Wall clock time and date at job start Sat Apr 11 2020 05:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47032 * 217.65839 * 3 2 1 5 5 C 1.36882 * 120.00023 * 273.44068 * 4 3 2 6 6 H 1.08000 * 119.99972 * 194.68404 * 5 4 3 7 7 C 1.39009 * 119.99788 * 14.68986 * 5 4 3 8 8 N 1.31392 * 120.00328 * 13.05659 * 7 5 4 9 9 Si 1.86802 * 120.00106 * 193.05882 * 7 5 4 10 10 H 1.48506 * 109.46921 * 89.99893 * 9 7 5 11 11 H 1.48493 * 109.47514 * 209.99877 * 9 7 5 12 12 H 1.48508 * 109.46967 * 330.00311 * 9 7 5 13 13 C 1.34780 * 120.00245 * 93.44779 * 4 3 2 14 14 O 1.21713 * 120.00279 * 175.33862 * 13 4 3 15 15 C 1.46830 * 119.99631 * 355.33105 * 13 4 3 16 16 C 1.43198 * 119.99844 * 255.21712 * 15 13 4 17 17 N 4.37340 * 89.69567 * 280.06218 * 2 1 3 18 18 C 1.38168 * 119.99702 * 75.22221 * 15 13 4 19 19 C 1.41813 * 120.00547 * 6.66701 * 18 15 13 20 20 C 1.46967 * 127.08135 * 17.97980 * 19 18 15 21 21 C 1.34332 * 106.38857 * 179.74150 * 20 19 18 22 22 C 1.50701 * 125.38260 * 180.02562 * 21 20 19 23 23 N 1.36532 * 109.23493 * 0.02562 * 21 20 19 24 24 C 1.46501 * 124.77025 * 179.97438 * 23 21 20 25 25 C 1.52993 * 109.47534 * 90.02115 * 24 23 21 26 26 C 1.53007 * 109.47322 * 179.97438 * 25 24 23 27 27 C 1.34591 * 110.45467 * 359.97438 * 23 21 20 28 28 C 1.50701 * 125.95615 * 180.02562 * 27 23 21 29 29 H 4.40641 * 5.51533 * 179.97438 * 4 1 2 30 30 H 1.08999 * 109.47411 * 97.65809 * 3 2 1 31 31 H 1.09001 * 109.47446 * 337.65820 * 3 2 1 32 32 H 0.96997 * 120.00394 * 179.97438 * 8 7 5 33 33 H 1.08003 * 119.99771 * 186.66831 * 18 15 13 34 34 H 1.08002 * 126.80969 * 359.72160 * 20 19 18 35 35 H 1.08994 * 109.47047 * 89.97604 * 22 21 20 36 36 H 1.08998 * 109.47178 * 209.97832 * 22 21 20 37 37 H 1.09005 * 109.46551 * 329.97476 * 22 21 20 38 38 H 1.09007 * 109.47116 * 210.02383 * 24 23 21 39 39 H 1.09000 * 109.47025 * 330.01256 * 24 23 21 40 40 H 1.09001 * 109.47325 * 299.99825 * 25 24 23 41 41 H 1.09000 * 109.47120 * 60.00305 * 25 24 23 42 42 H 1.08995 * 109.47277 * 180.02562 * 26 25 24 43 43 H 1.09001 * 109.46813 * 300.00181 * 26 25 24 44 44 H 1.08995 * 109.47281 * 59.99658 * 26 25 24 45 45 H 1.09000 * 109.47341 * 269.98308 * 28 27 23 46 46 H 1.09003 * 109.47295 * 29.98692 * 28 27 23 47 47 H 1.08998 * 109.47176 * 149.98382 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.0943 0.8438 5 6 3.2943 2.3470 0.3158 6 1 3.8674 3.0894 0.8513 7 6 2.7195 2.6635 -0.9097 8 7 1.8198 1.8655 -1.4391 9 14 3.2262 4.2232 -1.8040 10 1 4.3744 3.9298 -2.6990 11 1 2.0849 4.7241 -2.6112 12 1 3.6225 5.2556 -0.8128 13 6 3.4247 0.8672 2.1401 14 8 3.9097 1.7531 2.8193 15 6 3.1563 -0.4491 2.7329 16 6 2.0383 -0.6247 3.6102 17 7 1.1508 -0.7641 4.3061 18 6 3.9827 -1.5181 2.4443 19 6 5.1677 -1.3156 1.6921 20 6 5.8600 -0.0410 1.4553 21 6 6.9328 -0.3272 0.6990 22 6 7.9446 0.6745 0.2053 23 7 6.9614 -1.6690 0.4484 24 6 7.9876 -2.3489 -0.3459 25 6 9.1307 -2.7918 0.5694 26 6 10.2022 -3.5024 -0.2601 27 6 5.9142 -2.2792 1.0337 28 6 5.6074 -3.7538 0.9821 29 1 -1.0503 -0.0001 -0.0003 30 1 3.0093 0.1378 -1.0185 31 1 3.0098 -0.9497 0.3906 32 1 1.4184 2.0866 -2.2940 33 1 3.7262 -2.5081 2.7917 34 1 5.5648 0.9328 1.8172 35 1 8.7480 0.7697 0.9357 36 1 8.3563 0.3365 -0.7457 37 1 7.4612 1.6419 0.0686 38 1 7.5519 -3.2220 -0.8317 39 1 8.3724 -1.6660 -1.1034 40 1 9.5665 -1.9187 1.0551 41 1 8.7459 -3.4748 1.3268 42 1 11.0164 -3.8184 0.3921 43 1 9.7662 -4.3756 -0.7454 44 1 10.5871 -2.8200 -1.0178 45 1 4.9733 -3.9631 0.1206 46 1 6.5373 -4.3156 0.8938 47 1 5.0897 -4.0493 1.8946 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490880257.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:57 Heat of formation + Delta-G solvation = 108.832533 kcal Electronic energy + Delta-G solvation = -30090.432132 eV Core-core repulsion = 26241.383694 eV Total energy + Delta-G solvation = -3849.048439 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.36927 -40.60018 -37.67885 -36.96295 -36.28659 -34.81841 -33.71071 -33.29735 -32.92766 -31.36882 -29.92548 -28.20384 -27.49742 -26.56983 -25.75294 -23.77298 -22.68842 -22.02258 -21.02920 -19.67608 -19.22328 -18.53898 -18.10774 -17.55985 -16.91932 -16.42859 -16.15590 -16.02755 -15.78390 -15.50677 -15.05910 -14.79487 -14.61930 -14.46069 -14.21315 -14.05804 -14.00393 -13.94527 -13.81645 -13.54224 -13.40808 -13.29649 -13.16776 -12.99431 -12.81640 -12.76740 -12.63524 -12.55299 -12.39884 -12.18881 -12.12065 -12.03684 -11.62987 -11.23213 -11.05225 -10.85199 -10.53705 -10.24115 -9.79191 -9.07903 -8.39155 -8.17350 -5.84573 -0.23973 1.34858 1.42472 1.44272 1.52717 1.59210 1.96809 2.00984 2.03916 2.18063 2.38002 2.53916 2.61655 3.06954 3.22765 3.51158 3.81756 3.83611 3.91639 4.00707 4.03523 4.13799 4.22608 4.37486 4.41377 4.51285 4.55183 4.63149 4.75653 4.78682 4.81941 4.87997 4.89307 5.04161 5.08922 5.12162 5.13199 5.20852 5.22195 5.25866 5.44797 5.45971 5.50658 5.53054 5.57168 6.04077 6.10686 6.29328 6.51449 6.52374 6.56502 7.19667 7.28042 7.48488 8.05429 8.73123 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009683 B = 0.004778 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2891.032499 B = 5858.764517 C = 7370.065303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 C -0.122 4.122 3 C 0.252 3.748 4 N -0.426 5.426 5 C -0.334 4.334 6 H 0.079 0.921 7 C 0.001 3.999 8 N -0.874 5.874 9 Si 0.985 3.015 10 H -0.262 1.262 11 H -0.281 1.281 12 H -0.279 1.279 13 C 0.516 3.484 14 O -0.630 6.630 15 C -0.180 4.180 16 C 0.291 3.709 17 N -0.478 5.478 18 C 0.099 3.901 19 C -0.232 4.232 20 C -0.175 4.175 21 C -0.001 4.001 22 C -0.079 4.079 23 N -0.424 5.424 24 C 0.090 3.910 25 C -0.133 4.133 26 C -0.146 4.146 27 C 0.113 3.887 28 C -0.095 4.095 29 H 0.221 0.779 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.270 0.730 33 H 0.173 0.827 34 H 0.119 0.881 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.061 0.939 38 H 0.115 0.885 39 H 0.098 0.902 40 H 0.057 0.943 41 H 0.070 0.930 42 H 0.062 0.938 43 H 0.069 0.931 44 H 0.060 0.940 45 H 0.095 0.905 46 H 0.094 0.906 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.851 -17.059 -5.592 24.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 C -0.124 4.124 3 C 0.130 3.870 4 N -0.141 5.141 5 C -0.462 4.462 6 H 0.096 0.904 7 C -0.201 4.201 8 N -0.512 5.512 9 Si 0.809 3.191 10 H -0.187 1.187 11 H -0.206 1.206 12 H -0.204 1.204 13 C 0.305 3.695 14 O -0.519 6.519 15 C -0.188 4.188 16 C -0.021 4.021 17 N -0.156 5.156 18 C 0.075 3.925 19 C -0.239 4.239 20 C -0.197 4.197 21 C -0.108 4.108 22 C -0.136 4.136 23 N -0.097 5.097 24 C -0.030 4.030 25 C -0.172 4.172 26 C -0.203 4.203 27 C -0.007 4.007 28 C -0.152 4.152 29 H 0.238 0.762 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.081 0.919 33 H 0.190 0.810 34 H 0.137 0.863 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.080 0.920 38 H 0.133 0.867 39 H 0.117 0.883 40 H 0.075 0.925 41 H 0.089 0.911 42 H 0.081 0.919 43 H 0.088 0.912 44 H 0.079 0.921 45 H 0.113 0.887 46 H 0.113 0.887 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 15.921 -16.910 -4.658 23.688 hybrid contribution -0.319 1.843 -0.444 1.922 sum 15.602 -15.067 -5.102 22.281 Atomic orbital electron populations 1.24889 0.96261 1.04556 1.04082 1.23437 0.95036 0.96647 0.97267 1.18233 0.83848 0.88931 0.96022 1.43546 1.54645 1.08856 1.07077 1.19583 1.32565 0.90174 1.03901 0.90352 1.25951 0.94641 1.01803 0.97716 1.70098 1.24054 1.38343 1.18695 0.85059 0.78069 0.77953 0.78020 1.18706 1.20632 1.20399 1.17530 0.83201 0.87107 0.81615 1.90597 1.51052 1.48121 1.62101 1.17752 0.97158 0.96858 1.07065 1.25527 0.92130 0.92350 0.92047 1.81083 1.11795 1.09473 1.13285 1.21349 0.87494 0.96669 0.86946 1.18487 0.99932 0.93467 1.11981 1.22422 0.96849 0.97800 1.02669 1.20291 1.00871 0.84580 1.05049 1.20315 0.96028 0.95788 1.01464 1.43792 1.20572 1.05825 1.39559 1.22333 0.87838 0.98967 0.93877 1.21844 0.95618 1.01018 0.98671 1.21677 0.97892 1.00755 1.00023 1.21388 0.87748 0.95997 0.95613 1.20723 1.04209 0.84844 1.05438 0.76242 0.89259 0.89370 0.91936 0.81017 0.86287 0.90230 0.89757 0.91964 0.86734 0.88326 0.92452 0.91137 0.91908 0.91194 0.92062 0.88665 0.88725 0.88169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -12.61 19.16 74.32 1.42 -11.18 16 2 C -0.12 -5.85 10.95 31.12 0.34 -5.51 16 3 C 0.25 11.63 4.93 84.57 0.42 12.05 16 4 N -0.43 -22.16 2.24 -649.80 -1.46 -23.62 16 5 C -0.33 -18.82 9.43 84.09 0.79 -18.02 16 6 H 0.08 4.74 7.27 -2.91 -0.02 4.71 16 7 C 0.00 0.06 5.14 84.94 0.44 0.50 16 8 N -0.87 -45.62 8.39 21.67 0.18 -45.44 16 9 Si 0.98 42.35 29.57 68.60 2.03 44.38 16 10 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 11 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 12 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 13 C 0.52 26.74 3.91 86.49 0.34 27.08 16 14 O -0.63 -37.57 15.42 -4.39 -0.07 -37.64 16 15 C -0.18 -7.63 4.52 -19.80 -0.09 -7.72 16 16 C 0.29 12.82 15.36 88.33 1.36 14.18 16 17 N -0.48 -21.65 18.54 19.01 0.35 -21.29 16 18 C 0.10 3.12 8.16 23.14 0.19 3.31 16 19 C -0.23 -7.19 5.03 -20.03 -0.10 -7.30 16 20 C -0.17 -6.56 9.13 23.67 0.22 -6.35 16 21 C 0.00 -0.03 6.84 40.93 0.28 0.25 16 22 C -0.08 -1.87 10.04 71.24 0.72 -1.16 16 23 N -0.42 -8.97 2.68 -494.01 -1.33 -10.29 16 24 C 0.09 1.07 5.36 86.38 0.46 1.53 16 25 C -0.13 -1.33 6.26 30.59 0.19 -1.14 16 26 C -0.15 -0.91 9.91 71.98 0.71 -0.20 16 27 C 0.11 2.44 6.95 42.21 0.29 2.73 16 28 C -0.10 -1.06 9.63 71.24 0.69 -0.37 16 29 H 0.22 8.24 7.80 -4.40 -0.03 8.20 16 30 H 0.09 4.33 6.62 -2.39 -0.02 4.32 16 31 H 0.09 3.51 5.01 -2.39 -0.01 3.50 16 32 H 0.27 13.44 8.31 -92.71 -0.77 12.67 16 33 H 0.17 3.66 7.53 -2.91 -0.02 3.64 16 34 H 0.12 5.73 5.08 -2.91 -0.01 5.71 16 35 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.08 1.51 6.92 -2.39 -0.02 1.50 16 37 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 38 H 0.11 0.85 7.49 -2.38 -0.02 0.83 16 39 H 0.10 1.08 6.88 -2.39 -0.02 1.06 16 40 H 0.06 0.75 8.14 -2.39 -0.02 0.74 16 41 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 43 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 44 H 0.06 0.36 8.14 -2.39 -0.02 0.35 16 45 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.09 0.59 7.59 -2.39 -0.02 0.57 16 47 H 0.10 0.90 7.52 -2.39 -0.02 0.88 16 Total: -1.00 -78.88 398.00 9.36 -69.52 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: 0.99 Total: 21.70 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: 8.66 Total: 2.68 kcal Atomic # 7 Polarization: -98.39 SS G_CDS: -2.25 Total: -100.64 kcal Atomic # 8 Polarization: -37.57 SS G_CDS: -0.07 Total: -37.64 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -78.88 9.36 -69.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490880257.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.352 kcal (2) G-P(sol) polarization free energy of solvation -78.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds