Wall clock time and date at job start Sat Apr 11 2020 05:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46901 * 2 1 4 4 H 1.08997 * 109.47017 * 305.58299 * 3 2 1 5 5 N 1.46896 * 109.47600 * 65.58771 * 3 2 1 6 6 C 1.39204 * 111.00122 * 267.76063 * 5 3 2 7 7 C 1.36175 * 126.22243 * 125.01213 * 6 5 3 8 8 N 1.48030 * 126.09131 * 359.97438 * 7 6 5 9 9 O 1.21808 * 120.00005 * 90.00216 * 8 7 6 10 10 O 1.21794 * 120.00128 * 269.99746 * 8 7 6 11 11 C 1.39775 * 107.81209 * 179.84531 * 7 6 5 12 12 C 1.50704 * 125.83720 * 180.16384 * 11 7 6 13 13 N 1.30841 * 108.32333 * 0.42601 * 11 7 6 14 14 N 1.35252 * 126.22181 * 305.32331 * 6 5 3 15 15 C 1.46502 * 126.04103 * 0.02562 * 14 6 5 16 16 C 1.50706 * 109.46888 * 185.59166 * 3 2 1 17 17 O 1.21286 * 119.99643 * 239.99575 * 16 3 2 18 18 N 1.34768 * 120.00443 * 59.99557 * 16 3 2 19 19 C 1.46498 * 120.00034 * 179.72494 * 18 16 3 20 20 C 1.53011 * 109.46910 * 180.27437 * 19 18 16 21 21 C 1.50701 * 109.46772 * 180.02562 * 20 19 18 22 22 H 1.08004 * 120.00293 * 0.02562 * 21 20 19 23 23 C 1.37875 * 119.99517 * 180.02562 * 21 20 19 24 24 N 1.31513 * 120.00397 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99548 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47149 * 90.00159 * 25 23 21 27 27 H 1.48503 * 109.46879 * 209.99986 * 25 23 21 28 28 H 1.48499 * 109.47356 * 330.00120 * 25 23 21 29 29 H 1.08996 * 109.47697 * 301.22554 * 1 2 3 30 30 H 1.09004 * 109.46750 * 61.22813 * 1 2 3 31 31 H 1.09003 * 109.47141 * 181.22531 * 1 2 3 32 32 H 1.08995 * 109.47035 * 239.99507 * 2 1 3 33 33 H 1.08998 * 109.46952 * 119.99758 * 2 1 3 34 34 H 1.00903 * 110.99861 * 31.71029 * 5 3 2 35 35 H 1.08997 * 109.46833 * 270.32944 * 12 11 7 36 36 H 1.08999 * 109.46992 * 30.33285 * 12 11 7 37 37 H 1.08999 * 109.47170 * 150.33040 * 12 11 7 38 38 H 1.08997 * 109.47003 * 86.88987 * 15 14 6 39 39 H 1.08993 * 109.47152 * 206.89206 * 15 14 6 40 40 H 1.09004 * 109.47246 * 326.89357 * 15 14 6 41 41 H 0.97005 * 119.99591 * 0.02562 * 18 16 3 42 42 H 1.09000 * 109.47225 * 300.27624 * 19 18 16 43 43 H 1.09001 * 109.46971 * 60.28222 * 19 18 16 44 44 H 1.09000 * 109.47329 * 300.00124 * 20 19 18 45 45 H 1.09001 * 109.46662 * 60.00596 * 20 19 18 46 46 H 0.97000 * 119.99648 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5973 1.9843 -0.8358 5 7 1.6636 2.0950 1.2611 6 6 0.4434 2.7536 1.1373 7 6 -0.6523 2.5725 1.9252 8 7 -0.7595 1.6382 3.0684 9 8 -0.4610 2.0103 4.1892 10 8 -1.1464 0.4974 2.8884 11 6 -1.6567 3.4282 1.4641 12 6 -3.0401 3.5599 2.0472 13 7 -1.1924 4.0912 0.4361 14 7 0.1287 3.6853 0.2088 15 6 1.0132 4.1819 -0.8483 16 6 3.5407 1.4447 -0.1384 17 8 4.2288 1.9411 0.7282 18 7 4.1180 0.8953 -1.2252 19 6 5.5765 0.9029 -1.3625 20 6 5.9683 0.2281 -2.6787 21 6 7.4687 0.2354 -2.8197 22 1 8.0816 0.6767 -2.0476 23 6 8.0590 -0.3214 -3.9344 24 7 7.3128 -0.8583 -4.8748 25 14 9.9189 -0.3130 -4.1088 26 1 10.4785 -1.5474 -3.5020 27 1 10.2808 -0.2609 -5.5481 28 1 10.4758 0.8760 -3.4150 29 1 -0.3634 0.5327 0.8787 30 1 -0.3633 0.4947 -0.9008 31 1 -0.3633 -1.0275 0.0220 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6401 1.4298 2.0195 35 1 -3.7091 2.8512 1.5591 36 1 -3.0054 3.3497 3.1162 37 1 -3.4064 4.5741 1.8881 38 1 0.9375 3.5323 -1.7203 39 1 0.7182 5.1946 -1.1229 40 1 2.0420 4.1882 -0.4881 41 1 3.5676 0.4986 -1.9185 42 1 5.9363 1.9318 -1.3605 43 1 6.0228 0.3601 -0.5292 44 1 5.6085 -0.8008 -2.6808 45 1 5.5221 0.7708 -3.5121 46 1 7.7282 -1.2503 -5.6588 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345158210.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:39 Heat of formation + Delta-G solvation = 38.588277 kcal Electronic energy + Delta-G solvation = -30273.267576 eV Core-core repulsion = 26010.323854 eV Total energy + Delta-G solvation = -4262.943721 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.94790 -41.70107 -39.96294 -37.40163 -36.66900 -35.07728 -34.69784 -33.34789 -32.76350 -30.79387 -30.11200 -29.92383 -27.73689 -26.63737 -25.07884 -24.60708 -22.58451 -21.80355 -21.31223 -20.82361 -20.19866 -19.29582 -18.97114 -17.87705 -17.35764 -17.03545 -16.54921 -16.31280 -16.04535 -15.66046 -15.14930 -14.86221 -14.60108 -14.47829 -14.20702 -13.91678 -13.79195 -13.50308 -13.33670 -13.01590 -12.91651 -12.65753 -12.39768 -12.38769 -12.10239 -11.87684 -11.65889 -11.43955 -11.33268 -11.27573 -11.21960 -11.12797 -11.11700 -10.73535 -10.47382 -9.94615 -9.76292 -9.60256 -9.33914 -8.97108 -8.73929 -8.49747 -6.19309 -4.22666 0.30548 0.83048 0.94125 1.56823 1.76245 2.60857 2.72327 3.22953 3.29569 3.32940 3.47863 3.70284 3.91413 4.22770 4.26356 4.27780 4.33454 4.54921 4.57378 4.63703 4.73910 4.95647 4.98447 4.99252 4.99698 5.15707 5.18164 5.20817 5.28579 5.55139 5.60157 5.63107 5.83281 6.01324 6.10206 6.15343 6.17652 6.28018 6.55830 6.66547 6.81314 7.37265 7.42002 7.46934 7.72321 7.78474 8.14662 8.35679 8.83078 9.42997 10.92144 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022559 B = 0.002297 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.887883 B =12186.843290 C =12502.230424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.151 4.151 3 C 0.059 3.941 4 H 0.111 0.889 5 N -0.582 5.582 6 C 0.370 3.630 7 C -0.241 4.241 8 N 0.051 4.949 9 O -0.136 6.136 10 O -0.137 6.137 11 C 0.146 3.854 12 C -0.086 4.086 13 N -0.266 5.266 14 N -0.357 5.357 15 C 0.091 3.909 16 C 0.508 3.492 17 O -0.522 6.522 18 N -0.717 5.717 19 C 0.122 3.878 20 C 0.013 3.987 21 C -0.524 4.524 22 H 0.060 0.940 23 C 0.060 3.940 24 N -0.894 5.894 25 Si 0.897 3.103 26 H -0.279 1.279 27 H -0.285 1.285 28 H -0.272 1.272 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.385 0.615 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.107 0.893 40 H 0.102 0.898 41 H 0.397 0.603 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.023 0.977 45 H 0.022 0.978 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.369 6.627 8.835 24.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.190 4.190 3 C -0.052 4.052 4 H 0.129 0.871 5 N -0.212 5.212 6 C 0.138 3.862 7 C -0.339 4.339 8 N 0.582 4.418 9 O -0.359 6.359 10 O -0.359 6.359 11 C -0.024 4.024 12 C -0.144 4.144 13 N -0.088 5.088 14 N -0.141 5.141 15 C -0.049 4.049 16 C 0.291 3.709 17 O -0.398 6.398 18 N -0.368 5.368 19 C 0.001 3.999 20 C -0.024 4.024 21 C -0.562 4.562 22 H 0.078 0.922 23 C -0.142 4.142 24 N -0.532 5.532 25 Si 0.725 3.275 26 H -0.205 1.205 27 H -0.211 1.211 28 H -0.197 1.197 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.112 0.888 33 H 0.100 0.900 34 H 0.212 0.788 35 H 0.110 0.890 36 H 0.099 0.901 37 H 0.110 0.890 38 H 0.104 0.896 39 H 0.125 0.875 40 H 0.120 0.880 41 H 0.231 0.769 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.041 0.959 45 H 0.041 0.959 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.453 8.839 7.543 23.524 hybrid contribution 0.627 -1.653 0.333 1.799 sum -19.826 7.186 7.876 22.511 Atomic orbital electron populations 1.22068 0.94016 1.03887 1.02494 1.22252 0.97513 0.93952 1.05261 1.22081 0.96056 0.96318 0.90712 0.87147 1.56450 1.22142 1.33995 1.08610 1.18345 0.87272 0.91055 0.89540 1.20174 0.98295 1.11719 1.03679 1.42519 0.97759 1.00411 1.01161 1.94586 1.50526 1.81747 1.09091 1.94533 1.46721 1.03532 1.91140 1.21918 0.96305 0.91655 0.92481 1.20423 0.88355 1.04902 1.00758 1.77673 0.90020 1.22928 1.18172 1.48202 1.11083 1.29843 1.24951 1.22294 0.92809 1.02213 0.87553 1.19983 0.88397 0.79519 0.83016 1.90739 1.63947 1.44662 1.40409 1.46326 1.10104 1.58848 1.21557 1.21796 0.75763 1.01170 1.01216 1.19327 0.97257 0.95870 0.89961 1.21023 0.91145 1.38716 1.05344 0.92218 1.24992 0.98593 0.94996 0.95638 1.69944 1.35363 1.38540 1.09380 0.86506 0.85092 0.78647 0.77296 1.20484 1.21117 1.19707 0.91749 0.92715 0.90744 0.88795 0.89999 0.78827 0.88980 0.90101 0.89028 0.89552 0.87472 0.88000 0.76896 0.92347 0.92296 0.95894 0.95948 0.92758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.48 9.33 37.16 0.35 -1.14 16 2 C -0.15 -1.39 5.28 -26.73 -0.14 -1.53 16 3 C 0.06 0.62 2.14 -68.87 -0.15 0.48 16 4 H 0.11 0.97 4.96 -51.93 -0.26 0.71 16 5 N -0.58 -6.76 5.75 -54.83 -0.32 -7.07 16 6 C 0.37 4.11 5.25 -153.41 -0.81 3.31 16 7 C -0.24 -2.74 5.30 -80.11 -0.42 -3.17 16 8 N 0.05 0.62 4.10 33.88 0.14 0.76 16 9 O -0.14 -1.81 19.26 -29.46 -0.57 -2.37 16 10 O -0.14 -1.68 17.40 -29.46 -0.51 -2.19 16 11 C 0.15 1.48 7.21 -82.44 -0.59 0.89 16 12 C -0.09 -0.59 10.44 36.01 0.38 -0.21 16 13 N -0.27 -2.82 12.56 33.65 0.42 -2.40 16 14 N -0.36 -3.60 3.96 -67.24 -0.27 -3.87 16 15 C 0.09 0.67 9.68 59.85 0.58 1.25 16 16 C 0.51 7.37 7.22 -10.99 -0.08 7.29 16 17 O -0.52 -9.74 16.43 5.55 0.09 -9.65 16 18 N -0.72 -10.69 5.41 -60.29 -0.33 -11.01 16 19 C 0.12 2.37 5.61 -4.04 -0.02 2.34 16 20 C 0.01 0.31 5.09 -27.88 -0.14 0.16 16 21 C -0.52 -13.89 9.11 -34.44 -0.31 -14.20 16 22 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 23 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 24 N -0.89 -25.19 13.29 55.43 0.74 -24.45 16 25 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 28 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 29 H 0.06 0.64 2.99 -51.93 -0.16 0.49 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 0.79 7.41 -51.93 -0.38 0.40 16 33 H 0.08 0.79 8.01 -51.93 -0.42 0.38 16 34 H 0.38 4.54 7.91 -39.29 -0.31 4.23 16 35 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.09 0.48 7.23 -51.93 -0.38 0.11 16 39 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.10 0.83 7.94 -51.93 -0.41 0.42 16 41 H 0.40 4.96 7.83 -40.82 -0.32 4.64 16 42 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 387.91 15.07 5.85 5.85 Total: -1.00 -32.32 387.91 -7.64 -39.96 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -6.40 Total: 3.75 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -1.47 Total: -3.01 kcal Atomic # 7 Polarization: -48.44 SS G_CDS: 0.39 Total: -48.05 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: -0.99 Total: -14.21 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.32 -7.64 -39.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345158210.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.545 kcal (2) G-P(sol) polarization free energy of solvation -32.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds