Wall clock time and date at job start Sat Apr 11 2020 05:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50704 * 119.99759 * 2 1 4 4 H 1.09008 * 109.45361 * 4.97489 * 3 2 1 5 5 C 1.53035 * 109.46497 * 124.94257 * 3 2 1 6 6 C 1.53118 * 109.28132 * 179.19486 * 5 3 2 7 7 C 1.53119 * 109.16497 * 302.35167 * 6 5 3 8 8 C 1.53042 * 109.27716 * 57.64886 * 7 6 5 9 9 N 1.46842 * 109.46482 * 245.00437 * 3 2 1 10 10 C 1.46899 * 111.00394 * 54.13956 * 9 3 2 11 11 C 1.50706 * 109.46692 * 65.58599 * 10 9 3 12 12 N 1.29823 * 118.34753 * 354.44848 * 11 10 9 13 13 C 1.35645 * 121.62031 * 179.72502 * 12 11 10 14 14 C 1.39627 * 121.61959 * 180.30106 * 13 12 11 15 15 C 1.37714 * 119.69203 * 180.28191 * 14 13 12 16 16 C 1.38871 * 120.82465 * 359.97438 * 15 14 13 17 17 C 1.37793 * 120.57385 * 359.97438 * 16 15 14 18 18 C 1.39364 * 119.51737 * 0.03642 * 17 16 15 19 19 C 1.46958 * 121.90772 * 179.97438 * 18 17 16 20 20 O 1.21715 * 121.29182 * 0.02562 * 19 18 17 21 21 N 1.35345 * 117.42301 * 179.97438 * 19 18 17 22 22 C 1.37107 * 119.71542 * 179.97438 * 21 19 18 23 23 H 1.08003 * 120.00569 * 134.97652 * 22 21 19 24 24 C 1.39076 * 119.99729 * 314.97174 * 22 21 19 25 25 N 1.31262 * 119.99979 * 162.37951 * 24 22 21 26 26 Si 1.86798 * 120.00101 * 342.37470 * 24 22 21 27 27 H 1.48507 * 109.46700 * 94.25437 * 26 24 22 28 28 H 1.48504 * 109.47131 * 214.25000 * 26 24 22 29 29 H 1.48500 * 109.47260 * 334.25408 * 26 24 22 30 30 H 1.07999 * 119.99664 * 179.97438 * 1 2 3 31 31 H 1.07999 * 120.00356 * 359.97438 * 1 2 3 32 32 H 1.08000 * 120.00819 * 180.02562 * 2 1 3 33 33 H 1.08997 * 109.50752 * 299.14338 * 5 3 2 34 34 H 1.09005 * 109.49973 * 59.21727 * 5 3 2 35 35 H 1.09002 * 109.51931 * 62.25565 * 6 5 3 36 36 H 1.08997 * 109.52227 * 182.37888 * 6 5 3 37 37 H 1.08988 * 109.50525 * 177.59479 * 7 6 5 38 38 H 1.09008 * 109.49906 * 297.71342 * 7 6 5 39 39 H 1.08994 * 109.45839 * 180.80859 * 8 7 6 40 40 H 1.08998 * 109.45939 * 60.84219 * 8 7 6 41 41 H 1.08997 * 109.46787 * 305.58768 * 10 9 3 42 42 H 1.08999 * 109.47468 * 185.58074 * 10 9 3 43 43 H 1.08007 * 120.15483 * 0.25902 * 14 13 12 44 44 H 1.07999 * 119.58530 * 179.97438 * 15 14 13 45 45 H 1.08006 * 119.71170 * 179.97438 * 16 15 14 46 46 H 1.08001 * 120.24005 * 180.02562 * 17 16 15 47 47 H 0.97002 * 120.00159 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 1.3581 2.1315 0.0891 5 6 3.0341 1.3336 1.1828 6 6 3.8116 2.6527 1.1672 7 6 4.5463 2.7873 -0.1695 8 6 3.5317 2.7167 -1.3131 9 7 2.8147 1.4365 -1.2548 10 6 1.9310 1.2746 -2.4170 11 6 0.9428 2.4117 -2.4588 12 7 0.9303 3.2541 -1.4710 13 6 0.0726 4.3046 -1.4431 14 6 0.0634 5.2141 -0.3837 15 6 -0.8285 6.2634 -0.3932 16 6 -1.7204 6.4297 -1.4446 17 6 -1.7300 5.5461 -2.5019 18 6 -0.8357 4.4773 -2.5118 19 6 -0.8010 3.5037 -3.6120 20 8 -1.5566 3.5958 -4.5618 21 7 0.1046 2.5012 -3.5289 22 6 0.1773 1.5664 -4.5293 23 1 1.1387 1.2660 -4.9189 24 6 -0.9871 1.0049 -5.0422 25 7 -0.9637 0.3900 -6.2017 26 14 -2.5844 1.1257 -4.0812 27 1 -3.3531 2.3084 -4.5455 28 1 -3.3878 -0.1039 -4.2998 29 1 -2.2819 1.2688 -2.6344 30 1 -0.5399 -0.9353 -0.0004 31 1 -0.5401 0.9353 0.0004 32 1 1.8501 -0.9352 -0.0004 33 1 2.4748 1.2519 2.1147 34 1 3.7306 0.4990 1.1020 35 1 3.1186 3.4854 1.2874 36 1 4.5340 2.6593 1.9833 37 1 5.0672 3.7440 -0.2037 38 1 5.2670 1.9759 -0.2719 39 1 4.0532 2.7979 -2.2667 40 1 2.8196 3.5364 -1.2178 41 1 1.3942 0.3294 -2.3364 42 1 2.5268 1.2774 -3.3298 43 1 0.7524 5.0951 0.4395 44 1 -0.8344 6.9656 0.4273 45 1 -2.4125 7.2588 -1.4334 46 1 -2.4257 5.6808 -3.3170 47 1 -1.7759 -0.0013 -6.5597 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785997743.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:46 Heat of formation + Delta-G solvation = 45.214252 kcal Electronic energy + Delta-G solvation = -31434.262609 eV Core-core repulsion = 27582.455474 eV Total energy + Delta-G solvation = -3851.807134 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.74484 -40.40582 -39.48000 -38.21786 -35.74259 -34.96359 -34.35673 -34.15945 -32.17559 -30.74792 -30.43887 -28.30021 -27.76826 -25.05149 -24.45260 -24.01216 -23.15722 -22.59255 -20.75729 -20.59751 -20.47431 -19.70581 -18.84437 -17.90356 -17.06511 -16.80916 -16.60350 -16.23752 -16.05502 -15.85995 -15.39668 -15.33318 -15.09174 -14.98550 -14.91088 -14.69701 -14.54870 -14.15320 -13.97460 -13.80593 -13.51075 -13.15660 -13.00996 -12.90706 -12.67155 -12.58126 -12.36938 -12.32930 -12.29972 -11.63381 -11.52017 -11.31111 -11.26243 -11.10672 -11.08864 -10.83295 -10.67021 -10.21955 -10.05392 -9.03977 -8.92901 -8.77316 -6.66899 -0.29737 -0.14604 1.01728 1.10543 1.22067 1.25095 1.36698 1.87032 2.01344 2.11269 2.66866 2.92367 3.10794 3.28084 3.55247 3.77622 3.92947 3.99571 4.10722 4.12304 4.24341 4.32099 4.35106 4.39211 4.43574 4.48781 4.63416 4.67842 4.82091 4.90690 4.96967 4.97550 5.02136 5.04125 5.15395 5.20526 5.24408 5.27083 5.28137 5.40433 5.43982 5.45411 5.48988 5.56637 5.70487 5.74468 5.83084 5.85688 6.06210 6.20833 6.30195 6.33602 6.65402 7.07683 7.19459 8.24512 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010160 B = 0.006329 C = 0.004688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2755.377634 B = 4422.895745 C = 5970.722395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.134 4.134 3 C 0.090 3.910 4 H 0.074 0.926 5 C -0.098 4.098 6 C -0.113 4.113 7 C -0.105 4.105 8 C 0.034 3.966 9 N -0.497 5.497 10 C 0.121 3.879 11 C 0.342 3.658 12 N -0.529 5.529 13 C 0.141 3.859 14 C -0.121 4.121 15 C -0.064 4.064 16 C -0.142 4.142 17 C -0.069 4.069 18 C -0.239 4.239 19 C 0.474 3.526 20 O -0.558 6.558 21 N -0.384 5.384 22 C -0.381 4.381 23 H 0.111 0.889 24 C 0.078 3.922 25 N -0.859 5.859 26 Si 0.933 3.067 27 H -0.277 1.277 28 H -0.272 1.272 29 H -0.279 1.279 30 H 0.106 0.894 31 H 0.067 0.933 32 H 0.124 0.876 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.054 0.946 40 H 0.065 0.935 41 H 0.103 0.897 42 H 0.099 0.901 43 H 0.155 0.845 44 H 0.175 0.825 45 H 0.161 0.839 46 H 0.114 0.886 47 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.041 5.825 17.939 20.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.152 4.152 3 C -0.018 4.018 4 H 0.092 0.908 5 C -0.136 4.136 6 C -0.150 4.150 7 C -0.142 4.142 8 C -0.094 4.094 9 N -0.219 5.219 10 C -0.010 4.010 11 C 0.077 3.923 12 N -0.256 5.256 13 C 0.028 3.972 14 C -0.140 4.140 15 C -0.083 4.083 16 C -0.160 4.160 17 C -0.088 4.088 18 C -0.246 4.246 19 C 0.272 3.728 20 O -0.440 6.440 21 N -0.091 5.091 22 C -0.508 4.508 23 H 0.129 0.871 24 C -0.134 4.134 25 N -0.491 5.491 26 Si 0.761 3.239 27 H -0.204 1.204 28 H -0.198 1.198 29 H -0.204 1.204 30 H 0.124 0.876 31 H 0.085 0.915 32 H 0.142 0.858 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.121 0.879 42 H 0.117 0.883 43 H 0.173 0.827 44 H 0.193 0.807 45 H 0.179 0.821 46 H 0.132 0.868 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.326 5.390 17.817 20.004 hybrid contribution -2.411 0.395 -1.587 2.913 sum 4.916 5.785 16.229 17.917 Atomic orbital electron populations 1.23821 0.96671 1.00996 1.02309 1.23055 0.95069 0.99158 0.97952 1.21201 0.95351 0.95289 0.89911 0.90811 1.21511 0.97524 0.98637 0.95951 1.21510 0.99087 0.97084 0.97323 1.21497 0.97043 1.02015 0.93680 1.22460 0.96684 0.91241 0.99006 1.62475 1.25204 1.33653 1.00613 1.21324 0.90562 0.93024 0.96080 1.25046 0.90976 0.95449 0.80783 1.68638 1.26975 1.06969 1.22972 1.19309 0.90639 0.93732 0.93558 1.21047 1.01530 0.94150 0.97281 1.21666 0.92156 0.96323 0.98162 1.21426 1.01276 0.99903 0.93438 1.21094 0.95822 0.92790 0.99123 1.20853 1.05097 1.01093 0.97510 1.19370 0.83417 0.82148 0.87841 1.90646 1.42389 1.74875 1.36069 1.42567 1.27993 1.20947 1.17574 1.19151 0.96501 1.20128 1.14986 0.87138 1.25634 1.00607 0.92526 0.94609 1.69652 1.31363 1.32928 1.15191 0.85977 0.81760 0.77297 0.78906 1.20405 1.19800 1.20393 0.87607 0.91473 0.85781 0.91150 0.91205 0.92457 0.90364 0.90832 0.91492 0.92702 0.91749 0.87940 0.88349 0.82697 0.80723 0.82148 0.86766 0.90207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -6.07 14.17 67.78 0.96 -5.11 16 2 C -0.13 -3.70 7.25 25.65 0.19 -3.51 16 3 C 0.09 2.47 1.82 44.19 0.08 2.55 16 4 H 0.07 2.33 5.13 -2.38 -0.01 2.32 16 5 C -0.10 -2.07 5.36 30.65 0.16 -1.90 16 6 C -0.11 -2.11 6.00 30.67 0.18 -1.92 16 7 C -0.10 -2.15 6.09 30.65 0.19 -1.97 16 8 C 0.03 0.93 4.98 86.33 0.43 1.36 16 9 N -0.50 -14.64 4.69 -880.04 -4.12 -18.76 16 10 C 0.12 4.35 4.34 85.56 0.37 4.72 16 11 C 0.34 14.23 6.92 137.94 0.95 15.19 16 12 N -0.53 -19.66 4.15 -179.53 -0.74 -20.41 16 13 C 0.14 5.26 6.63 39.65 0.26 5.52 16 14 C -0.12 -3.29 10.03 22.48 0.23 -3.06 16 15 C -0.06 -1.40 10.00 22.30 0.22 -1.18 16 16 C -0.14 -3.66 10.02 22.32 0.22 -3.44 16 17 C -0.07 -2.53 9.68 22.44 0.22 -2.32 16 18 C -0.24 -10.43 5.89 -19.96 -0.12 -10.55 16 19 C 0.47 24.91 5.82 86.44 0.50 25.41 16 20 O -0.56 -32.96 12.54 -4.40 -0.06 -33.02 16 21 N -0.38 -19.31 2.28 -460.24 -1.05 -20.36 16 22 C -0.38 -20.79 8.62 84.07 0.72 -20.06 16 23 H 0.11 6.06 7.22 -2.91 -0.02 6.04 16 24 C 0.08 4.45 4.91 84.98 0.42 4.87 16 25 N -0.86 -49.66 13.95 21.68 0.30 -49.36 16 26 Si 0.93 49.11 24.86 68.60 1.71 50.82 16 27 H -0.28 -15.78 6.36 99.48 0.63 -15.14 16 28 H -0.27 -13.19 7.11 99.48 0.71 -12.48 16 29 H -0.28 -14.65 7.11 99.48 0.71 -13.95 16 30 H 0.11 2.90 8.06 -2.91 -0.02 2.88 16 31 H 0.07 2.35 7.84 -2.91 -0.02 2.33 16 32 H 0.12 3.03 8.06 -2.91 -0.02 3.00 16 33 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 35 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 39 H 0.05 1.56 8.12 -2.39 -0.02 1.54 16 40 H 0.06 1.99 5.32 -2.39 -0.01 1.98 16 41 H 0.10 3.86 6.60 -2.39 -0.02 3.84 16 42 H 0.10 3.60 7.36 -2.39 -0.02 3.58 16 43 H 0.16 3.38 8.06 -2.91 -0.02 3.36 16 44 H 0.18 2.14 8.06 -2.91 -0.02 2.12 16 45 H 0.16 2.90 8.06 -2.91 -0.02 2.87 16 46 H 0.11 4.41 7.83 -2.91 -0.02 4.38 16 47 H 0.29 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -68.61 364.43 3.13 -65.48 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: 0.90 Total: 21.01 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: 6.20 Total: 4.59 kcal Atomic # 7 Polarization: -103.27 SS G_CDS: -5.61 Total: -108.89 kcal Atomic # 8 Polarization: -32.96 SS G_CDS: -0.06 Total: -33.02 kcal Atomic # 14 Polarization: 49.11 SS G_CDS: 1.71 Total: 50.82 kcal Total: -68.61 3.13 -65.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785997743.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.696 kcal (2) G-P(sol) polarization free energy of solvation -68.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds