Wall clock time and date at job start Sat Apr 11 2020 05:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.39312 * 119.11580 * 2 1 4 4 C 1.36574 * 119.90238 * 179.97438 * 3 2 1 5 5 C 1.40895 * 118.15621 * 0.02562 * 4 3 2 6 6 C 1.40182 * 121.21078 * 179.97438 * 5 4 3 7 7 C 1.38551 * 119.39966 * 179.68483 * 6 5 4 8 8 C 1.47768 * 119.80900 * 180.32897 * 7 6 5 9 9 O 1.21566 * 119.99776 * 22.50524 * 8 7 6 10 10 N 1.34768 * 120.00385 * 202.50762 * 8 7 6 11 11 C 1.47430 * 125.64595 * 6.13575 * 10 8 7 12 12 C 1.54912 * 104.82971 * 155.83970 * 11 10 8 13 13 C 1.55158 * 101.58076 * 37.01106 * 12 11 10 14 14 C 1.47022 * 125.65175 * 185.83768 * 10 8 7 15 15 H 1.08999 * 109.87953 * 300.50726 * 14 10 8 16 16 C 1.52997 * 109.88347 * 61.67334 * 14 10 8 17 17 N 1.46500 * 109.47114 * 283.98836 * 16 14 10 18 18 C 1.36939 * 120.00166 * 175.42491 * 17 16 14 19 19 H 1.08000 * 119.99706 * 0.02562 * 18 17 16 20 20 C 1.38810 * 119.99969 * 180.02562 * 18 17 16 21 21 N 1.31619 * 120.00297 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00074 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47140 * 59.99227 * 22 20 18 24 24 H 1.48496 * 109.47502 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46783 * 299.99658 * 22 20 18 26 26 C 1.40635 * 120.38450 * 0.61372 * 7 6 5 27 27 C 1.35694 * 120.92699 * 359.42003 * 26 7 6 28 28 C 1.40760 * 120.11106 * 0.25151 * 27 26 7 29 29 N 1.31120 * 119.11143 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.46625 * 89.99845 * 1 2 3 31 31 H 1.08996 * 109.47080 * 209.99859 * 1 2 3 32 32 H 1.08994 * 109.46728 * 330.00319 * 1 2 3 33 33 H 1.08002 * 120.04944 * 359.97438 * 3 2 1 34 34 H 1.08001 * 120.91999 * 179.97438 * 4 3 2 35 35 H 1.08005 * 120.30122 * 0.02562 * 6 5 4 36 36 H 1.08994 * 110.37055 * 274.67784 * 11 10 8 37 37 H 1.08997 * 110.36853 * 37.00361 * 11 10 8 38 38 H 1.08999 * 111.00512 * 155.08404 * 12 11 10 39 39 H 1.08996 * 111.00666 * 278.93681 * 12 11 10 40 40 H 1.08995 * 110.72212 * 82.86648 * 13 12 11 41 41 H 1.09009 * 110.71654 * 205.95585 * 13 12 11 42 42 H 1.08995 * 109.47458 * 43.98964 * 16 14 10 43 43 H 1.09008 * 109.47282 * 163.99329 * 16 14 10 44 44 H 0.96998 * 120.00033 * 355.43452 * 17 16 14 45 45 H 0.96998 * 120.00080 * 180.02562 * 21 20 18 46 46 H 1.07999 * 119.52984 * 179.69265 * 26 7 6 47 47 H 1.07997 * 119.94531 * 180.27740 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1849 1.2171 0.0000 4 6 3.5505 1.2358 0.0005 5 6 4.2324 0.0029 0.0005 6 6 5.6331 -0.0526 0.0005 7 6 6.2650 -1.2857 0.0071 8 6 7.7410 -1.3546 0.0145 9 8 8.3916 -0.4103 0.4180 10 7 8.3660 -2.4644 -0.4260 11 6 7.7123 -3.6254 -1.0570 12 6 8.8224 -4.2915 -1.9078 13 6 10.0678 -4.0956 -1.0034 14 6 9.8133 -2.7151 -0.3625 15 1 10.3478 -1.9432 -0.9161 16 6 10.2757 -2.7283 1.0958 17 7 10.3414 -1.3543 1.5997 18 6 10.6423 -1.1210 2.9151 19 1 10.8315 -1.9500 3.5810 20 6 10.7040 0.1809 3.3926 21 7 10.4739 1.1912 2.5810 22 14 11.1152 0.4992 5.1868 23 1 12.4562 -0.0597 5.4940 24 1 11.1187 1.9621 5.4419 25 1 10.0978 -0.1519 6.0508 26 6 5.5097 -2.4720 0.0008 27 6 4.1533 -2.4352 -0.0001 28 6 3.4804 -1.1988 0.0001 29 7 2.1450 -1.1456 -0.0005 30 1 -0.3632 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3632 0.8900 0.5138 33 1 1.6314 2.1444 -0.0004 34 1 4.0927 2.1699 0.0001 35 1 6.2145 0.8576 0.0009 36 1 7.3510 -4.3172 -0.2962 37 1 6.8908 -3.2983 -1.6944 38 1 8.6142 -5.3503 -2.0620 39 1 8.9465 -3.7766 -2.8604 40 1 10.1184 -4.8746 -0.2427 41 1 10.9797 -4.0819 -1.6005 42 1 9.5693 -3.3019 1.6958 43 1 11.2627 -3.1864 1.1600 44 1 10.1716 -0.6097 1.0016 45 1 10.5174 2.1010 2.9147 46 1 6.0166 -3.4257 0.0010 47 1 3.5890 -3.3560 -0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753601740.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:18 Heat of formation + Delta-G solvation = 32.191122 kcal Electronic energy + Delta-G solvation = -29295.356510 eV Core-core repulsion = 25442.984651 eV Total energy + Delta-G solvation = -3852.371860 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.06472 -41.12344 -38.70172 -37.87608 -36.22140 -34.59909 -33.68565 -33.02388 -32.21569 -31.16946 -30.38978 -28.88756 -26.78952 -25.36210 -24.78416 -24.26307 -23.12824 -22.92057 -21.95589 -20.36606 -19.63319 -19.01021 -18.25764 -17.66032 -17.33957 -16.78765 -16.59403 -16.17561 -15.75835 -15.55307 -15.27739 -15.17276 -15.06105 -14.83077 -14.70951 -14.28692 -14.04352 -13.96912 -13.88633 -13.67175 -13.40262 -13.12602 -13.05399 -13.00125 -12.89316 -12.68398 -12.47178 -12.30975 -12.28727 -12.01501 -11.78617 -11.61508 -11.60346 -11.48132 -10.91216 -10.72181 -10.55587 -9.73864 -9.58924 -9.28468 -8.83790 -7.82358 -5.11246 -0.80856 -0.36056 0.84428 1.39584 1.44894 1.45943 1.50775 2.01794 2.28751 2.57167 3.00854 3.14259 3.43229 3.46561 3.53151 3.60485 3.69426 3.76076 3.84867 3.96961 4.01738 4.04519 4.19386 4.29796 4.36666 4.41307 4.47279 4.61359 4.66248 4.76870 4.80911 4.81867 4.83488 4.85621 4.89476 4.94015 5.00540 5.02472 5.15404 5.17650 5.18267 5.20656 5.24961 5.40941 5.46574 5.50208 5.60515 5.75306 6.34590 6.61822 6.85872 7.27503 7.47873 8.31611 8.58764 9.38950 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009818 B = 0.003658 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2851.163179 B = 7652.912664 C = 9875.047249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.158 3.842 3 C -0.169 4.169 4 C -0.057 4.057 5 C -0.132 4.132 6 C -0.043 4.043 7 C -0.135 4.135 8 C 0.545 3.455 9 O -0.531 6.531 10 N -0.612 5.612 11 C 0.084 3.916 12 C -0.119 4.119 13 C -0.114 4.114 14 C 0.131 3.869 15 H 0.047 0.953 16 C 0.141 3.859 17 N -0.741 5.741 18 C -0.249 4.249 19 H 0.065 0.935 20 C -0.077 4.077 21 N -0.954 5.954 22 Si 0.970 3.030 23 H -0.275 1.275 24 H -0.294 1.294 25 H -0.283 1.283 26 C -0.083 4.083 27 C -0.100 4.100 28 C 0.129 3.871 29 N -0.501 5.501 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.176 0.824 34 H 0.155 0.845 35 H 0.123 0.877 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.121 0.879 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.012 0.988 43 H 0.028 0.972 44 H 0.389 0.611 45 H 0.244 0.756 46 H 0.169 0.831 47 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.778 -10.353 -13.242 25.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.005 3.995 3 C -0.189 4.189 4 C -0.083 4.083 5 C -0.134 4.134 6 C -0.063 4.063 7 C -0.138 4.138 8 C 0.334 3.666 9 O -0.407 6.407 10 N -0.347 5.347 11 C -0.037 4.037 12 C -0.156 4.156 13 C -0.152 4.152 14 C 0.027 3.973 15 H 0.065 0.935 16 C 0.014 3.986 17 N -0.391 5.391 18 C -0.382 4.382 19 H 0.083 0.917 20 C -0.270 4.270 21 N -0.604 5.604 22 Si 0.799 3.201 23 H -0.201 1.201 24 H -0.220 1.220 25 H -0.209 1.209 26 C -0.102 4.102 27 C -0.118 4.118 28 C 0.008 3.992 29 N -0.212 5.212 30 H 0.115 0.885 31 H 0.095 0.905 32 H 0.120 0.880 33 H 0.193 0.807 34 H 0.173 0.827 35 H 0.141 0.859 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.139 0.861 39 H 0.098 0.902 40 H 0.109 0.891 41 H 0.115 0.885 42 H 0.030 0.970 43 H 0.046 0.954 44 H 0.228 0.772 45 H 0.052 0.948 46 H 0.186 0.814 47 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -19.803 -10.655 -12.859 25.905 hybrid contribution 1.253 1.894 1.164 2.551 sum -18.551 -8.761 -11.695 23.615 Atomic orbital electron populations 1.20915 0.85671 1.04870 1.04591 1.22305 0.99094 0.87999 0.90088 1.22119 0.94251 1.00646 1.01855 1.21883 0.95625 0.97196 0.93560 1.18930 0.93516 0.95817 1.05161 1.21422 0.93243 0.97618 0.93989 1.19938 0.92146 0.95336 1.06405 1.18487 0.87884 0.82253 0.78001 1.90894 1.66800 1.37136 1.45841 1.48415 1.07952 1.17699 1.60630 1.22979 0.97394 0.86740 0.96576 1.22834 0.92244 1.03092 0.97459 1.22635 1.00334 0.92738 0.99487 1.21865 0.81017 0.99167 0.95239 0.93478 1.21238 0.97105 0.87221 0.93071 1.43125 1.83873 1.03450 1.08603 1.19552 1.38372 0.91864 0.88366 0.91678 1.25588 1.03959 0.95604 1.01830 1.69967 1.57368 0.97592 1.35509 0.85278 0.78222 0.76223 0.80403 1.20058 1.22045 1.20949 1.21674 0.93908 0.98334 0.96272 1.20911 0.93473 0.96981 1.00452 1.19234 0.89711 0.93324 0.96920 1.67962 1.07756 1.30003 1.15446 0.88467 0.90476 0.87959 0.80652 0.82693 0.85900 0.89335 0.89008 0.86067 0.90241 0.89084 0.88487 0.97039 0.95423 0.77161 0.94765 0.81440 0.81869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.12 10.14 71.24 0.72 -0.40 16 2 C 0.16 3.09 6.78 42.93 0.29 3.38 16 3 C -0.17 -3.03 9.64 22.14 0.21 -2.82 16 4 C -0.06 -1.33 9.89 22.53 0.22 -1.11 16 5 C -0.13 -3.90 5.74 -21.29 -0.12 -4.02 16 6 C -0.04 -1.49 9.34 22.82 0.21 -1.27 16 7 C -0.14 -4.70 5.70 -20.10 -0.11 -4.81 16 8 C 0.54 22.87 7.39 86.76 0.64 23.51 16 9 O -0.53 -29.13 13.08 -3.92 -0.05 -29.18 16 10 N -0.61 -20.51 3.06 -791.55 -2.43 -22.94 16 11 C 0.08 1.69 4.95 86.86 0.43 2.12 16 12 C -0.12 -1.77 7.08 31.99 0.23 -1.55 16 13 C -0.11 -2.39 6.43 31.78 0.20 -2.18 16 14 C 0.13 4.56 3.03 45.34 0.14 4.70 16 15 H 0.05 1.90 8.12 -2.39 -0.02 1.88 16 16 C 0.14 6.31 5.61 86.38 0.48 6.80 16 17 N -0.74 -43.42 4.51 -343.45 -1.55 -44.96 16 18 C -0.25 -15.71 9.99 84.03 0.84 -14.87 16 19 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 20 C -0.08 -4.95 5.50 84.86 0.47 -4.48 16 21 N -0.95 -65.38 13.06 21.65 0.28 -65.10 16 22 Si 0.97 50.75 29.55 68.60 2.03 52.78 16 23 H -0.27 -13.61 7.11 99.48 0.71 -12.90 16 24 H -0.29 -15.34 7.11 99.48 0.71 -14.63 16 25 H -0.28 -14.35 7.11 99.48 0.71 -13.65 16 26 C -0.08 -2.16 7.97 22.27 0.18 -1.98 16 27 C -0.10 -2.44 9.95 22.30 0.22 -2.22 16 28 C 0.13 3.61 6.61 40.35 0.27 3.88 16 29 N -0.50 -12.69 10.23 -176.58 -1.81 -14.49 16 30 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.10 0.61 8.07 -2.39 -0.02 0.59 16 33 H 0.18 1.71 8.06 -2.91 -0.02 1.69 16 34 H 0.16 3.07 8.06 -2.91 -0.02 3.04 16 35 H 0.12 4.65 7.79 -2.91 -0.02 4.63 16 36 H 0.09 1.47 6.82 -2.39 -0.02 1.46 16 37 H 0.09 1.62 6.74 -2.39 -0.02 1.60 16 38 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.09 1.73 7.86 -2.39 -0.02 1.71 16 41 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 42 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.03 1.19 8.08 -2.38 -0.02 1.18 16 44 H 0.39 24.79 4.88 -92.71 -0.45 24.34 16 45 H 0.24 16.15 8.31 -92.71 -0.77 15.37 16 46 H 0.17 3.42 4.32 -2.91 -0.01 3.41 16 47 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -91.12 378.40 2.55 -88.58 By element: Atomic # 1 Polarization: 32.10 SS G_CDS: 0.54 Total: 32.64 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: 5.52 Total: 2.68 kcal Atomic # 7 Polarization: -142.00 SS G_CDS: -5.50 Total: -147.49 kcal Atomic # 8 Polarization: -29.13 SS G_CDS: -0.05 Total: -29.18 kcal Atomic # 14 Polarization: 50.75 SS G_CDS: 2.03 Total: 52.78 kcal Total: -91.12 2.55 -88.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753601740.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.767 kcal (2) G-P(sol) polarization free energy of solvation -91.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds