Wall clock time and date at job start Sat Apr 11 2020 05:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50704 * 119.99490 * 2 1 4 4 H 1.09001 * 109.45381 * 0.02562 * 3 2 1 5 5 C 1.53042 * 109.45849 * 240.05034 * 3 2 1 6 6 C 1.53113 * 109.27490 * 180.80906 * 5 3 2 7 7 C 1.53114 * 109.16463 * 57.65167 * 6 5 3 8 8 C 1.53033 * 109.28240 * 302.34587 * 7 6 5 9 9 N 1.46844 * 109.45989 * 119.99679 * 3 2 1 10 10 C 1.46897 * 111.00207 * 305.85109 * 9 3 2 11 11 C 1.50704 * 109.47056 * 169.88497 * 10 9 3 12 12 N 1.29828 * 118.34833 * 354.93974 * 11 10 9 13 13 C 1.35639 * 121.62114 * 179.97438 * 12 11 10 14 14 C 1.39640 * 121.61399 * 179.97438 * 13 12 11 15 15 C 1.37708 * 119.69061 * 180.02562 * 14 13 12 16 16 C 1.38869 * 120.82611 * 0.25987 * 15 14 13 17 17 C 1.37798 * 120.57221 * 359.47798 * 16 15 14 18 18 C 1.39366 * 119.51684 * 0.51171 * 17 16 15 19 19 C 1.46962 * 121.91027 * 179.71999 * 18 17 16 20 20 O 1.21718 * 121.29034 * 0.02562 * 19 18 17 21 21 N 1.35342 * 117.42416 * 180.02562 * 19 18 17 22 22 C 1.37102 * 119.71848 * 179.97438 * 21 19 18 23 23 H 1.08004 * 120.00638 * 221.62252 * 22 21 19 24 24 C 1.39083 * 119.99655 * 41.62236 * 22 21 19 25 25 N 1.31251 * 119.99865 * 19.33817 * 24 22 21 26 26 Si 1.86800 * 119.99817 * 199.34304 * 24 22 21 27 27 H 1.48495 * 109.47531 * 89.99847 * 26 24 22 28 28 H 1.48506 * 109.46731 * 209.99797 * 26 24 22 29 29 H 1.48498 * 109.47109 * 329.99347 * 26 24 22 30 30 H 1.08001 * 119.99803 * 179.97438 * 1 2 3 31 31 H 1.07995 * 120.00706 * 0.02562 * 1 2 3 32 32 H 1.07995 * 120.00226 * 179.97438 * 2 1 3 33 33 H 1.08997 * 109.50027 * 60.86426 * 5 3 2 34 34 H 1.09005 * 109.53338 * 300.76492 * 5 3 2 35 35 H 1.09007 * 109.52225 * 297.75008 * 6 5 3 36 36 H 1.09001 * 109.52464 * 177.56409 * 6 5 3 37 37 H 1.09001 * 109.50407 * 182.40241 * 7 6 5 38 38 H 1.08999 * 109.50172 * 62.28941 * 7 6 5 39 39 H 1.09008 * 109.46202 * 299.16502 * 8 7 6 40 40 H 1.08994 * 109.46215 * 179.19034 * 8 7 6 41 41 H 1.09004 * 109.46920 * 49.88807 * 10 9 3 42 42 H 1.08991 * 109.46953 * 289.88547 * 10 9 3 43 43 H 1.08001 * 120.15135 * 0.02562 * 14 13 12 44 44 H 1.08006 * 119.58722 * 179.97438 * 15 14 13 45 45 H 1.07999 * 119.71695 * 179.74273 * 16 15 14 46 46 H 1.08002 * 120.24105 * 180.23168 * 17 16 15 47 47 H 0.97006 * 120.00073 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 1.3548 2.1334 0.0005 5 6 2.9422 1.3866 -1.2503 6 6 3.7208 2.7049 -1.2359 7 6 4.5544 2.7824 0.0461 8 6 3.6290 2.6605 1.2588 9 7 2.9075 1.3828 1.1991 10 6 2.1136 1.1692 2.4165 11 6 3.0371 1.0081 3.5965 12 7 4.3164 0.9754 3.3782 13 6 5.2073 0.8334 4.3911 14 6 6.5833 0.7976 4.1560 15 6 7.4525 0.6515 5.2141 16 6 6.9779 0.5336 6.5138 17 6 5.6248 0.5714 6.7720 18 6 4.7280 0.7186 5.7154 19 6 3.2747 0.7593 5.9300 20 8 2.7976 0.6657 7.0458 21 7 2.4874 0.9049 4.8388 22 6 1.1249 0.9481 4.9847 23 1 0.4900 0.4217 4.2873 24 6 0.5601 1.6700 6.0308 25 7 1.2594 2.5989 6.6398 26 14 -1.1934 1.3172 6.5693 27 1 -1.1867 0.2714 7.6235 28 1 -1.8052 2.5588 7.1076 29 1 -1.9825 0.8412 5.4049 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5401 0.9352 -0.0004 32 1 1.8500 -0.9352 0.0004 33 1 2.3139 1.3446 -2.1400 34 1 3.6419 0.5508 -1.2591 35 1 3.0221 3.5410 -1.2671 36 1 4.3805 2.7479 -2.1026 37 1 5.0781 3.7376 0.0825 38 1 5.2795 1.9686 0.0584 39 1 2.9130 3.4824 1.2533 40 1 4.2211 2.7009 2.1729 41 1 1.5091 0.2693 2.3027 42 1 1.4613 2.0269 2.5800 43 1 6.9641 0.8842 3.1491 44 1 8.5164 0.6236 5.0303 45 1 7.6754 0.4156 7.3299 46 1 5.2617 0.4829 7.7853 47 1 0.8654 3.1027 7.3692 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785997744.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:51 Heat of formation + Delta-G solvation = 49.085956 kcal Electronic energy + Delta-G solvation = -30464.429291 eV Core-core repulsion = 26612.790047 eV Total energy + Delta-G solvation = -3851.639245 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.51103 -39.04053 -37.55243 -36.24946 -34.01443 -33.75028 -33.08640 -31.86254 -30.33826 -29.47604 -29.14377 -26.75456 -25.76443 -23.50571 -23.08130 -22.82827 -21.38488 -20.77081 -19.61094 -19.46751 -18.73194 -17.78272 -16.89805 -15.83900 -15.63037 -15.04594 -14.87125 -14.71028 -14.45278 -14.26736 -13.96426 -13.81150 -13.69612 -13.57748 -13.41430 -13.02629 -12.62332 -12.45700 -12.32683 -12.16286 -11.87974 -11.78757 -11.39037 -11.31843 -11.19193 -11.04047 -10.97416 -10.89250 -10.76318 -10.55587 -10.54069 -10.23592 -10.03914 -9.53183 -9.23851 -8.89086 -8.69563 -8.34714 -8.33182 -7.84050 -7.00954 -6.67461 -4.51892 1.53709 1.70064 2.35924 3.04568 3.11971 3.14537 3.27560 3.73976 3.93644 4.07658 4.50516 4.70705 4.85408 4.91939 5.05356 5.11082 5.17203 5.26264 5.37341 5.40569 5.47582 5.53280 5.59661 5.66152 5.81032 5.81363 5.85988 5.91657 5.96004 6.00417 6.06139 6.12541 6.15747 6.21883 6.25122 6.30196 6.45376 6.58845 6.62419 6.71028 6.74733 6.81537 6.84430 7.05415 7.09956 7.17682 7.42826 7.54865 7.55852 7.64321 8.14729 8.48790 8.74065 9.23052 9.53704 10.33575 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008240 B = 0.005787 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3397.138347 B = 4837.189993 C = 7544.434656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.137 4.137 3 C 0.111 3.889 4 H 0.040 0.960 5 C -0.103 4.103 6 C -0.121 4.121 7 C -0.111 4.111 8 C 0.058 3.942 9 N -0.506 5.506 10 C 0.123 3.877 11 C 0.364 3.636 12 N -0.542 5.542 13 C 0.167 3.833 14 C -0.130 4.130 15 C -0.091 4.091 16 C -0.177 4.177 17 C -0.039 4.039 18 C -0.211 4.211 19 C 0.520 3.480 20 O -0.504 6.504 21 N -0.352 5.352 22 C -0.384 4.384 23 H 0.107 0.893 24 C 0.080 3.920 25 N -0.801 5.801 26 Si 0.927 3.073 27 H -0.269 1.269 28 H -0.280 1.280 29 H -0.264 1.264 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.114 0.886 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.073 0.927 39 H 0.019 0.981 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.065 0.935 43 H 0.124 0.876 44 H 0.116 0.884 45 H 0.115 0.885 46 H 0.122 0.878 47 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.478 -0.666 -12.222 12.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.156 4.156 3 C 0.003 3.997 4 H 0.058 0.942 5 C -0.141 4.141 6 C -0.159 4.159 7 C -0.149 4.149 8 C -0.070 4.070 9 N -0.231 5.231 10 C -0.006 4.006 11 C 0.101 3.899 12 N -0.270 5.270 13 C 0.051 3.949 14 C -0.150 4.150 15 C -0.111 4.111 16 C -0.197 4.197 17 C -0.058 4.058 18 C -0.219 4.219 19 C 0.314 3.686 20 O -0.378 6.378 21 N -0.056 5.056 22 C -0.510 4.510 23 H 0.124 0.876 24 C -0.137 4.137 25 N -0.428 5.428 26 Si 0.751 3.249 27 H -0.195 1.195 28 H -0.205 1.205 29 H -0.189 1.189 30 H 0.116 0.884 31 H 0.112 0.888 32 H 0.132 0.868 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.037 0.963 40 H 0.117 0.883 41 H 0.115 0.885 42 H 0.083 0.917 43 H 0.142 0.858 44 H 0.134 0.866 45 H 0.133 0.867 46 H 0.140 0.860 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.876 -0.860 -12.026 12.664 hybrid contribution -1.658 0.486 1.396 2.221 sum 2.218 -0.375 -10.630 10.865 Atomic orbital electron populations 1.23855 0.95907 1.01795 1.01608 1.22902 0.95434 0.98518 0.98703 1.20787 0.93239 0.94386 0.91330 0.94222 1.21529 0.98408 0.98400 0.95796 1.21600 0.98783 0.97332 0.98143 1.21525 0.98164 1.01583 0.93620 1.22190 0.96353 0.88076 1.00370 1.61620 1.27168 1.34355 0.99955 1.20740 0.92057 1.02520 0.85272 1.22721 0.90196 0.90517 0.86511 1.68513 0.99151 1.28434 1.30862 1.18875 0.93770 0.94302 0.87982 1.20586 0.90740 1.04760 0.98913 1.20963 0.98821 0.98634 0.92635 1.20819 0.94875 1.07352 0.96611 1.20875 0.92391 0.94325 0.98220 1.20864 0.94067 1.11812 0.95108 1.18210 0.85620 0.79724 0.85024 1.90661 1.75984 1.48498 1.22609 1.42262 1.08598 1.49856 1.04845 1.19578 0.79273 1.34610 1.17562 0.87584 1.25399 1.00438 0.92538 0.95360 1.69805 1.38510 1.15446 1.19079 0.85956 0.80692 0.78546 0.79676 1.19459 1.20502 1.18874 0.88402 0.88778 0.86833 0.92044 0.90884 0.92686 0.92219 0.92246 0.90822 0.96300 0.88278 0.88453 0.91713 0.85763 0.86605 0.86729 0.86018 0.91000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.22 14.27 29.01 0.41 -1.81 16 2 C -0.14 -1.71 7.15 -36.02 -0.26 -1.97 16 3 C 0.11 1.46 2.21 -68.87 -0.15 1.31 16 4 H 0.04 0.54 7.78 -51.93 -0.40 0.13 16 5 C -0.10 -1.17 5.36 -26.65 -0.14 -1.31 16 6 C -0.12 -1.32 6.00 -26.61 -0.16 -1.48 16 7 C -0.11 -1.42 6.09 -26.66 -0.16 -1.58 16 8 C 0.06 0.91 5.05 -3.83 -0.02 0.89 16 9 N -0.51 -8.06 4.10 -229.51 -0.94 -9.00 16 10 C 0.12 2.28 3.86 -4.98 -0.02 2.26 16 11 C 0.36 8.07 7.06 -154.87 -1.09 6.97 16 12 N -0.54 -11.60 7.38 -8.10 -0.06 -11.66 16 13 C 0.17 3.62 6.63 -84.49 -0.56 3.06 16 14 C -0.13 -2.35 10.03 -39.25 -0.39 -2.74 16 15 C -0.09 -1.46 10.00 -39.54 -0.40 -1.85 16 16 C -0.18 -3.03 10.02 -39.51 -0.40 -3.43 16 17 C -0.04 -0.80 9.68 -39.32 -0.38 -1.19 16 18 C -0.21 -4.99 5.89 -104.78 -0.62 -5.61 16 19 C 0.52 14.03 6.93 -12.47 -0.09 13.95 16 20 O -0.50 -14.91 14.31 5.17 0.07 -14.83 16 21 N -0.35 -8.95 2.68 -59.56 -0.16 -9.11 16 22 C -0.38 -9.72 8.12 -14.88 -0.12 -9.84 16 23 H 0.11 2.46 7.23 -52.48 -0.38 2.08 16 24 C 0.08 2.06 4.37 -17.49 -0.08 1.98 16 25 N -0.80 -22.23 11.57 55.50 0.64 -21.59 16 26 Si 0.93 19.82 29.59 -169.99 -5.03 14.79 16 27 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 28 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 29 H -0.26 -5.28 7.11 56.52 0.40 -4.87 16 30 H 0.10 1.00 8.06 -52.49 -0.42 0.58 16 31 H 0.09 1.05 7.83 -52.49 -0.41 0.64 16 32 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.02 0.30 8.14 -51.92 -0.42 -0.12 16 40 H 0.10 1.83 5.78 -51.93 -0.30 1.53 16 41 H 0.10 1.74 6.20 -51.93 -0.32 1.42 16 42 H 0.07 1.25 7.86 -51.93 -0.41 0.84 16 43 H 0.12 1.99 8.06 -52.49 -0.42 1.57 16 44 H 0.12 1.44 8.06 -52.48 -0.42 1.02 16 45 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 46 H 0.12 2.52 7.83 -52.49 -0.41 2.11 16 47 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 375.77 15.07 5.66 5.66 Total: -1.00 -30.02 375.77 -11.28 -41.29 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -6.84 Total: 6.85 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -4.62 Total: -2.39 kcal Atomic # 7 Polarization: -50.84 SS G_CDS: -0.52 Total: -51.36 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: 0.07 Total: -14.83 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.03 Total: 14.79 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.02 -11.28 -41.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785997744.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.380 kcal (2) G-P(sol) polarization free energy of solvation -30.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds