Wall clock time and date at job start Sat Apr 11 2020 05:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.45847 * 2 1 4 4 C 1.36932 * 119.99619 * 59.99920 * 3 2 1 5 5 H 1.07998 * 120.00517 * 0.02562 * 4 3 2 6 6 C 1.38820 * 119.99742 * 179.97438 * 4 3 2 7 7 N 1.31617 * 119.99920 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99805 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.46585 * 180.02562 * 8 6 4 10 10 H 1.48506 * 109.47079 * 299.99851 * 8 6 4 11 11 H 1.48493 * 109.47151 * 60.00226 * 8 6 4 12 12 C 1.53042 * 109.46319 * 119.97358 * 2 1 3 13 13 C 1.53161 * 109.32840 * 181.38697 * 12 2 1 14 14 N 1.46925 * 108.77020 * 305.35738 * 13 12 2 15 15 C 1.34774 * 120.63151 * 233.59080 * 14 13 12 16 16 O 1.21552 * 120.00107 * 174.17293 * 15 14 13 17 17 C 1.47885 * 119.99793 * 354.16958 * 15 14 13 18 18 C 1.40577 * 119.70396 * 138.36158 * 17 15 14 19 19 C 1.35818 * 120.73443 * 179.97438 * 18 17 15 20 20 C 1.40549 * 119.98217 * 359.97438 * 19 18 17 21 21 C 1.40816 * 121.13211 * 179.97438 * 20 19 18 22 22 C 1.36555 * 118.19937 * 180.02562 * 21 20 19 23 23 C 1.39418 * 119.93955 * 359.97438 * 22 21 20 24 24 N 1.31025 * 121.71092 * 0.02562 * 23 22 21 25 25 C 1.33746 * 121.35165 * 359.96429 * 24 23 22 26 26 C 1.38402 * 119.70769 * 318.08746 * 17 15 14 27 27 C 1.46925 * 118.73957 * 53.60373 * 14 13 12 28 28 C 1.53042 * 109.46114 * 240.03075 * 2 1 3 29 29 H 1.09001 * 109.47292 * 60.00070 * 1 2 3 30 30 H 1.08999 * 109.46833 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47145 * 299.99267 * 1 2 3 32 32 H 0.96995 * 119.99954 * 239.99797 * 3 2 1 33 33 H 0.97008 * 120.00093 * 359.97438 * 7 6 4 34 34 H 1.08995 * 109.49297 * 301.32680 * 12 2 1 35 35 H 1.09000 * 109.49731 * 61.42026 * 12 2 1 36 36 H 1.08996 * 109.59190 * 185.57071 * 13 12 2 37 37 H 1.09003 * 109.70861 * 65.20767 * 13 12 2 38 38 H 1.08004 * 119.63560 * 359.97438 * 18 17 15 39 39 H 1.07997 * 120.00860 * 179.97438 * 19 18 17 40 40 H 1.08001 * 120.90401 * 359.97438 * 21 20 19 41 41 H 1.08003 * 120.03370 * 180.02562 * 22 21 20 42 42 H 1.07997 * 119.14790 * 180.02562 * 23 22 21 43 43 H 1.07998 * 120.23469 * 0.02562 * 26 17 15 44 44 H 1.09003 * 109.59030 * 186.60576 * 27 14 13 45 45 H 1.09002 * 109.70277 * 66.25255 * 27 14 13 46 46 H 1.09005 * 109.49342 * 298.57777 * 28 2 1 47 47 H 1.08999 * 109.50011 * 58.63880 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3814 0.0000 4 6 1.6870 2.2244 1.0270 5 1 1.0665 1.8709 1.8372 6 6 2.1498 3.5332 1.0273 7 7 2.9065 3.9638 0.0402 8 14 1.6988 4.6830 2.4287 9 1 2.3130 6.0144 2.1936 10 1 0.2221 4.8247 2.4970 11 1 2.2023 4.1241 3.7090 12 6 2.0399 -0.7209 1.2500 13 6 3.5711 -0.6889 1.2645 14 7 4.0677 -1.2492 0.0003 15 6 4.9617 -2.2577 0.0003 16 8 5.2849 -2.7835 -1.0468 17 6 5.5495 -2.7246 1.2745 18 6 5.7120 -4.1021 1.5033 19 6 6.2500 -4.5539 2.6656 20 6 6.6517 -3.6406 3.6555 21 6 7.2117 -4.0823 4.8696 22 6 7.5806 -3.1431 5.7896 23 6 7.3989 -1.7888 5.5127 24 7 6.8775 -1.3810 4.3819 25 6 6.4954 -2.2489 3.4387 26 6 5.9401 -1.8013 2.2287 27 6 3.5714 -0.6889 -1.2640 28 6 2.0399 -0.7208 -1.2500 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 2.5756 1.6987 -0.7274 33 1 3.1410 3.3666 -0.6874 34 1 1.6574 -0.2209 2.1397 35 1 1.6977 -1.7557 1.2382 36 1 3.9413 -1.2848 2.0986 37 1 3.9163 0.3398 1.3687 38 1 5.4056 -4.8090 0.7463 39 1 6.3690 -5.6148 2.8293 40 1 7.3451 -5.1355 5.0682 41 1 8.0135 -3.4489 6.7306 42 1 7.6955 -1.0569 6.2492 43 1 5.8163 -0.7442 2.0453 44 1 3.9417 -1.2849 -2.0982 45 1 3.9144 0.3403 -1.3697 46 1 1.6976 -1.7557 -1.2383 47 1 1.6569 -0.2211 -2.1398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733868087.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:50 Heat of formation + Delta-G solvation = 41.860874 kcal Electronic energy + Delta-G solvation = -29784.863120 eV Core-core repulsion = 25932.910572 eV Total energy + Delta-G solvation = -3851.952548 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.17639 -40.02161 -38.06238 -36.80197 -34.74957 -33.75743 -32.61083 -31.33673 -30.64723 -30.02658 -28.74045 -27.77367 -25.18249 -24.20335 -23.66535 -23.14455 -22.58518 -22.20318 -20.34153 -18.81439 -18.00558 -17.42519 -17.20499 -16.94919 -16.27202 -15.67629 -15.27280 -14.92114 -14.73816 -14.48277 -14.30827 -14.07668 -13.96695 -13.62865 -13.55167 -13.36134 -13.28290 -12.97713 -12.58621 -12.31913 -12.10538 -11.81742 -11.75323 -11.60379 -11.39157 -11.27668 -10.89169 -10.77633 -10.75071 -10.51264 -10.29057 -9.97555 -9.90030 -9.78466 -9.62625 -9.09231 -8.99809 -8.94721 -8.46081 -8.30814 -7.03532 -6.08232 -3.09089 0.06720 0.47621 1.68554 2.39136 3.00426 3.20539 3.51808 3.54365 3.71874 3.87172 4.04690 4.29688 4.44062 4.54711 4.61229 4.66479 4.78595 4.87308 5.03083 5.17890 5.23141 5.25277 5.30644 5.47842 5.51626 5.56332 5.61936 5.65503 5.68914 5.71708 5.81777 5.96472 5.98334 6.02876 6.07109 6.13506 6.18244 6.25080 6.31817 6.36411 6.43295 6.51003 6.52986 6.66529 6.76390 6.94339 6.99935 7.60986 7.69580 7.82070 8.24526 8.76096 9.22138 10.08857 10.24479 11.39384 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010706 B = 0.003837 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.700586 B = 7296.177164 C = 9061.910842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.203 3.797 3 N -0.728 5.728 4 C -0.323 4.323 5 H 0.064 0.936 6 C -0.043 4.043 7 N -0.944 5.944 8 Si 1.074 2.926 9 H -0.286 1.286 10 H -0.297 1.297 11 H -0.296 1.296 12 C -0.133 4.133 13 C 0.107 3.893 14 N -0.590 5.590 15 C 0.555 3.445 16 O -0.546 6.546 17 C -0.103 4.103 18 C -0.070 4.070 19 C -0.105 4.105 20 C -0.090 4.090 21 C -0.062 4.062 22 C -0.170 4.170 23 C 0.129 3.871 24 N -0.462 5.462 25 C 0.119 3.881 26 C -0.050 4.050 27 C 0.117 3.883 28 C -0.130 4.130 29 H 0.048 0.952 30 H 0.035 0.965 31 H 0.057 0.943 32 H 0.366 0.634 33 H 0.254 0.746 34 H 0.076 0.924 35 H 0.048 0.952 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.161 0.839 43 H 0.149 0.851 44 H 0.086 0.914 45 H 0.075 0.925 46 H 0.064 0.936 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.442 -18.214 8.797 21.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.111 3.889 3 N -0.372 5.372 4 C -0.454 4.454 5 H 0.082 0.918 6 C -0.240 4.240 7 N -0.589 5.589 8 Si 0.905 3.095 9 H -0.212 1.212 10 H -0.224 1.224 11 H -0.223 1.223 12 C -0.173 4.173 13 C -0.015 4.015 14 N -0.321 5.321 15 C 0.343 3.657 16 O -0.425 6.425 17 C -0.108 4.108 18 C -0.089 4.089 19 C -0.124 4.124 20 C -0.092 4.092 21 C -0.088 4.088 22 C -0.190 4.190 23 C -0.045 4.045 24 N -0.170 5.170 25 C -0.002 4.002 26 C -0.069 4.069 27 C -0.005 4.005 28 C -0.169 4.169 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.201 0.799 33 H 0.065 0.935 34 H 0.095 0.905 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.109 0.891 38 H 0.153 0.847 39 H 0.153 0.847 40 H 0.157 0.843 41 H 0.156 0.844 42 H 0.178 0.822 43 H 0.167 0.833 44 H 0.104 0.896 45 H 0.093 0.907 46 H 0.083 0.917 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.481 -16.063 8.727 19.395 hybrid contribution -0.051 -2.266 -0.397 2.301 sum 6.430 -18.328 8.330 21.134 Atomic orbital electron populations 1.22191 0.97457 0.98983 1.02155 1.19465 0.92204 0.85723 0.91459 1.42511 1.61210 1.06660 1.26783 1.19901 1.29659 0.94429 1.01451 0.91764 1.25634 0.99027 0.95932 1.03447 1.70894 1.38861 1.37927 1.11220 0.83315 0.75318 0.76420 0.74405 1.21165 1.22440 1.22310 1.22281 0.94472 0.99134 1.01420 1.22062 0.95437 1.00080 0.83908 1.48041 1.41551 1.33865 1.08655 1.18254 0.79467 0.79651 0.88318 1.90751 1.62118 1.56941 1.32691 1.19939 1.01793 0.94300 0.94740 1.20838 0.96844 0.94008 0.97187 1.20850 0.99254 0.99266 0.92986 1.18944 1.00229 0.94211 0.95824 1.21484 0.94896 1.00439 0.92024 1.21961 1.01770 0.94428 1.00869 1.23039 0.93176 0.94545 0.93735 1.68076 1.09596 1.37841 1.01472 1.18737 0.98375 0.88837 0.94203 1.21495 0.94433 1.00801 0.90194 1.21590 0.94295 0.99151 0.85500 1.22108 0.94772 1.00640 0.99377 0.93249 0.94559 0.92442 0.79931 0.93465 0.90501 0.93303 0.90636 0.89109 0.84657 0.84706 0.84294 0.84407 0.82153 0.83329 0.89579 0.90720 0.91701 0.90777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 8.44 37.16 0.31 -2.34 16 2 C 0.20 3.75 0.74 -131.77 -0.10 3.65 16 3 N -0.73 -16.53 4.14 -47.19 -0.20 -16.72 16 4 C -0.32 -8.35 8.68 -15.06 -0.13 -8.48 16 5 H 0.06 1.65 6.70 -52.49 -0.35 1.30 16 6 C -0.04 -1.18 5.50 -17.43 -0.10 -1.27 16 7 N -0.94 -28.10 13.70 55.49 0.76 -27.34 16 8 Si 1.07 25.30 29.92 -169.99 -5.09 20.22 16 9 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 10 H -0.30 -6.74 7.11 56.52 0.40 -6.33 16 11 H -0.30 -6.68 7.11 56.52 0.40 -6.28 16 12 C -0.13 -2.30 4.70 -26.63 -0.13 -2.43 16 13 C 0.11 1.82 4.65 -3.73 -0.02 1.80 16 14 N -0.59 -9.89 2.97 -173.89 -0.52 -10.41 16 15 C 0.56 9.35 7.28 -12.31 -0.09 9.26 16 16 O -0.55 -10.45 16.36 5.32 0.09 -10.37 16 17 C -0.10 -1.49 5.08 -105.01 -0.53 -2.02 16 18 C -0.07 -0.85 9.54 -39.57 -0.38 -1.22 16 19 C -0.10 -1.05 9.74 -39.58 -0.39 -1.44 16 20 C -0.09 -1.01 5.75 -106.73 -0.61 -1.62 16 21 C -0.06 -0.52 9.88 -39.22 -0.39 -0.91 16 22 C -0.17 -1.32 10.03 -39.75 -0.40 -1.71 16 23 C 0.13 1.27 11.15 -17.46 -0.19 1.08 16 24 N -0.46 -6.32 10.34 -10.98 -0.11 -6.43 16 25 C 0.12 1.63 6.60 -84.87 -0.56 1.07 16 26 C -0.05 -0.73 7.35 -38.68 -0.28 -1.01 16 27 C 0.12 1.96 6.17 -3.71 -0.02 1.94 16 28 C -0.13 -2.12 4.96 -26.61 -0.13 -2.25 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 1.10 7.27 -51.93 -0.38 0.73 16 32 H 0.37 8.78 5.30 -40.82 -0.22 8.56 16 33 H 0.25 7.45 6.78 -40.82 -0.28 7.17 16 34 H 0.08 1.43 7.31 -51.93 -0.38 1.05 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 1.17 4.83 -51.93 -0.25 0.92 16 37 H 0.09 1.81 7.73 -51.93 -0.40 1.41 16 38 H 0.14 1.49 8.06 -52.48 -0.42 1.07 16 39 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 40 H 0.14 0.72 8.06 -52.49 -0.42 0.29 16 41 H 0.14 0.61 8.06 -52.48 -0.42 0.18 16 42 H 0.16 1.11 8.06 -52.49 -0.42 0.69 16 43 H 0.15 2.31 6.71 -52.49 -0.35 1.95 16 44 H 0.09 1.42 7.00 -51.93 -0.36 1.06 16 45 H 0.07 1.36 6.94 -51.93 -0.36 0.99 16 46 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 372.53 15.07 5.61 5.61 Total: -1.00 -32.45 372.53 -9.94 -42.39 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -6.35 Total: 10.97 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -4.13 Total: -7.91 kcal Atomic # 7 Polarization: -60.84 SS G_CDS: -0.07 Total: -60.91 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.09 Total: -10.37 kcal Atomic # 14 Polarization: 25.30 SS G_CDS: -5.09 Total: 20.22 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.45 -9.94 -42.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733868087.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.249 kcal (2) G-P(sol) polarization free energy of solvation -32.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds