Wall clock time and date at job start Sat Apr 11 2020 05:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.33217 * 126.01994 * 2 1 4 4 C 1.31541 * 109.75740 * 180.11459 * 3 2 1 5 5 O 1.35211 * 125.49119 * 179.88965 * 4 3 2 6 6 N 1.34942 * 109.01707 * 359.62156 * 4 3 2 7 7 H 0.97003 * 126.54577 * 180.24614 * 6 4 3 8 8 C 1.36717 * 126.01235 * 179.69460 * 2 1 3 9 9 C 1.46383 * 126.83026 * 0.02562 * 8 2 1 10 10 O 1.21739 * 119.99650 * 103.76892 * 9 8 2 11 11 N 1.34771 * 120.00180 * 283.76918 * 9 8 2 12 12 C 1.46505 * 119.99818 * 4.98386 * 11 9 8 13 13 C 1.46497 * 120.00465 * 184.98056 * 11 9 8 14 14 C 1.52992 * 109.47261 * 89.99727 * 13 11 9 15 15 N 1.46901 * 109.47385 * 180.02562 * 14 13 11 16 16 C 1.46899 * 111.00211 * 66.04741 * 15 14 13 17 17 C 1.46904 * 111.00041 * 190.00571 * 15 14 13 18 18 C 1.50697 * 109.46738 * 170.00246 * 17 15 14 19 19 O 1.21289 * 120.00499 * 359.97438 * 18 17 15 20 20 N 1.34777 * 119.99730 * 179.97438 * 18 17 15 21 21 C 1.37100 * 120.00337 * 179.97438 * 20 18 17 22 22 H 1.07999 * 119.99612 * 359.97438 * 21 20 18 23 23 C 1.38947 * 120.00495 * 179.97438 * 21 20 18 24 24 N 1.31415 * 119.99875 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00230 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46944 * 60.00052 * 25 23 21 27 27 H 1.48503 * 109.46890 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47303 * 299.99752 * 25 23 21 29 29 H 1.08993 * 109.47380 * 270.30941 * 1 2 3 30 30 H 1.09009 * 109.46686 * 30.30581 * 1 2 3 31 31 H 1.09000 * 109.47399 * 150.30509 * 1 2 3 32 32 H 0.96705 * 113.99655 * 269.69105 * 5 4 3 33 33 H 1.08994 * 109.47353 * 94.45034 * 12 11 9 34 34 H 1.09002 * 109.46822 * 214.44859 * 12 11 9 35 35 H 1.09002 * 109.47118 * 334.44353 * 12 11 9 36 36 H 1.08999 * 109.47303 * 210.00694 * 13 11 9 37 37 H 1.09011 * 109.46883 * 330.00082 * 13 11 9 38 38 H 1.08999 * 109.47752 * 300.00693 * 14 13 11 39 39 H 1.09006 * 109.47318 * 60.00507 * 14 13 11 40 40 H 1.09001 * 109.46895 * 59.99924 * 16 15 14 41 41 H 1.08994 * 109.47215 * 180.02562 * 16 15 14 42 42 H 1.08999 * 109.46809 * 300.00617 * 16 15 14 43 43 H 1.09003 * 109.46776 * 289.99473 * 17 15 14 44 44 H 1.08995 * 109.47430 * 49.99615 * 17 15 14 45 45 H 0.97006 * 119.99907 * 359.97438 * 20 18 17 46 46 H 0.96998 * 119.99966 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2904 1.0775 0.0000 4 6 3.5532 0.7091 -0.0025 5 8 4.6151 1.5461 -0.0053 6 7 3.6180 -0.6387 0.0043 7 1 4.4242 -1.1782 0.0076 8 6 2.3108 -1.1059 0.0059 9 6 1.8790 -2.5045 0.0128 10 8 1.9396 -3.1653 -1.0079 11 7 1.4144 -3.0607 1.1491 12 6 1.2385 -2.2382 2.3486 13 6 1.0851 -4.4878 1.1848 14 6 2.3216 -5.2862 1.6020 15 7 1.9916 -6.7173 1.6373 16 6 1.6883 -7.2209 0.2911 17 6 3.0745 -7.4922 2.2577 18 6 2.6067 -8.9040 2.5000 19 8 1.4818 -9.2324 2.1871 20 7 3.4384 -9.8020 3.0644 21 6 3.0128 -11.0864 3.2853 22 1 2.0108 -11.3785 3.0074 23 6 3.8703 -12.0122 3.8667 24 7 5.0896 -11.6569 4.2044 25 14 3.2901 -13.7620 4.1683 26 1 2.9100 -14.3871 2.8761 27 1 4.3855 -14.5458 4.7936 28 1 2.1138 -13.7442 5.0746 29 1 -0.3634 0.0055 1.0276 30 1 -0.3633 0.8873 -0.5186 31 1 -0.3634 -0.8927 -0.5091 32 1 4.9250 1.7852 -0.8896 33 1 0.2090 -1.8838 2.3985 34 1 1.4608 -2.8343 3.2337 35 1 1.9150 -1.3846 2.3062 36 1 0.2832 -4.6578 1.9033 37 1 0.7609 -4.8107 0.1954 38 1 3.1235 -5.1162 0.8836 39 1 2.6459 -4.9634 2.5914 40 1 2.5551 -7.0779 -0.3542 41 1 1.4471 -8.2824 0.3461 42 1 0.8374 -6.6759 -0.1176 43 1 3.9388 -7.5047 1.5937 44 1 3.3520 -7.0334 3.2067 45 1 4.3382 -9.5395 3.3143 46 1 5.6884 -12.3033 4.6099 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753855518.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:22 Heat of formation + Delta-G solvation = -29.285018 kcal Electronic energy + Delta-G solvation = -29073.033836 eV Core-core repulsion = 24807.146908 eV Total energy + Delta-G solvation = -4265.886928 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.73017 -40.01831 -38.61558 -37.88747 -36.80771 -35.56428 -33.86097 -33.74105 -31.59182 -31.24934 -29.94861 -27.84078 -27.64409 -26.83871 -25.31870 -24.21018 -22.86872 -21.79042 -20.97241 -20.07461 -19.30270 -19.09882 -17.95455 -17.84819 -17.12650 -16.69193 -16.24001 -16.09120 -15.51726 -15.23183 -14.82655 -14.59786 -14.45306 -14.19633 -13.94302 -13.66872 -13.45582 -13.37869 -13.32227 -13.04796 -12.92099 -12.86927 -12.59105 -12.39259 -12.13386 -12.07783 -11.52042 -11.33418 -11.25211 -10.93708 -10.88062 -10.85499 -10.55102 -10.44730 -10.30140 -10.22131 -9.47551 -9.11522 -8.78929 -8.45632 -7.99444 -7.88952 -6.42419 -3.83247 1.00250 1.62691 2.15439 2.49075 2.69834 3.19509 3.25218 3.29592 3.40554 3.89389 4.00753 4.11436 4.27205 4.39797 4.58807 4.76609 4.86370 4.97120 5.08679 5.11755 5.23897 5.26210 5.27124 5.36344 5.41252 5.43048 5.49870 5.62815 5.67187 5.74805 5.82436 5.93186 5.96042 6.01518 6.10857 6.19649 6.27042 6.57396 6.88738 7.07098 7.21858 7.32717 7.33701 7.54392 7.66140 8.05387 8.61013 9.17310 9.53503 10.05388 10.75276 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026047 B = 0.001850 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.702284 B =15132.579482 C =15646.904826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.074 3.926 3 N -0.479 5.479 4 C 0.398 3.602 5 O -0.440 6.440 6 N -0.544 5.544 7 H 0.426 0.574 8 C -0.061 4.061 9 C 0.593 3.407 10 O -0.518 6.518 11 N -0.599 5.599 12 C 0.076 3.924 13 C 0.116 3.884 14 C 0.042 3.958 15 N -0.515 5.515 16 C 0.020 3.980 17 C 0.047 3.953 18 C 0.444 3.556 19 O -0.577 6.577 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.903 5.903 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.273 1.273 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.407 0.593 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.031 0.969 39 H 0.073 0.927 40 H 0.015 0.985 41 H 0.097 0.903 42 H 0.062 0.938 43 H 0.047 0.953 44 H 0.087 0.913 45 H 0.392 0.608 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.101 25.778 -6.352 26.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.059 4.059 3 N -0.210 5.210 4 C 0.097 3.903 5 O -0.241 6.241 6 N -0.161 5.161 7 H 0.265 0.735 8 C -0.178 4.178 9 C 0.378 3.622 10 O -0.393 6.393 11 N -0.332 5.332 12 C -0.067 4.067 13 C -0.006 4.006 14 C -0.088 4.088 15 N -0.239 5.239 16 C -0.128 4.128 17 C -0.084 4.084 18 C 0.230 3.770 19 O -0.461 6.461 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.264 0.736 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.113 0.887 37 H 0.110 0.890 38 H 0.050 0.950 39 H 0.092 0.908 40 H 0.034 0.966 41 H 0.115 0.885 42 H 0.081 0.919 43 H 0.065 0.935 44 H 0.105 0.895 45 H 0.225 0.775 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.329 25.873 -6.118 26.794 hybrid contribution 2.297 -1.443 -0.517 2.762 sum -1.032 24.429 -6.636 25.336 Atomic orbital electron populations 1.20237 0.86357 1.03677 1.03203 1.20789 0.96550 0.86023 1.02552 1.70198 0.98566 1.30135 1.22112 1.20091 0.87361 0.78454 1.04354 1.84852 1.43311 1.61454 1.34505 1.43543 1.08361 1.07814 1.56364 0.73493 1.20453 0.83940 0.95169 1.18262 1.16837 0.78095 0.83725 0.83577 1.90905 1.54115 1.62358 1.31902 1.47756 1.64461 1.10112 1.10839 1.21906 1.02273 0.95510 0.87041 1.21592 0.97649 0.76956 1.04363 1.22424 0.96392 0.89109 1.00868 1.61515 1.40386 1.00320 1.21699 1.22595 0.99106 1.03878 0.87192 1.21858 0.92214 0.94661 0.99687 1.19698 0.86820 0.86169 0.84348 1.90484 1.20096 1.79789 1.55691 1.41862 1.14427 1.09931 1.53879 1.19649 1.00302 0.85368 1.37497 0.87932 1.25265 0.95206 1.00420 0.97103 1.69605 1.06148 1.36258 1.42392 0.85910 0.78030 0.81454 0.78780 1.19923 1.21012 1.19873 0.90263 0.90068 0.90721 0.73570 0.91631 0.90329 0.91087 0.88698 0.89021 0.95040 0.90829 0.96621 0.88473 0.91916 0.93513 0.89479 0.77525 0.91840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.23 36.01 0.37 -0.18 16 2 C 0.07 0.71 6.77 -82.54 -0.56 0.15 16 3 N -0.48 -5.00 11.22 -10.83 -0.12 -5.12 16 4 C 0.40 3.41 9.43 -89.59 -0.84 2.57 16 5 O -0.44 -2.69 13.62 -17.33 -0.24 -2.92 16 6 N -0.54 -4.33 6.24 -10.90 -0.07 -4.40 16 7 H 0.43 2.47 8.96 -40.82 -0.37 2.10 16 8 C -0.06 -0.60 5.09 -81.97 -0.42 -1.01 16 9 C 0.59 6.67 7.13 -12.99 -0.09 6.58 16 10 O -0.52 -7.74 16.66 5.15 0.09 -7.66 16 11 N -0.60 -5.68 2.87 -183.23 -0.53 -6.21 16 12 C 0.08 0.50 10.25 59.85 0.61 1.12 16 13 C 0.12 1.29 5.39 -4.05 -0.02 1.27 16 14 C 0.04 0.53 5.28 -3.83 -0.02 0.51 16 15 N -0.51 -8.46 4.50 -244.38 -1.10 -9.56 16 16 C 0.02 0.33 8.96 60.06 0.54 0.87 16 17 C 0.05 0.84 5.45 -4.98 -0.03 0.81 16 18 C 0.44 10.39 7.47 -10.99 -0.08 10.31 16 19 O -0.58 -15.32 13.91 5.55 0.08 -15.24 16 20 N -0.56 -14.21 5.29 -10.97 -0.06 -14.27 16 21 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 22 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.46 13.05 55.50 0.72 -23.74 16 25 Si 0.93 20.98 29.55 -169.99 -5.02 15.96 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.53 8.14 -51.92 -0.42 0.10 16 31 H 0.07 0.53 7.93 -51.93 -0.41 0.12 16 32 H 0.41 0.39 9.06 45.56 0.41 0.80 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.08 0.46 8.11 -51.93 -0.42 0.04 16 35 H 0.07 0.48 6.49 -51.93 -0.34 0.14 16 36 H 0.09 0.97 8.07 -51.93 -0.42 0.55 16 37 H 0.09 1.16 5.77 -51.92 -0.30 0.86 16 38 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 39 H 0.07 0.84 7.93 -51.93 -0.41 0.43 16 40 H 0.02 0.25 8.14 -51.93 -0.42 -0.18 16 41 H 0.10 1.94 5.82 -51.93 -0.30 1.64 16 42 H 0.06 0.93 6.47 -51.93 -0.34 0.59 16 43 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 44 H 0.09 1.38 7.93 -51.93 -0.41 0.97 16 45 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 46 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 389.60 15.07 5.87 5.87 Total: -1.00 -35.88 389.60 -6.83 -42.71 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -5.67 Total: 9.51 kcal Atomic # 6 Polarization: 15.84 SS G_CDS: -0.78 Total: 15.06 kcal Atomic # 7 Polarization: -62.14 SS G_CDS: -1.15 Total: -63.29 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -0.07 Total: -25.82 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.88 -6.83 -42.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753855518.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.423 kcal (2) G-P(sol) polarization free energy of solvation -35.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds