Wall clock time and date at job start Sat Apr 11 2020 05:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50704 * 119.99490 * 2 1 4 4 H 1.09001 * 109.45381 * 0.02562 * 3 2 1 5 5 C 1.53042 * 109.45849 * 240.05034 * 3 2 1 6 6 C 1.53113 * 109.27490 * 180.80906 * 5 3 2 7 7 C 1.53114 * 109.16463 * 57.65167 * 6 5 3 8 8 C 1.53033 * 109.28240 * 302.34587 * 7 6 5 9 9 N 1.46844 * 109.45989 * 119.99679 * 3 2 1 10 10 C 1.46897 * 111.00207 * 305.85109 * 9 3 2 11 11 C 1.50704 * 109.47056 * 169.88497 * 10 9 3 12 12 N 1.29828 * 118.34833 * 354.93974 * 11 10 9 13 13 C 1.35639 * 121.62114 * 179.97438 * 12 11 10 14 14 C 1.39640 * 121.61399 * 179.97438 * 13 12 11 15 15 C 1.37708 * 119.69061 * 180.02562 * 14 13 12 16 16 C 1.38869 * 120.82611 * 0.25987 * 15 14 13 17 17 C 1.37798 * 120.57221 * 359.47798 * 16 15 14 18 18 C 1.39366 * 119.51684 * 0.51171 * 17 16 15 19 19 C 1.46962 * 121.91027 * 179.71999 * 18 17 16 20 20 O 1.21718 * 121.29034 * 0.02562 * 19 18 17 21 21 N 1.35342 * 117.42416 * 180.02562 * 19 18 17 22 22 C 1.37102 * 119.71848 * 179.97438 * 21 19 18 23 23 H 1.08004 * 120.00638 * 221.62252 * 22 21 19 24 24 C 1.39083 * 119.99655 * 41.62236 * 22 21 19 25 25 N 1.31251 * 119.99865 * 19.33817 * 24 22 21 26 26 Si 1.86800 * 119.99817 * 199.34304 * 24 22 21 27 27 H 1.48495 * 109.47531 * 89.99847 * 26 24 22 28 28 H 1.48506 * 109.46731 * 209.99797 * 26 24 22 29 29 H 1.48498 * 109.47109 * 329.99347 * 26 24 22 30 30 H 1.08001 * 119.99803 * 179.97438 * 1 2 3 31 31 H 1.07995 * 120.00706 * 0.02562 * 1 2 3 32 32 H 1.07995 * 120.00226 * 179.97438 * 2 1 3 33 33 H 1.08997 * 109.50027 * 60.86426 * 5 3 2 34 34 H 1.09005 * 109.53338 * 300.76492 * 5 3 2 35 35 H 1.09007 * 109.52225 * 297.75008 * 6 5 3 36 36 H 1.09001 * 109.52464 * 177.56409 * 6 5 3 37 37 H 1.09001 * 109.50407 * 182.40241 * 7 6 5 38 38 H 1.08999 * 109.50172 * 62.28941 * 7 6 5 39 39 H 1.09008 * 109.46202 * 299.16502 * 8 7 6 40 40 H 1.08994 * 109.46215 * 179.19034 * 8 7 6 41 41 H 1.09004 * 109.46920 * 49.88807 * 10 9 3 42 42 H 1.08991 * 109.46953 * 289.88547 * 10 9 3 43 43 H 1.08001 * 120.15135 * 0.02562 * 14 13 12 44 44 H 1.08006 * 119.58722 * 179.97438 * 15 14 13 45 45 H 1.07999 * 119.71695 * 179.74273 * 16 15 14 46 46 H 1.08002 * 120.24105 * 180.23168 * 17 16 15 47 47 H 0.97006 * 120.00073 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 1.3548 2.1334 0.0005 5 6 2.9422 1.3866 -1.2503 6 6 3.7208 2.7049 -1.2359 7 6 4.5544 2.7824 0.0461 8 6 3.6290 2.6605 1.2588 9 7 2.9075 1.3828 1.1991 10 6 2.1136 1.1692 2.4165 11 6 3.0371 1.0081 3.5965 12 7 4.3164 0.9754 3.3782 13 6 5.2073 0.8334 4.3911 14 6 6.5833 0.7976 4.1560 15 6 7.4525 0.6515 5.2141 16 6 6.9779 0.5336 6.5138 17 6 5.6248 0.5714 6.7720 18 6 4.7280 0.7186 5.7154 19 6 3.2747 0.7593 5.9300 20 8 2.7976 0.6657 7.0458 21 7 2.4874 0.9049 4.8388 22 6 1.1249 0.9481 4.9847 23 1 0.4900 0.4217 4.2873 24 6 0.5601 1.6700 6.0308 25 7 1.2594 2.5989 6.6398 26 14 -1.1934 1.3172 6.5693 27 1 -1.1867 0.2714 7.6235 28 1 -1.8052 2.5588 7.1076 29 1 -1.9825 0.8412 5.4049 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5401 0.9352 -0.0004 32 1 1.8500 -0.9352 0.0004 33 1 2.3139 1.3446 -2.1400 34 1 3.6419 0.5508 -1.2591 35 1 3.0221 3.5410 -1.2671 36 1 4.3805 2.7479 -2.1026 37 1 5.0781 3.7376 0.0825 38 1 5.2795 1.9686 0.0584 39 1 2.9130 3.4824 1.2533 40 1 4.2211 2.7009 2.1729 41 1 1.5091 0.2693 2.3027 42 1 1.4613 2.0269 2.5800 43 1 6.9641 0.8842 3.1491 44 1 8.5164 0.6236 5.0303 45 1 7.6754 0.4156 7.3299 46 1 5.2617 0.4829 7.7853 47 1 0.8654 3.1027 7.3692 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785997744.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:50 Heat of formation + Delta-G solvation = 32.985399 kcal Electronic energy + Delta-G solvation = -30465.127464 eV Core-core repulsion = 26612.790047 eV Total energy + Delta-G solvation = -3852.337417 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.24774 -40.24863 -39.19751 -38.03459 -35.57828 -34.98915 -34.32970 -33.70899 -31.93370 -30.70248 -30.49776 -28.19646 -27.61688 -24.94026 -24.48425 -24.07415 -22.84651 -22.39988 -20.60503 -20.55113 -20.51522 -19.47390 -18.57122 -17.50716 -17.00421 -16.71026 -16.40065 -16.14706 -15.83972 -15.54174 -15.46633 -15.39464 -15.05454 -14.83651 -14.63717 -14.50361 -14.00310 -13.89149 -13.74675 -13.64459 -13.61463 -13.08873 -12.97170 -12.89420 -12.57203 -12.49457 -12.35249 -12.25910 -12.13846 -11.93906 -11.53266 -11.36198 -11.30208 -11.13025 -10.79324 -10.44860 -10.23505 -10.16894 -9.90627 -9.14180 -8.78893 -8.52756 -6.49460 -0.09281 0.09854 1.30844 1.39471 1.39677 1.46871 1.55244 2.00661 2.25936 2.44832 2.87065 3.10530 3.28611 3.40275 3.79654 3.86121 3.97474 4.07040 4.11230 4.17418 4.23044 4.28819 4.42025 4.43938 4.48602 4.53313 4.58873 4.62597 4.67587 4.77887 4.93646 4.97790 5.03567 5.10887 5.13768 5.16023 5.18124 5.21860 5.34631 5.37319 5.42548 5.56823 5.57857 5.60781 5.76232 5.77856 5.80976 6.01384 6.17796 6.26971 6.40567 6.61395 6.84770 7.43134 7.63595 8.44659 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008240 B = 0.005787 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3397.138347 B = 4837.189993 C = 7544.434656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.152 4.152 3 C 0.109 3.891 4 H 0.037 0.963 5 C -0.098 4.098 6 C -0.117 4.117 7 C -0.104 4.104 8 C 0.058 3.942 9 N -0.507 5.507 10 C 0.136 3.864 11 C 0.352 3.648 12 N -0.525 5.525 13 C 0.136 3.864 14 C -0.123 4.123 15 C -0.072 4.072 16 C -0.150 4.150 17 C -0.068 4.068 18 C -0.240 4.240 19 C 0.495 3.505 20 O -0.555 6.555 21 N -0.370 5.370 22 C -0.401 4.401 23 H 0.120 0.880 24 C 0.031 3.969 25 N -0.851 5.851 26 Si 0.990 3.010 27 H -0.284 1.284 28 H -0.274 1.274 29 H -0.236 1.236 30 H 0.111 0.889 31 H 0.097 0.903 32 H 0.113 0.887 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.012 0.988 40 H 0.067 0.933 41 H 0.103 0.897 42 H 0.050 0.950 43 H 0.151 0.849 44 H 0.172 0.828 45 H 0.157 0.843 46 H 0.108 0.892 47 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.508 -1.208 -14.932 15.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.171 4.171 3 C 0.001 3.999 4 H 0.055 0.945 5 C -0.136 4.136 6 C -0.154 4.154 7 C -0.142 4.142 8 C -0.070 4.070 9 N -0.232 5.232 10 C 0.006 3.994 11 C 0.088 3.912 12 N -0.250 5.250 13 C 0.021 3.979 14 C -0.143 4.143 15 C -0.091 4.091 16 C -0.169 4.169 17 C -0.088 4.088 18 C -0.247 4.247 19 C 0.291 3.709 20 O -0.433 6.433 21 N -0.075 5.075 22 C -0.527 4.527 23 H 0.137 0.863 24 C -0.180 4.180 25 N -0.481 5.481 26 Si 0.811 3.189 27 H -0.210 1.210 28 H -0.199 1.199 29 H -0.158 1.158 30 H 0.130 0.870 31 H 0.115 0.885 32 H 0.131 0.869 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.030 0.970 40 H 0.085 0.915 41 H 0.121 0.879 42 H 0.068 0.932 43 H 0.168 0.832 44 H 0.189 0.811 45 H 0.175 0.825 46 H 0.126 0.874 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.951 -1.407 -14.817 16.029 hybrid contribution -1.976 0.623 2.167 2.998 sum 3.975 -0.783 -12.650 13.283 Atomic orbital electron populations 1.24026 0.95654 1.02633 0.99846 1.22875 0.95810 0.98076 1.00292 1.20917 0.93390 0.94762 0.90783 0.94505 1.21526 0.98307 0.98476 0.95294 1.21588 0.98875 0.97191 0.97747 1.21475 0.97598 1.02002 0.93080 1.22138 0.96373 0.87851 1.00599 1.61666 1.27364 1.34369 0.99789 1.20618 0.91374 1.02068 0.85327 1.23413 0.91161 0.90112 0.86509 1.68594 0.98924 1.26750 1.30778 1.19368 0.95603 0.95691 0.87205 1.21002 0.89040 1.03153 1.01099 1.21570 1.01234 0.95205 0.91111 1.21341 0.93460 1.03332 0.98722 1.21003 0.94115 0.96531 0.97122 1.21019 0.92857 1.13727 0.97103 1.18880 0.87333 0.79704 0.84970 1.90583 1.77092 1.51458 1.24186 1.42365 1.08746 1.50853 1.05530 1.19958 0.79821 1.34735 1.18204 0.86256 1.26400 1.04436 0.91929 0.95232 1.69925 1.40583 1.17373 1.20208 0.85016 0.76277 0.78004 0.79581 1.21002 1.19871 1.15815 0.87037 0.88478 0.86919 0.90005 0.91181 0.92408 0.89946 0.91084 0.91313 0.96996 0.91471 0.87890 0.93208 0.83152 0.81071 0.82532 0.87356 0.91509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.92 14.27 67.78 0.97 -2.95 16 2 C -0.15 -3.60 7.15 25.65 0.18 -3.42 16 3 C 0.11 2.75 2.21 44.20 0.10 2.85 16 4 H 0.04 0.96 7.78 -2.39 -0.02 0.94 16 5 C -0.10 -1.98 5.36 30.65 0.16 -1.81 16 6 C -0.12 -2.23 6.00 30.67 0.18 -2.05 16 7 C -0.10 -2.47 6.09 30.64 0.19 -2.28 16 8 C 0.06 1.84 5.05 86.32 0.44 2.27 16 9 N -0.51 -16.09 4.10 -880.04 -3.61 -19.70 16 10 C 0.14 5.17 3.86 85.56 0.33 5.50 16 11 C 0.35 16.30 7.06 137.94 0.97 17.27 16 12 N -0.52 -22.88 7.38 -179.52 -1.32 -24.20 16 13 C 0.14 5.92 6.63 39.65 0.26 6.18 16 14 C -0.12 -4.10 10.03 22.48 0.23 -3.87 16 15 C -0.07 -1.96 10.00 22.30 0.22 -1.73 16 16 C -0.15 -4.64 10.02 22.32 0.22 -4.41 16 17 C -0.07 -2.87 9.68 22.44 0.22 -2.65 16 18 C -0.24 -11.83 5.89 -19.97 -0.12 -11.95 16 19 C 0.49 28.58 6.93 86.44 0.60 29.18 16 20 O -0.55 -35.50 14.31 -4.41 -0.06 -35.56 16 21 N -0.37 -19.98 2.68 -460.23 -1.23 -21.21 16 22 C -0.40 -21.43 8.12 84.07 0.68 -20.74 16 23 H 0.12 5.76 7.23 -2.91 -0.02 5.74 16 24 C 0.03 1.70 4.37 84.98 0.37 2.08 16 25 N -0.85 -50.61 11.57 21.68 0.25 -50.35 16 26 Si 0.99 42.32 29.59 68.60 2.03 44.35 16 27 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 28 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 29 H -0.24 -8.83 7.11 99.48 0.71 -8.13 16 30 H 0.11 2.06 8.06 -2.91 -0.02 2.04 16 31 H 0.10 2.01 7.83 -2.91 -0.02 1.99 16 32 H 0.11 2.69 8.06 -2.91 -0.02 2.66 16 33 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 35 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 36 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 40 H 0.07 2.54 5.78 -2.39 -0.01 2.53 16 41 H 0.10 3.76 6.20 -2.38 -0.01 3.75 16 42 H 0.05 2.03 7.86 -2.39 -0.02 2.01 16 43 H 0.15 4.21 8.06 -2.91 -0.02 4.19 16 44 H 0.17 2.94 8.06 -2.91 -0.02 2.91 16 45 H 0.16 3.57 8.06 -2.91 -0.02 3.55 16 46 H 0.11 4.76 7.83 -2.91 -0.02 4.74 16 47 H 0.28 15.51 8.31 -92.70 -0.77 14.74 16 Total: -1.00 -72.66 375.77 3.22 -69.44 By element: Atomic # 1 Polarization: 28.83 SS G_CDS: 0.96 Total: 29.80 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: 6.21 Total: 7.45 kcal Atomic # 7 Polarization: -109.55 SS G_CDS: -5.92 Total: -115.46 kcal Atomic # 8 Polarization: -35.50 SS G_CDS: -0.06 Total: -35.56 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -72.66 3.22 -69.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785997744.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.423 kcal (2) G-P(sol) polarization free energy of solvation -72.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds