Wall clock time and date at job start Sat Apr 11 2020 05:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.33217 * 126.01994 * 2 1 4 4 C 1.31541 * 109.75740 * 180.11459 * 3 2 1 5 5 O 1.35211 * 125.49119 * 179.88965 * 4 3 2 6 6 N 1.34942 * 109.01707 * 359.62156 * 4 3 2 7 7 H 0.97003 * 126.54577 * 180.24614 * 6 4 3 8 8 C 1.36717 * 126.01235 * 179.69460 * 2 1 3 9 9 C 1.46383 * 126.83026 * 0.02562 * 8 2 1 10 10 O 1.21739 * 119.99650 * 103.76892 * 9 8 2 11 11 N 1.34771 * 120.00180 * 283.76918 * 9 8 2 12 12 C 1.46505 * 119.99818 * 4.98386 * 11 9 8 13 13 C 1.46497 * 120.00465 * 184.98056 * 11 9 8 14 14 C 1.52992 * 109.47261 * 89.99727 * 13 11 9 15 15 N 1.46901 * 109.47385 * 180.02562 * 14 13 11 16 16 C 1.46899 * 111.00211 * 66.04741 * 15 14 13 17 17 C 1.46904 * 111.00041 * 190.00571 * 15 14 13 18 18 C 1.50697 * 109.46738 * 170.00246 * 17 15 14 19 19 O 1.21289 * 120.00499 * 359.97438 * 18 17 15 20 20 N 1.34777 * 119.99730 * 179.97438 * 18 17 15 21 21 C 1.37100 * 120.00337 * 179.97438 * 20 18 17 22 22 H 1.07999 * 119.99612 * 359.97438 * 21 20 18 23 23 C 1.38947 * 120.00495 * 179.97438 * 21 20 18 24 24 N 1.31415 * 119.99875 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00230 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46944 * 60.00052 * 25 23 21 27 27 H 1.48503 * 109.46890 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47303 * 299.99752 * 25 23 21 29 29 H 1.08993 * 109.47380 * 270.30941 * 1 2 3 30 30 H 1.09009 * 109.46686 * 30.30581 * 1 2 3 31 31 H 1.09000 * 109.47399 * 150.30509 * 1 2 3 32 32 H 0.96705 * 113.99655 * 269.69105 * 5 4 3 33 33 H 1.08994 * 109.47353 * 94.45034 * 12 11 9 34 34 H 1.09002 * 109.46822 * 214.44859 * 12 11 9 35 35 H 1.09002 * 109.47118 * 334.44353 * 12 11 9 36 36 H 1.08999 * 109.47303 * 210.00694 * 13 11 9 37 37 H 1.09011 * 109.46883 * 330.00082 * 13 11 9 38 38 H 1.08999 * 109.47752 * 300.00693 * 14 13 11 39 39 H 1.09006 * 109.47318 * 60.00507 * 14 13 11 40 40 H 1.09001 * 109.46895 * 59.99924 * 16 15 14 41 41 H 1.08994 * 109.47215 * 180.02562 * 16 15 14 42 42 H 1.08999 * 109.46809 * 300.00617 * 16 15 14 43 43 H 1.09003 * 109.46776 * 289.99473 * 17 15 14 44 44 H 1.08995 * 109.47430 * 49.99615 * 17 15 14 45 45 H 0.97006 * 119.99907 * 359.97438 * 20 18 17 46 46 H 0.96998 * 119.99966 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2904 1.0775 0.0000 4 6 3.5532 0.7091 -0.0025 5 8 4.6151 1.5461 -0.0053 6 7 3.6180 -0.6387 0.0043 7 1 4.4242 -1.1782 0.0076 8 6 2.3108 -1.1059 0.0059 9 6 1.8790 -2.5045 0.0128 10 8 1.9396 -3.1653 -1.0079 11 7 1.4144 -3.0607 1.1491 12 6 1.2385 -2.2382 2.3486 13 6 1.0851 -4.4878 1.1848 14 6 2.3216 -5.2862 1.6020 15 7 1.9916 -6.7173 1.6373 16 6 1.6883 -7.2209 0.2911 17 6 3.0745 -7.4922 2.2577 18 6 2.6067 -8.9040 2.5000 19 8 1.4818 -9.2324 2.1871 20 7 3.4384 -9.8020 3.0644 21 6 3.0128 -11.0864 3.2853 22 1 2.0108 -11.3785 3.0074 23 6 3.8703 -12.0122 3.8667 24 7 5.0896 -11.6569 4.2044 25 14 3.2901 -13.7620 4.1683 26 1 2.9100 -14.3871 2.8761 27 1 4.3855 -14.5458 4.7936 28 1 2.1138 -13.7442 5.0746 29 1 -0.3634 0.0055 1.0276 30 1 -0.3633 0.8873 -0.5186 31 1 -0.3634 -0.8927 -0.5091 32 1 4.9250 1.7852 -0.8896 33 1 0.2090 -1.8838 2.3985 34 1 1.4608 -2.8343 3.2337 35 1 1.9150 -1.3846 2.3062 36 1 0.2832 -4.6578 1.9033 37 1 0.7609 -4.8107 0.1954 38 1 3.1235 -5.1162 0.8836 39 1 2.6459 -4.9634 2.5914 40 1 2.5551 -7.0779 -0.3542 41 1 1.4471 -8.2824 0.3461 42 1 0.8374 -6.6759 -0.1176 43 1 3.9388 -7.5047 1.5937 44 1 3.3520 -7.0334 3.2067 45 1 4.3382 -9.5395 3.3143 46 1 5.6884 -12.3033 4.6099 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753855518.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:21 Heat of formation + Delta-G solvation = -61.824772 kcal Electronic energy + Delta-G solvation = -29074.444866 eV Core-core repulsion = 24807.146908 eV Total energy + Delta-G solvation = -4267.297958 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.38784 -40.90223 -40.30184 -38.44344 -38.10566 -36.58895 -35.82124 -34.37329 -33.28001 -32.34210 -30.90728 -29.21028 -28.37568 -27.68144 -26.83421 -25.55077 -23.69173 -22.69026 -21.89909 -21.00779 -20.70707 -19.92985 -19.81395 -18.62678 -17.99589 -17.79284 -17.43715 -16.81540 -16.70493 -16.56267 -16.30188 -16.02013 -15.61708 -15.37509 -15.15986 -14.92008 -14.53375 -14.29024 -14.12218 -14.01056 -13.79313 -13.62146 -13.46035 -13.44900 -13.25786 -13.06687 -12.98525 -12.92550 -12.60751 -12.54698 -12.41381 -12.12395 -11.88257 -11.67393 -11.44706 -11.21100 -11.09040 -10.33797 -9.99702 -9.85648 -9.45015 -9.29922 -8.45684 -5.94143 0.35317 0.89986 1.40305 1.42134 1.47167 1.52914 1.76665 1.96123 2.05982 2.29786 2.77563 2.90220 3.21006 3.38996 3.44392 3.82577 3.90889 3.98832 4.06199 4.18108 4.26318 4.34523 4.44861 4.50120 4.54402 4.58055 4.61383 4.67423 4.76972 4.77836 4.84682 4.88887 4.90364 4.97292 5.18245 5.31071 5.41891 5.42287 5.75115 5.82624 6.02059 6.11728 6.13176 6.60921 6.61435 6.68913 6.84257 7.13860 7.57233 8.13041 8.71486 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026047 B = 0.001850 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.702284 B =15132.579482 C =15646.904826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.073 3.927 3 N -0.509 5.509 4 C 0.409 3.591 5 O -0.443 6.443 6 N -0.537 5.537 7 H 0.434 0.566 8 C -0.077 4.077 9 C 0.597 3.403 10 O -0.564 6.564 11 N -0.590 5.590 12 C 0.072 3.928 13 C 0.122 3.878 14 C 0.049 3.951 15 N -0.527 5.527 16 C 0.027 3.973 17 C 0.058 3.942 18 C 0.442 3.558 19 O -0.612 6.612 20 N -0.575 5.575 21 C -0.331 4.331 22 H 0.080 0.920 23 C -0.015 4.015 24 N -0.921 5.921 25 Si 0.993 3.007 26 H -0.273 1.273 27 H -0.271 1.271 28 H -0.271 1.271 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.429 0.571 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.108 0.892 37 H 0.074 0.926 38 H 0.025 0.975 39 H 0.094 0.906 40 H 0.020 0.980 41 H 0.060 0.940 42 H 0.078 0.922 43 H 0.062 0.938 44 H 0.114 0.886 45 H 0.396 0.604 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.735 27.163 -5.451 27.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.060 4.060 3 N -0.241 5.241 4 C 0.107 3.893 5 O -0.247 6.247 6 N -0.155 5.155 7 H 0.275 0.725 8 C -0.193 4.193 9 C 0.383 3.617 10 O -0.441 6.441 11 N -0.321 5.321 12 C -0.069 4.069 13 C 0.000 4.000 14 C -0.080 4.080 15 N -0.251 5.251 16 C -0.121 4.121 17 C -0.073 4.073 18 C 0.229 3.771 19 O -0.498 6.498 20 N -0.212 5.212 21 C -0.461 4.461 22 H 0.098 0.902 23 C -0.214 4.214 24 N -0.562 5.562 25 Si 0.816 3.184 26 H -0.198 1.198 27 H -0.196 1.196 28 H -0.196 1.196 29 H 0.116 0.884 30 H 0.103 0.897 31 H 0.090 0.910 32 H 0.291 0.709 33 H 0.102 0.898 34 H 0.110 0.890 35 H 0.090 0.910 36 H 0.126 0.874 37 H 0.092 0.908 38 H 0.044 0.956 39 H 0.112 0.888 40 H 0.038 0.962 41 H 0.079 0.921 42 H 0.097 0.903 43 H 0.080 0.920 44 H 0.132 0.868 45 H 0.229 0.771 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.932 27.298 -5.203 27.944 hybrid contribution 2.202 -1.745 -0.818 2.926 sum -0.730 25.553 -6.021 26.262 Atomic orbital electron populations 1.20321 0.85071 1.03699 1.04390 1.21146 0.97494 0.85717 1.01671 1.70211 0.99464 1.30731 1.23659 1.20167 0.87550 0.78780 1.02792 1.84813 1.42426 1.60846 1.36633 1.43475 1.08254 1.07777 1.56036 0.72452 1.20226 0.84734 0.94378 1.20003 1.17002 0.77465 0.84013 0.83254 1.90881 1.56120 1.63583 1.33548 1.47764 1.63383 1.09637 1.11335 1.22116 1.03502 0.95322 0.86007 1.21441 0.97226 0.77672 1.03687 1.22444 0.96944 0.86716 1.01899 1.61472 1.40211 1.02137 1.21310 1.22437 0.99988 1.01802 0.87826 1.21743 0.92751 0.91222 1.01556 1.20700 0.86016 0.87990 0.82351 1.90465 1.21733 1.80998 1.56578 1.41931 1.14875 1.09709 1.54712 1.19622 0.99940 0.87152 1.39352 0.90211 1.26038 0.95215 1.03866 0.96290 1.69668 1.06711 1.37522 1.42340 0.84990 0.77898 0.76858 0.78608 1.19810 1.19605 1.19616 0.88437 0.89655 0.91039 0.70862 0.89826 0.89043 0.90984 0.87362 0.90780 0.95622 0.88804 0.96190 0.92137 0.90309 0.92039 0.86770 0.77077 0.91358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.99 10.23 71.24 0.73 -0.26 16 2 C 0.07 1.31 6.77 41.99 0.28 1.59 16 3 N -0.51 -9.93 11.22 -301.66 -3.38 -13.32 16 4 C 0.41 6.36 9.43 179.99 1.70 8.06 16 5 O -0.44 -4.53 13.62 -84.92 -1.16 -5.69 16 6 N -0.54 -7.85 6.24 -300.13 -1.87 -9.72 16 7 H 0.43 4.47 8.96 -92.71 -0.83 3.64 16 8 C -0.08 -1.41 5.09 39.80 0.20 -1.20 16 9 C 0.60 12.90 7.13 86.36 0.62 13.51 16 10 O -0.56 -16.85 16.66 -4.47 -0.07 -16.92 16 11 N -0.59 -10.14 2.87 -851.82 -2.45 -12.59 16 12 C 0.07 0.76 10.25 127.77 1.31 2.07 16 13 C 0.12 2.51 5.39 86.38 0.47 2.97 16 14 C 0.05 1.14 5.28 86.30 0.46 1.59 16 15 N -0.53 -16.67 4.50 -927.07 -4.17 -20.84 16 16 C 0.03 0.92 8.96 127.69 1.14 2.06 16 17 C 0.06 2.00 5.45 85.56 0.47 2.47 16 18 C 0.44 20.85 7.47 87.66 0.66 21.50 16 19 O -0.61 -33.30 13.91 -3.06 -0.04 -33.35 16 20 N -0.57 -29.32 5.29 -306.99 -1.62 -30.95 16 21 C -0.33 -18.70 9.68 84.04 0.81 -17.89 16 22 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 23 C -0.01 -0.77 5.50 84.93 0.47 -0.31 16 24 N -0.92 -49.58 13.05 21.66 0.28 -49.30 16 25 Si 0.99 42.83 29.55 68.60 2.03 44.86 16 26 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 27 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 28 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 29 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.07 0.95 7.93 -2.39 -0.02 0.93 16 32 H 0.43 -0.09 9.06 -74.05 -0.67 -0.76 16 33 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.09 0.77 8.11 -2.39 -0.02 0.75 16 35 H 0.07 0.80 6.49 -2.39 -0.02 0.78 16 36 H 0.11 1.95 8.07 -2.39 -0.02 1.93 16 37 H 0.07 1.82 5.77 -2.38 -0.01 1.81 16 38 H 0.03 0.65 8.12 -2.39 -0.02 0.63 16 39 H 0.09 1.83 7.93 -2.38 -0.02 1.81 16 40 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.06 2.48 5.82 -2.39 -0.01 2.47 16 42 H 0.08 2.33 6.47 -2.39 -0.02 2.31 16 43 H 0.06 1.96 8.12 -2.39 -0.02 1.94 16 44 H 0.11 3.32 7.93 -2.39 -0.02 3.30 16 45 H 0.40 19.17 7.90 -92.70 -0.73 18.43 16 46 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 Total: -1.00 -78.40 389.60 -4.33 -82.74 By element: Atomic # 1 Polarization: 30.07 SS G_CDS: -1.17 Total: 28.90 kcal Atomic # 6 Polarization: 26.88 SS G_CDS: 9.31 Total: 36.19 kcal Atomic # 7 Polarization: -123.50 SS G_CDS: -13.22 Total: -136.72 kcal Atomic # 8 Polarization: -54.69 SS G_CDS: -1.27 Total: -55.96 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -78.40 -4.33 -82.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753855518.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.912 kcal (2) G-P(sol) polarization free energy of solvation -78.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds