 0.136 0.864 41 H 0.060 0.940 42 H 0.116 0.884 43 H 0.150 0.850 44 H 0.139 0.861 45 H 0.135 0.865 46 H 0.136 0.864 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 5.686 -9.473 16.225 19.630 hybrid contribution -0.807 0.188 -0.189 0.850 sum 4.879 -9.286 16.036 19.162 Atomic orbital electron populations 1.24883 0.95891 1.00904 0.99659 1.22773 0.94132 1.00460 1.00711 1.19147 0.85467 1.02165 0.90113 1.61452 1.16142 1.16622 1.29087 1.22190 1.02867 0.88587 0.96227 1.20131 0.77935 0.82927 0.89612 1.90683 1.47229 1.44863 1.55561 1.48232 1.71297 1.04592 1.09245 1.19312 0.97806 0.96892 0.73138 1.21424 0.93361 1.47674 0.94101 0.92413 1.24898 0.97062 0.95068 0.96888 1.69912 1.29738 1.47492 1.06190 0.86541 0.84475 0.78214 0.78476 1.20699 1.21121 1.19865 1.21278 0.93583 0.92596 0.93414 1.19919 1.01768 0.92204 0.95326 1.29081 0.93170 0.94147 0.93729 1.81173 1.08663 1.11172 1.11243 1.21130 0.87076 0.92357 1.02504 1.19709 0.99294 0.95155 0.93310 1.21240 0.96619 0.94098 0.98448 1.21212 0.99983 0.94618 0.98194 1.21129 1.00561 0.99644 0.92813 1.21038 1.01267 0.94341 0.97839 1.21040 1.00995 0.94531 0.97397 0.76712 0.87841 0.92581 0.88157 0.92221 0.94849 0.93588 0.92718 0.88742 0.90915 0.87788 0.86416 0.93993 0.88407 0.85020 0.86121 0.86481 0.86433 0.86467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.36 19.25 29.55 0.57 -1.79 16 2 C -0.18 -2.33 12.43 -37.13 -0.46 -2.80 16 3 C 0.16 1.77 5.28 -6.61 -0.03 1.74 16 4 N -0.51 -6.84 3.98 -241.02 -0.96 -7.80 16 5 C 0.03 0.43 3.79 -4.98 -0.02 0.41 16 6 C 0.51 9.18 7.22 -10.98 -0.08 9.10 16 7 O -0.51 -11.50 15.04 5.56 0.08 -11.41 16 8 N -0.60 -10.74 2.46 -175.06 -0.43 -11.17 16 9 C 0.25 5.76 5.16 -5.19 -0.03 5.73 16 10 C -0.53 -14.03 9.39 -34.44 -0.32 -14.35 16 11 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 12 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 13 N -0.89 -25.42 13.29 55.43 0.74 -24.69 16 14 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 18 C 0.12 1.54 5.09 -4.04 -0.02 1.52 16 19 C -0.05 -0.51 5.98 -29.52 -0.18 -0.68 16 20 C 0.22 2.55 15.43 -20.79 -0.32 2.23 16 21 N -0.45 -6.42 18.53 42.12 0.78 -5.64 16 22 C 0.10 1.15 4.76 -4.97 -0.02 1.13 16 23 C -0.07 -0.89 4.92 -104.63 -0.52 -1.41 16 24 C -0.09 -1.12 9.70 -39.59 -0.38 -1.51 16 25 C -0.12 -1.39 10.05 -39.58 -0.40 -1.79 16 26 C -0.12 -1.24 10.05 -39.58 -0.40 -1.63 16 27 C -0.13 -1.21 10.05 -39.58 -0.40 -1.61 16 28 C -0.12 -1.22 7.85 -39.58 -0.31 -1.53 16 29 H 0.22 1.91 7.80 -54.09 -0.42 1.49 16 30 H 0.10 1.10 5.27 -51.93 -0.27 0.83 16 31 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 32 H 0.10 1.32 6.54 -51.93 -0.34 0.98 16 33 H 0.06 0.60 6.76 -51.93 -0.35 0.25 16 34 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 35 H 0.05 1.22 7.42 -51.93 -0.39 0.84 16 36 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 37 H 0.09 1.33 8.07 -51.93 -0.42 0.91 16 38 H 0.07 0.80 6.59 -51.93 -0.34 0.46 16 39 H 0.10 0.83 7.13 -51.93 -0.37 0.46 16 40 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.04 0.40 8.07 -51.92 -0.42 -0.02 16 42 H 0.10 1.36 6.78 -51.93 -0.35 1.01 16 43 H 0.13 1.93 8.06 -52.49 -0.42 1.50 16 44 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 45 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 46 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 47 H 0.12 0.92 7.79 -52.49 -0.41 0.52 16 LS Contribution 406.89 15.07 6.13 6.13 Total: -1.00 -33.85 406.89 -8.68 -42.52 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -6.58 Total: 1.37 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -3.42 Total: -5.62 kcal Atomic # 7 Polarization: -49.42 SS G_CDS: 0.13 Total: -49.29 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.08 Total: -11.41 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.85 -8.68 -42.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285810620.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.092 kcal (2) G-P(sol) polarization free energy of solvation -33.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds