Wall clock time and date at job start Sat Apr 11 2020 05:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47032 * 217.65839 * 3 2 1 5 5 C 1.36882 * 120.00023 * 273.44068 * 4 3 2 6 6 H 1.08000 * 119.99972 * 194.68404 * 5 4 3 7 7 C 1.39009 * 119.99788 * 14.68986 * 5 4 3 8 8 N 1.31392 * 120.00328 * 13.05659 * 7 5 4 9 9 Si 1.86802 * 120.00106 * 193.05882 * 7 5 4 10 10 H 1.48506 * 109.46921 * 89.99893 * 9 7 5 11 11 H 1.48493 * 109.47514 * 209.99877 * 9 7 5 12 12 H 1.48508 * 109.46967 * 330.00311 * 9 7 5 13 13 C 1.34780 * 120.00245 * 93.44779 * 4 3 2 14 14 O 1.21713 * 120.00279 * 175.33862 * 13 4 3 15 15 C 1.46830 * 119.99631 * 355.33105 * 13 4 3 16 16 C 1.43198 * 119.99844 * 255.21712 * 15 13 4 17 17 N 4.37340 * 89.69567 * 280.06218 * 2 1 3 18 18 C 1.38168 * 119.99702 * 75.22221 * 15 13 4 19 19 C 1.41813 * 120.00547 * 6.66701 * 18 15 13 20 20 C 1.46967 * 127.08135 * 17.97980 * 19 18 15 21 21 C 1.34332 * 106.38857 * 179.74150 * 20 19 18 22 22 C 1.50701 * 125.38260 * 180.02562 * 21 20 19 23 23 N 1.36532 * 109.23493 * 0.02562 * 21 20 19 24 24 C 1.46501 * 124.77025 * 179.97438 * 23 21 20 25 25 C 1.52993 * 109.47534 * 90.02115 * 24 23 21 26 26 C 1.53007 * 109.47322 * 179.97438 * 25 24 23 27 27 C 1.34591 * 110.45467 * 359.97438 * 23 21 20 28 28 C 1.50701 * 125.95615 * 180.02562 * 27 23 21 29 29 H 4.40641 * 5.51533 * 179.97438 * 4 1 2 30 30 H 1.08999 * 109.47411 * 97.65809 * 3 2 1 31 31 H 1.09001 * 109.47446 * 337.65820 * 3 2 1 32 32 H 0.96997 * 120.00394 * 179.97438 * 8 7 5 33 33 H 1.08003 * 119.99771 * 186.66831 * 18 15 13 34 34 H 1.08002 * 126.80969 * 359.72160 * 20 19 18 35 35 H 1.08994 * 109.47047 * 89.97604 * 22 21 20 36 36 H 1.08998 * 109.47178 * 209.97832 * 22 21 20 37 37 H 1.09005 * 109.46551 * 329.97476 * 22 21 20 38 38 H 1.09007 * 109.47116 * 210.02383 * 24 23 21 39 39 H 1.09000 * 109.47025 * 330.01256 * 24 23 21 40 40 H 1.09001 * 109.47325 * 299.99825 * 25 24 23 41 41 H 1.09000 * 109.47120 * 60.00305 * 25 24 23 42 42 H 1.08995 * 109.47277 * 180.02562 * 26 25 24 43 43 H 1.09001 * 109.46813 * 300.00181 * 26 25 24 44 44 H 1.08995 * 109.47281 * 59.99658 * 26 25 24 45 45 H 1.09000 * 109.47341 * 269.98308 * 28 27 23 46 46 H 1.09003 * 109.47295 * 29.98692 * 28 27 23 47 47 H 1.08998 * 109.47176 * 149.98382 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.0943 0.8438 5 6 3.2943 2.3470 0.3158 6 1 3.8674 3.0894 0.8513 7 6 2.7195 2.6635 -0.9097 8 7 1.8198 1.8655 -1.4391 9 14 3.2262 4.2232 -1.8040 10 1 4.3744 3.9298 -2.6990 11 1 2.0849 4.7241 -2.6112 12 1 3.6225 5.2556 -0.8128 13 6 3.4247 0.8672 2.1401 14 8 3.9097 1.7531 2.8193 15 6 3.1563 -0.4491 2.7329 16 6 2.0383 -0.6247 3.6102 17 7 1.1508 -0.7641 4.3061 18 6 3.9827 -1.5181 2.4443 19 6 5.1677 -1.3156 1.6921 20 6 5.8600 -0.0410 1.4553 21 6 6.9328 -0.3272 0.6990 22 6 7.9446 0.6745 0.2053 23 7 6.9614 -1.6690 0.4484 24 6 7.9876 -2.3489 -0.3459 25 6 9.1307 -2.7918 0.5694 26 6 10.2022 -3.5024 -0.2601 27 6 5.9142 -2.2792 1.0337 28 6 5.6074 -3.7538 0.9821 29 1 -1.0503 -0.0001 -0.0003 30 1 3.0093 0.1378 -1.0185 31 1 3.0098 -0.9497 0.3906 32 1 1.4184 2.0866 -2.2940 33 1 3.7262 -2.5081 2.7917 34 1 5.5648 0.9328 1.8172 35 1 8.7480 0.7697 0.9357 36 1 8.3563 0.3365 -0.7457 37 1 7.4612 1.6419 0.0686 38 1 7.5519 -3.2220 -0.8317 39 1 8.3724 -1.6660 -1.1034 40 1 9.5665 -1.9187 1.0551 41 1 8.7459 -3.4748 1.3268 42 1 11.0164 -3.8184 0.3921 43 1 9.7662 -4.3756 -0.7454 44 1 10.5871 -2.8200 -1.0178 45 1 4.9733 -3.9631 0.1206 46 1 6.5373 -4.3156 0.8938 47 1 5.0897 -4.0493 1.8946 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490880257.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:58 Heat of formation + Delta-G solvation = 125.605136 kcal Electronic energy + Delta-G solvation = -30089.704818 eV Core-core repulsion = 26241.383694 eV Total energy + Delta-G solvation = -3848.321124 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.23176 -38.86471 -36.06380 -35.41039 -35.05777 -33.61137 -32.38445 -31.71970 -31.11223 -30.30509 -29.03303 -26.47318 -26.26233 -25.22259 -24.31039 -22.70014 -21.89590 -20.41770 -19.84646 -17.97110 -17.82582 -16.95771 -16.38478 -16.24298 -15.62164 -15.29230 -15.11541 -14.42942 -14.26317 -14.03444 -13.86234 -13.58085 -13.38566 -13.13871 -13.04567 -12.84990 -12.72792 -12.58691 -12.43930 -12.31341 -12.20692 -12.14721 -12.10287 -11.84414 -11.76303 -11.50320 -11.33447 -11.19566 -11.13195 -11.02722 -10.92412 -10.45610 -10.33794 -9.62163 -9.33199 -9.12052 -8.68162 -8.41214 -7.94132 -7.77497 -7.14926 -6.23548 -3.83068 1.10387 2.57867 2.95308 3.09533 3.21324 3.26201 3.31557 3.39626 3.76490 3.92592 4.16246 4.20823 4.36997 4.43203 4.53372 4.66154 4.71741 4.91352 4.93339 5.02011 5.08171 5.14252 5.17309 5.25833 5.33274 5.42305 5.47371 5.57932 5.61358 5.64117 5.73937 5.74842 5.76999 5.86030 5.91949 5.95568 6.15102 6.32269 6.49736 6.55175 6.72015 6.82931 6.95677 7.24270 7.31719 7.47582 7.55915 7.57073 8.02715 8.15022 8.45389 9.08145 9.13435 9.37397 9.92265 10.69221 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009683 B = 0.004778 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2891.032499 B = 5858.764517 C = 7370.065303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 C -0.092 4.092 3 C 0.239 3.761 4 N -0.419 5.419 5 C -0.304 4.304 6 H 0.108 0.892 7 C 0.030 3.970 8 N -0.863 5.863 9 Si 0.926 3.074 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.269 1.269 13 C 0.508 3.492 14 O -0.581 6.581 15 C -0.110 4.110 16 C 0.280 3.720 17 N -0.446 5.446 18 C 0.037 3.963 19 C -0.180 4.180 20 C -0.135 4.135 21 C -0.002 4.002 22 C -0.080 4.080 23 N -0.432 5.432 24 C 0.098 3.902 25 C -0.140 4.140 26 C -0.150 4.150 27 C 0.065 3.935 28 C -0.089 4.089 29 H 0.193 0.807 30 H 0.106 0.894 31 H 0.064 0.936 32 H 0.268 0.732 33 H 0.126 0.874 34 H 0.167 0.833 35 H 0.064 0.936 36 H 0.056 0.944 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.059 0.941 43 H 0.056 0.944 44 H 0.057 0.943 45 H 0.077 0.923 46 H 0.064 0.936 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.908 -13.317 -3.495 20.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 C -0.094 4.094 3 C 0.116 3.884 4 N -0.134 5.134 5 C -0.431 4.431 6 H 0.125 0.875 7 C -0.174 4.174 8 N -0.501 5.501 9 Si 0.753 3.247 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.193 1.193 13 C 0.296 3.704 14 O -0.467 6.467 15 C -0.118 4.118 16 C -0.034 4.034 17 N -0.123 5.123 18 C 0.013 3.987 19 C -0.187 4.187 20 C -0.157 4.157 21 C -0.108 4.108 22 C -0.138 4.138 23 N -0.107 5.107 24 C -0.024 4.024 25 C -0.178 4.178 26 C -0.208 4.208 27 C -0.051 4.051 28 C -0.146 4.146 29 H 0.210 0.790 30 H 0.123 0.877 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.144 0.856 34 H 0.184 0.816 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.103 0.897 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.095 0.905 46 H 0.083 0.917 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 13.962 -13.143 -2.534 19.342 hybrid contribution -0.012 0.814 -1.002 1.291 sum 13.950 -12.329 -3.536 18.951 Atomic orbital electron populations 1.24115 0.95265 1.05469 1.04988 1.22979 0.94194 0.95783 0.96424 1.18334 0.84196 0.88609 0.97236 1.43514 1.54442 1.09031 1.06446 1.19714 1.31248 0.89351 1.02795 0.87478 1.25329 0.95027 0.99161 0.97852 1.69982 1.24051 1.37380 1.18687 0.85920 0.77957 0.81492 0.79340 1.20399 1.21121 1.19347 1.17061 0.85217 0.86106 0.82050 1.90666 1.49331 1.45778 1.60926 1.18237 0.94043 0.97261 1.02240 1.25417 0.92469 0.92860 0.92641 1.81106 1.10810 1.08752 1.11649 1.20849 0.90036 0.96147 0.91714 1.18336 0.98592 0.93217 1.08600 1.22706 0.94246 0.98497 1.00270 1.20123 1.01541 0.82800 1.06327 1.20285 0.96378 0.97385 0.99706 1.43442 1.20165 1.06688 1.40447 1.21906 0.88397 0.98153 0.93901 1.21907 0.95729 1.01403 0.98746 1.21704 0.98439 1.00460 1.00154 1.20676 0.90065 0.94478 0.99873 1.20407 1.02019 0.88468 1.03742 0.78956 0.87667 0.91787 0.92040 0.85648 0.81555 0.91741 0.92466 0.89696 0.89448 0.89221 0.91057 0.91252 0.92144 0.92449 0.92377 0.90478 0.91733 0.89885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -6.34 19.16 29.55 0.57 -5.77 16 2 C -0.09 -2.18 10.95 -37.13 -0.41 -2.58 16 3 C 0.24 5.39 4.93 -6.83 -0.03 5.36 16 4 N -0.42 -10.30 2.24 -119.37 -0.27 -10.57 16 5 C -0.30 -8.01 9.43 -15.01 -0.14 -8.15 16 6 H 0.11 2.95 7.27 -52.49 -0.38 2.57 16 7 C 0.03 0.76 5.14 -17.45 -0.09 0.67 16 8 N -0.86 -22.14 8.39 55.50 0.47 -21.67 16 9 Si 0.93 20.10 29.57 -169.99 -5.03 15.07 16 10 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 11 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 12 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 13 C 0.51 12.32 3.91 -12.78 -0.05 12.27 16 14 O -0.58 -15.86 15.42 5.18 0.08 -15.78 16 15 C -0.11 -2.26 4.52 -104.52 -0.47 -2.73 16 16 C 0.28 5.97 15.36 -22.46 -0.35 5.63 16 17 N -0.45 -9.83 18.54 41.85 0.78 -9.06 16 18 C 0.04 0.61 8.16 -38.24 -0.31 0.29 16 19 C -0.18 -2.90 5.03 -104.88 -0.53 -3.43 16 20 C -0.13 -2.44 9.13 -37.43 -0.34 -2.78 16 21 C 0.00 -0.03 6.84 -81.88 -0.56 -0.59 16 22 C -0.08 -0.97 10.04 36.01 0.36 -0.61 16 23 N -0.43 -5.25 2.68 -107.50 -0.29 -5.54 16 24 C 0.10 0.81 5.36 -4.04 -0.02 0.79 16 25 C -0.14 -0.98 6.26 -26.73 -0.17 -1.15 16 26 C -0.15 -0.78 9.91 37.16 0.37 -0.42 16 27 C 0.07 0.83 6.95 -81.27 -0.56 0.27 16 28 C -0.09 -0.77 9.63 36.01 0.35 -0.42 16 29 H 0.19 3.72 7.80 -54.08 -0.42 3.30 16 30 H 0.11 2.49 6.62 -51.93 -0.34 2.15 16 31 H 0.06 1.27 5.01 -51.93 -0.26 1.01 16 32 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 33 H 0.13 1.58 7.53 -52.48 -0.40 1.18 16 34 H 0.17 3.63 5.08 -52.49 -0.27 3.36 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.57 6.92 -51.93 -0.36 0.21 16 37 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.09 0.60 7.49 -51.93 -0.39 0.21 16 39 H 0.09 0.69 6.88 -51.93 -0.36 0.33 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 44 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 45 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.06 0.43 7.59 -51.93 -0.39 0.04 16 47 H 0.08 0.64 7.52 -51.93 -0.39 0.25 16 LS Contribution 398.00 15.07 6.00 6.00 Total: -1.00 -32.63 398.00 -7.13 -39.76 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -6.48 Total: 5.14 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -2.39 Total: -3.34 kcal Atomic # 7 Polarization: -47.53 SS G_CDS: 0.69 Total: -46.84 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: 0.08 Total: -15.78 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.03 Total: 15.07 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.63 -7.13 -39.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490880257.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.364 kcal (2) G-P(sol) polarization free energy of solvation -32.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds