Wall clock time and date at job start Sat Apr 11 2020 05:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.45847 * 2 1 4 4 C 1.36932 * 119.99619 * 59.99920 * 3 2 1 5 5 H 1.07998 * 120.00517 * 0.02562 * 4 3 2 6 6 C 1.38820 * 119.99742 * 179.97438 * 4 3 2 7 7 N 1.31617 * 119.99920 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99805 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.46585 * 180.02562 * 8 6 4 10 10 H 1.48506 * 109.47079 * 299.99851 * 8 6 4 11 11 H 1.48493 * 109.47151 * 60.00226 * 8 6 4 12 12 C 1.53042 * 109.46319 * 119.97358 * 2 1 3 13 13 C 1.53161 * 109.32840 * 181.38697 * 12 2 1 14 14 N 1.46925 * 108.77020 * 305.35738 * 13 12 2 15 15 C 1.34774 * 120.63151 * 233.59080 * 14 13 12 16 16 O 1.21552 * 120.00107 * 174.17293 * 15 14 13 17 17 C 1.47885 * 119.99793 * 354.16958 * 15 14 13 18 18 C 1.40577 * 119.70396 * 138.36158 * 17 15 14 19 19 C 1.35818 * 120.73443 * 179.97438 * 18 17 15 20 20 C 1.40549 * 119.98217 * 359.97438 * 19 18 17 21 21 C 1.40816 * 121.13211 * 179.97438 * 20 19 18 22 22 C 1.36555 * 118.19937 * 180.02562 * 21 20 19 23 23 C 1.39418 * 119.93955 * 359.97438 * 22 21 20 24 24 N 1.31025 * 121.71092 * 0.02562 * 23 22 21 25 25 C 1.33746 * 121.35165 * 359.96429 * 24 23 22 26 26 C 1.38402 * 119.70769 * 318.08746 * 17 15 14 27 27 C 1.46925 * 118.73957 * 53.60373 * 14 13 12 28 28 C 1.53042 * 109.46114 * 240.03075 * 2 1 3 29 29 H 1.09001 * 109.47292 * 60.00070 * 1 2 3 30 30 H 1.08999 * 109.46833 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47145 * 299.99267 * 1 2 3 32 32 H 0.96995 * 119.99954 * 239.99797 * 3 2 1 33 33 H 0.97008 * 120.00093 * 359.97438 * 7 6 4 34 34 H 1.08995 * 109.49297 * 301.32680 * 12 2 1 35 35 H 1.09000 * 109.49731 * 61.42026 * 12 2 1 36 36 H 1.08996 * 109.59190 * 185.57071 * 13 12 2 37 37 H 1.09003 * 109.70861 * 65.20767 * 13 12 2 38 38 H 1.08004 * 119.63560 * 359.97438 * 18 17 15 39 39 H 1.07997 * 120.00860 * 179.97438 * 19 18 17 40 40 H 1.08001 * 120.90401 * 359.97438 * 21 20 19 41 41 H 1.08003 * 120.03370 * 180.02562 * 22 21 20 42 42 H 1.07997 * 119.14790 * 180.02562 * 23 22 21 43 43 H 1.07998 * 120.23469 * 0.02562 * 26 17 15 44 44 H 1.09003 * 109.59030 * 186.60576 * 27 14 13 45 45 H 1.09002 * 109.70277 * 66.25255 * 27 14 13 46 46 H 1.09005 * 109.49342 * 298.57777 * 28 2 1 47 47 H 1.08999 * 109.50011 * 58.63880 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3814 0.0000 4 6 1.6870 2.2244 1.0270 5 1 1.0665 1.8709 1.8372 6 6 2.1498 3.5332 1.0273 7 7 2.9065 3.9638 0.0402 8 14 1.6988 4.6830 2.4287 9 1 2.3130 6.0144 2.1936 10 1 0.2221 4.8247 2.4970 11 1 2.2023 4.1241 3.7090 12 6 2.0399 -0.7209 1.2500 13 6 3.5711 -0.6889 1.2645 14 7 4.0677 -1.2492 0.0003 15 6 4.9617 -2.2577 0.0003 16 8 5.2849 -2.7835 -1.0468 17 6 5.5495 -2.7246 1.2745 18 6 5.7120 -4.1021 1.5033 19 6 6.2500 -4.5539 2.6656 20 6 6.6517 -3.6406 3.6555 21 6 7.2117 -4.0823 4.8696 22 6 7.5806 -3.1431 5.7896 23 6 7.3989 -1.7888 5.5127 24 7 6.8775 -1.3810 4.3819 25 6 6.4954 -2.2489 3.4387 26 6 5.9401 -1.8013 2.2287 27 6 3.5714 -0.6889 -1.2640 28 6 2.0399 -0.7208 -1.2500 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 2.5756 1.6987 -0.7274 33 1 3.1410 3.3666 -0.6874 34 1 1.6574 -0.2209 2.1397 35 1 1.6977 -1.7557 1.2382 36 1 3.9413 -1.2848 2.0986 37 1 3.9163 0.3398 1.3687 38 1 5.4056 -4.8090 0.7463 39 1 6.3690 -5.6148 2.8293 40 1 7.3451 -5.1355 5.0682 41 1 8.0135 -3.4489 6.7306 42 1 7.6955 -1.0569 6.2492 43 1 5.8163 -0.7442 2.0453 44 1 3.9417 -1.2849 -2.0982 45 1 3.9144 0.3403 -1.3697 46 1 1.6976 -1.7557 -1.2383 47 1 1.6569 -0.2211 -2.1398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733868087.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:49 Heat of formation + Delta-G solvation = 22.344506 kcal Electronic energy + Delta-G solvation = -29785.709413 eV Core-core repulsion = 25932.910572 eV Total energy + Delta-G solvation = -3852.798841 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.15698 -41.22863 -39.48668 -37.78613 -36.33221 -34.74568 -34.28148 -32.56377 -31.61238 -31.05873 -30.54997 -29.20952 -26.26579 -25.66423 -24.99044 -24.47827 -23.88682 -23.13426 -21.62751 -20.24620 -19.19353 -18.88009 -18.45097 -18.01229 -17.45289 -16.85628 -16.77100 -16.31074 -15.93740 -15.59374 -15.42888 -15.34406 -15.24698 -15.09612 -14.97913 -14.42548 -14.34194 -14.17112 -13.93280 -13.68238 -13.29131 -13.06931 -12.86053 -12.79668 -12.74483 -12.61367 -12.53950 -12.30309 -12.21601 -11.94696 -11.80113 -11.57115 -11.48636 -11.10700 -10.97574 -10.83131 -10.47641 -9.91725 -9.74746 -9.33044 -9.00445 -8.26424 -5.20089 -0.78756 -0.36222 0.84947 1.36648 1.58941 1.67894 1.78837 1.83099 2.04319 2.75087 3.01583 3.10766 3.42401 3.49314 3.51824 3.64739 3.79608 3.81577 3.84149 3.96493 4.00563 4.03736 4.05483 4.15976 4.27637 4.30249 4.49491 4.52789 4.55820 4.65751 4.66646 4.75488 4.84008 4.85799 4.89295 4.92798 4.96799 5.03137 5.07974 5.13268 5.21257 5.23574 5.29963 5.46399 5.48275 5.54144 5.73844 5.76452 6.24403 6.60080 6.88865 6.92103 7.19234 8.10175 8.22696 9.25073 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010706 B = 0.003837 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.700586 B = 7296.177164 C = 9061.910842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.193 3.807 3 N -0.736 5.736 4 C -0.301 4.301 5 H 0.067 0.933 6 C -0.106 4.106 7 N -0.982 5.982 8 Si 1.116 2.884 9 H -0.300 1.300 10 H -0.280 1.280 11 H -0.281 1.281 12 C -0.127 4.127 13 C 0.122 3.878 14 N -0.591 5.591 15 C 0.555 3.445 16 O -0.572 6.572 17 C -0.113 4.113 18 C -0.089 4.089 19 C -0.078 4.078 20 C -0.103 4.103 21 C -0.055 4.055 22 C -0.162 4.162 23 C 0.126 3.874 24 N -0.515 5.515 25 C 0.097 3.903 26 C -0.070 4.070 27 C 0.118 3.882 28 C -0.120 4.120 29 H 0.041 0.959 30 H 0.069 0.931 31 H 0.039 0.961 32 H 0.357 0.643 33 H 0.242 0.758 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.051 0.949 38 H 0.145 0.855 39 H 0.179 0.821 40 H 0.182 0.818 41 H 0.181 0.819 42 H 0.184 0.816 43 H 0.121 0.879 44 H 0.091 0.909 45 H 0.052 0.948 46 H 0.086 0.914 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.537 -22.007 11.506 25.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.104 3.896 3 N -0.378 5.378 4 C -0.433 4.433 5 H 0.085 0.915 6 C -0.297 4.297 7 N -0.632 5.632 8 Si 0.943 3.057 9 H -0.227 1.227 10 H -0.207 1.207 11 H -0.208 1.208 12 C -0.167 4.167 13 C -0.001 4.001 14 N -0.321 5.321 15 C 0.345 3.655 16 O -0.453 6.453 17 C -0.118 4.118 18 C -0.108 4.108 19 C -0.097 4.097 20 C -0.105 4.105 21 C -0.080 4.080 22 C -0.181 4.181 23 C -0.046 4.046 24 N -0.224 5.224 25 C -0.023 4.023 26 C -0.090 4.090 27 C -0.004 4.004 28 C -0.158 4.158 29 H 0.060 0.940 30 H 0.088 0.912 31 H 0.059 0.941 32 H 0.190 0.810 33 H 0.052 0.948 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.109 0.891 37 H 0.070 0.930 38 H 0.162 0.838 39 H 0.197 0.803 40 H 0.200 0.800 41 H 0.198 0.802 42 H 0.201 0.799 43 H 0.139 0.861 44 H 0.109 0.891 45 H 0.070 0.930 46 H 0.105 0.895 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.542 -19.908 11.451 23.880 hybrid contribution 0.021 -1.201 -1.099 1.628 sum 6.563 -21.109 10.352 24.409 Atomic orbital electron populations 1.22099 0.96291 1.00768 1.00919 1.19782 0.92914 0.83793 0.93151 1.42680 1.61125 1.08246 1.25782 1.20146 1.27269 0.94401 1.01450 0.91484 1.26797 0.99716 0.98191 1.04973 1.70991 1.41690 1.38122 1.12347 0.82747 0.75866 0.74238 0.72824 1.22654 1.20682 1.20794 1.22215 0.94255 1.00223 1.00016 1.21813 0.95353 0.98199 0.84702 1.48044 1.41797 1.33943 1.08341 1.18679 0.78749 0.79045 0.89051 1.90718 1.62853 1.57862 1.33890 1.19818 1.02798 0.95671 0.93468 1.20972 0.98400 0.92692 0.98687 1.21295 0.96068 1.01119 0.91184 1.19266 1.00550 0.93081 0.97576 1.21997 0.92986 1.02724 0.90321 1.22405 1.00373 0.93043 1.02283 1.23672 0.91379 0.96766 0.92826 1.68039 1.12088 1.39179 1.03115 1.18826 0.99151 0.90465 0.93876 1.21279 0.96583 0.99501 0.91603 1.21518 0.95006 0.97985 0.85919 1.22029 0.93883 1.01515 0.98382 0.93983 0.91250 0.94134 0.80983 0.94750 0.91836 0.90695 0.89144 0.93014 0.83766 0.80327 0.80025 0.80194 0.79880 0.86097 0.89117 0.92981 0.89507 0.90271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.88 8.44 71.98 0.61 -4.27 16 2 C 0.19 7.12 0.74 3.63 0.00 7.13 16 3 N -0.74 -34.56 4.14 -303.21 -1.25 -35.81 16 4 C -0.30 -15.91 8.68 84.04 0.73 -15.18 16 5 H 0.07 3.47 6.70 -2.91 -0.02 3.45 16 6 C -0.11 -6.01 5.50 84.86 0.47 -5.54 16 7 N -0.98 -61.13 13.70 21.65 0.30 -60.83 16 8 Si 1.12 52.20 29.92 68.60 2.05 54.26 16 9 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 10 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 12 C -0.13 -4.38 4.70 30.66 0.14 -4.23 16 13 C 0.12 4.32 4.65 86.35 0.40 4.72 16 14 N -0.59 -20.59 2.97 -822.33 -2.44 -23.03 16 15 C 0.56 19.28 7.28 86.80 0.63 19.91 16 16 O -0.57 -22.37 16.36 -3.88 -0.06 -22.44 16 17 C -0.11 -3.34 5.08 -20.11 -0.10 -3.44 16 18 C -0.09 -2.02 9.54 22.28 0.21 -1.81 16 19 C -0.08 -1.31 9.74 22.27 0.22 -1.10 16 20 C -0.10 -2.02 5.75 -21.23 -0.12 -2.15 16 21 C -0.05 -0.65 9.88 22.51 0.22 -0.43 16 22 C -0.16 -1.79 10.03 22.16 0.22 -1.56 16 23 C 0.13 2.24 11.15 85.10 0.95 3.19 16 24 N -0.52 -14.17 10.34 -188.65 -1.95 -16.12 16 25 C 0.10 2.65 6.60 40.25 0.27 2.92 16 26 C -0.07 -2.16 7.35 22.85 0.17 -2.00 16 27 C 0.12 4.12 6.17 86.36 0.53 4.65 16 28 C -0.12 -3.84 4.96 30.67 0.15 -3.69 16 29 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.04 1.51 7.27 -2.39 -0.02 1.50 16 32 H 0.36 18.08 5.30 -92.71 -0.49 17.58 16 33 H 0.24 15.04 6.78 -92.70 -0.63 14.41 16 34 H 0.06 2.36 7.31 -2.39 -0.02 2.34 16 35 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.09 2.96 4.83 -2.39 -0.01 2.95 16 37 H 0.05 2.24 7.73 -2.39 -0.02 2.22 16 38 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 39 H 0.18 1.37 8.06 -2.91 -0.02 1.35 16 40 H 0.18 0.60 8.06 -2.91 -0.02 0.57 16 41 H 0.18 0.48 8.06 -2.91 -0.02 0.45 16 42 H 0.18 2.13 8.06 -2.91 -0.02 2.11 16 43 H 0.12 4.23 6.71 -2.91 -0.02 4.21 16 44 H 0.09 3.08 7.00 -2.39 -0.02 3.06 16 45 H 0.05 2.04 6.94 -2.39 -0.02 2.02 16 46 H 0.09 2.44 8.14 -2.38 -0.02 2.42 16 47 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -75.31 372.53 2.99 -72.32 By element: Atomic # 1 Polarization: 33.89 SS G_CDS: 0.65 Total: 34.54 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: 5.70 Total: -2.88 kcal Atomic # 7 Polarization: -130.45 SS G_CDS: -5.35 Total: -135.80 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -0.06 Total: -22.44 kcal Atomic # 14 Polarization: 52.20 SS G_CDS: 2.05 Total: 54.26 kcal Total: -75.31 2.99 -72.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733868087.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.665 kcal (2) G-P(sol) polarization free energy of solvation -75.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds