Wall clock time and date at job start Sat Apr 11 2020 05:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36961 * 120.00318 * 2 1 4 4 H 1.07999 * 120.00094 * 173.51626 * 3 2 1 5 5 C 1.38992 * 119.99544 * 353.51827 * 3 2 1 6 6 N 1.31394 * 120.00366 * 5.11522 * 5 3 2 7 7 Si 1.86798 * 119.99546 * 185.11556 * 5 3 2 8 8 H 1.48508 * 109.47251 * 60.00251 * 7 5 3 9 9 H 1.48498 * 109.47162 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47601 * 300.00113 * 7 5 3 11 11 C 1.34781 * 119.99773 * 179.97438 * 2 1 3 12 12 O 1.21616 * 119.99847 * 5.75214 * 11 2 1 13 13 C 1.47441 * 119.99680 * 185.74441 * 11 2 1 14 14 C 1.36673 * 125.77413 * 174.18394 * 13 11 2 15 15 N 1.34834 * 106.82302 * 179.74013 * 14 13 11 16 16 C 1.46504 * 126.59244 * 180.26385 * 15 14 13 17 17 C 1.53001 * 109.47298 * 124.99905 * 16 15 14 18 18 N 1.46497 * 109.47021 * 180.02562 * 17 16 15 19 19 C 1.34782 * 119.99867 * 179.97438 * 18 17 16 20 20 O 1.21505 * 119.99841 * 0.02562 * 19 18 17 21 21 O 1.34639 * 119.99909 * 179.97438 * 19 18 17 22 22 C 1.45197 * 116.99891 * 180.02562 * 21 19 18 23 23 C 1.53000 * 109.47108 * 60.00034 * 22 21 19 24 24 C 1.52994 * 109.47200 * 180.02562 * 22 21 19 25 25 C 1.52996 * 109.47298 * 300.00559 * 22 21 19 26 26 N 1.40209 * 106.81906 * 0.26089 * 15 14 13 27 27 N 1.28756 * 108.38289 * 0.02562 * 26 15 14 28 28 H 1.08994 * 109.47391 * 184.65196 * 1 2 3 29 29 H 1.09003 * 109.46994 * 304.64938 * 1 2 3 30 30 H 1.09000 * 109.46857 * 64.64461 * 1 2 3 31 31 H 0.97000 * 120.00124 * 179.97438 * 6 5 3 32 32 H 1.07994 * 126.58629 * 0.02562 * 14 13 11 33 33 H 1.09000 * 109.46808 * 245.00064 * 16 15 14 34 34 H 1.09001 * 109.46608 * 4.99855 * 16 15 14 35 35 H 1.09005 * 109.46975 * 300.00178 * 17 16 15 36 36 H 1.09001 * 109.47066 * 59.99913 * 17 16 15 37 37 H 0.96998 * 120.00400 * 359.97438 * 18 17 16 38 38 H 1.08998 * 109.46891 * 60.00019 * 23 22 21 39 39 H 1.09005 * 109.47421 * 179.97438 * 23 22 21 40 40 H 1.08994 * 109.47453 * 300.00153 * 23 22 21 41 41 H 1.08995 * 109.47649 * 60.00103 * 24 22 21 42 42 H 1.09005 * 109.47269 * 180.02562 * 24 22 21 43 43 H 1.09002 * 109.47384 * 299.99859 * 24 22 21 44 44 H 1.09004 * 109.47691 * 59.99927 * 25 22 21 45 45 H 1.08996 * 109.47456 * 180.02562 * 25 22 21 46 46 H 1.09006 * 109.46874 * 299.99875 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1861 0.0000 4 1 3.2246 1.1890 0.1056 5 6 1.4615 2.3859 -0.1359 6 7 0.1479 2.3903 -0.1633 7 14 2.4041 3.9922 -0.2796 8 1 3.2829 3.9452 -1.4759 9 1 1.4455 5.1183 -0.4142 10 1 3.2335 4.1901 0.9363 11 6 2.1388 -1.1673 0.0005 12 8 1.5353 -2.2178 -0.1046 13 6 3.6077 -1.1704 0.1283 14 6 4.3963 -2.2795 0.2547 15 7 5.6702 -1.8452 0.3369 16 6 6.8688 -2.6759 0.4766 17 6 7.8531 -2.3442 -0.6467 18 7 9.0514 -3.1753 -0.5073 19 6 10.0613 -3.0555 -1.3917 20 8 9.9781 -2.2577 -2.3044 21 8 11.1629 -3.8190 -1.2633 22 6 12.2107 -3.6359 -2.2516 23 6 12.7060 -2.1890 -2.2077 24 6 13.3725 -4.5828 -1.9444 25 6 11.6574 -3.9434 -3.6444 26 7 5.6273 -0.4457 0.2628 27 7 4.3976 -0.0829 0.1446 28 1 -0.3634 -1.0242 0.0833 29 1 -0.3633 0.5843 0.8454 30 1 -0.3633 0.4401 -0.9287 31 1 -0.3325 3.2277 -0.2577 32 1 4.0635 -3.3066 0.2789 33 1 7.3375 -2.4781 1.4406 34 1 6.5905 -3.7281 0.4170 35 1 7.3843 -2.5419 -1.6108 36 1 8.1313 -1.2919 -0.5871 37 1 9.1180 -3.8119 0.2215 38 1 13.1002 -1.9699 -1.2154 39 1 13.4930 -2.0517 -2.9493 40 1 11.8782 -1.5147 -2.4268 41 1 13.0194 -5.6135 -1.9759 42 1 14.1594 -4.4451 -2.6861 43 1 13.7669 -4.3641 -0.9520 44 1 10.8294 -3.2692 -3.8636 45 1 12.4441 -3.8065 -4.3863 46 1 11.3045 -4.9743 -3.6757 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824863770.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:00 Heat of formation + Delta-G solvation = -12.655011 kcal Electronic energy + Delta-G solvation = -29010.658149 eV Core-core repulsion = 24745.492352 eV Total energy + Delta-G solvation = -4265.165797 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.04834 -41.84456 -40.05543 -38.73033 -36.91224 -36.76260 -35.37653 -34.58391 -33.34535 -31.87961 -30.45526 -28.36801 -28.30177 -28.27598 -26.59273 -25.62978 -23.70332 -23.13305 -22.68387 -21.30103 -20.93798 -19.79214 -19.18999 -18.02196 -17.67269 -17.50017 -17.17743 -17.00898 -16.30110 -16.12653 -16.10173 -15.81765 -15.68498 -15.43963 -15.27536 -15.13737 -14.60436 -14.41820 -13.75790 -13.60086 -13.42640 -13.38881 -13.35412 -13.31455 -13.04949 -12.91448 -12.86218 -12.70971 -12.59175 -12.51654 -12.36202 -12.34628 -12.10079 -11.40748 -11.27291 -11.17962 -11.13664 -10.96688 -10.53011 -10.38764 -10.15351 -9.87203 -8.20752 -5.78968 0.26976 0.81230 0.88733 1.44741 1.46360 1.50618 1.56404 1.69904 2.31098 2.50449 2.85926 3.10444 3.26290 3.35297 3.58045 3.68033 3.74999 3.79812 3.94890 4.07292 4.17000 4.24585 4.29321 4.49592 4.59411 4.61549 4.64060 4.75994 4.77161 4.81517 4.85672 4.89230 4.98350 5.03097 5.18682 5.19111 5.28160 5.33882 5.43454 5.54136 5.59261 5.72844 5.88578 6.31352 6.62833 7.01942 7.23740 7.28575 7.62425 7.93175 8.73592 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018601 B = 0.002090 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.969621 B =13394.009489 C =14390.999340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.135 3.865 2 N -0.437 5.437 3 C -0.354 4.354 4 H 0.156 0.844 5 C -0.017 4.017 6 N -0.902 5.902 7 Si 0.991 3.009 8 H -0.272 1.272 9 H -0.277 1.277 10 H -0.267 1.267 11 C 0.501 3.499 12 O -0.637 6.637 13 C -0.088 4.088 14 C 0.101 3.899 15 N -0.351 5.351 16 C 0.114 3.886 17 C 0.133 3.867 18 N -0.691 5.691 19 C 0.646 3.354 20 O -0.595 6.595 21 O -0.362 6.362 22 C 0.126 3.874 23 C -0.182 4.182 24 C -0.135 4.135 25 C -0.182 4.182 26 N -0.103 5.103 27 N -0.222 5.222 28 H 0.040 0.960 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.268 0.732 32 H 0.239 0.761 33 H 0.132 0.868 34 H 0.157 0.843 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.426 0.574 38 H 0.064 0.936 39 H 0.089 0.911 40 H 0.058 0.942 41 H 0.072 0.928 42 H 0.100 0.900 43 H 0.071 0.929 44 H 0.058 0.942 45 H 0.089 0.911 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.296 -15.764 0.399 30.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.008 4.008 2 N -0.151 5.151 3 C -0.483 4.483 4 H 0.173 0.827 5 C -0.217 4.217 6 N -0.543 5.543 7 Si 0.815 3.185 8 H -0.198 1.198 9 H -0.202 1.202 10 H -0.191 1.191 11 C 0.290 3.710 12 O -0.528 6.528 13 C -0.227 4.227 14 C -0.056 4.056 15 N -0.138 5.138 16 C -0.006 4.006 17 C 0.009 3.991 18 N -0.353 5.353 19 C 0.400 3.600 20 O -0.485 6.485 21 O -0.277 6.277 22 C 0.090 3.910 23 C -0.239 4.239 24 C -0.192 4.192 25 C -0.239 4.239 26 N -0.082 5.082 27 N -0.093 5.093 28 H 0.059 0.941 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.255 0.745 33 H 0.149 0.851 34 H 0.175 0.825 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.265 0.735 38 H 0.083 0.917 39 H 0.108 0.892 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.118 0.882 43 H 0.090 0.910 44 H 0.077 0.923 45 H 0.107 0.893 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 26.744 -14.447 -0.123 30.397 hybrid contribution -0.780 0.173 -0.003 0.799 sum 25.964 -14.273 -0.126 29.629 Atomic orbital electron populations 1.21431 0.79536 0.97400 1.02460 1.43962 1.06739 1.05706 1.58743 1.21739 0.96496 0.82633 1.47475 0.82729 1.26278 0.96557 1.02854 0.96017 1.70337 1.07095 1.28084 1.48789 0.85007 0.77668 0.76587 0.79244 1.19753 1.20193 1.19142 1.16948 0.85235 0.83531 0.85312 1.90568 1.69318 1.31682 1.61206 1.21482 0.95510 0.89864 1.15828 1.23624 0.82736 1.01646 0.97597 1.50336 1.07029 1.07115 1.49298 1.22364 0.81365 0.96024 1.00819 1.21268 0.83642 0.95305 0.98898 1.44148 1.15584 1.44196 1.31410 1.18214 0.80752 0.79438 0.81643 1.90952 1.81690 1.40611 1.35273 1.86302 1.26250 1.60166 1.54951 1.22408 0.84959 0.97218 0.86405 1.22491 1.02600 0.95494 1.03348 1.21882 0.94889 0.98514 1.03907 1.22488 1.03080 1.02374 0.95943 1.81869 1.13517 0.89127 1.23706 1.74609 0.97476 1.25961 1.11283 0.94125 0.92095 0.93007 0.92173 0.74472 0.85050 0.82484 0.91602 0.91563 0.73545 0.91708 0.89244 0.92338 0.90898 0.88172 0.90978 0.92334 0.89266 0.91615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 7.17 8.85 127.77 1.13 8.31 16 2 N -0.44 -24.23 3.02 -662.62 -2.00 -26.23 16 3 C -0.35 -19.76 9.34 84.07 0.79 -18.98 16 4 H 0.16 8.46 4.02 -39.33 -0.16 8.30 16 5 C -0.02 -0.90 5.46 84.94 0.46 -0.44 16 6 N -0.90 -49.66 9.45 21.67 0.20 -49.45 16 7 Si 0.99 43.89 29.56 68.60 2.03 45.92 16 8 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 9 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 10 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 11 C 0.50 25.80 7.62 86.67 0.66 26.46 16 12 O -0.64 -33.75 16.23 -4.08 -0.07 -33.81 16 13 C -0.09 -3.78 6.74 40.81 0.28 -3.50 16 14 C 0.10 2.97 11.28 83.87 0.95 3.91 16 15 N -0.35 -8.85 3.69 -347.01 -1.28 -10.13 16 16 C 0.11 1.34 6.65 86.38 0.57 1.91 16 17 C 0.13 2.22 5.88 86.38 0.51 2.72 16 18 N -0.69 -9.21 5.56 -590.84 -3.29 -12.50 16 19 C 0.65 13.12 8.06 129.79 1.05 14.17 16 20 O -0.59 -16.49 11.88 19.83 0.24 -16.25 16 21 O -0.36 -6.19 9.94 -55.49 -0.55 -6.74 16 22 C 0.13 1.83 1.13 -10.80 -0.01 1.82 16 23 C -0.18 -2.83 8.37 71.98 0.60 -2.23 16 24 C -0.13 -1.06 8.85 71.98 0.64 -0.42 16 25 C -0.18 -2.77 8.37 71.98 0.60 -2.17 16 26 N -0.10 -3.74 13.64 37.02 0.51 -3.24 16 27 N -0.22 -9.86 8.72 -50.00 -0.44 -10.30 16 28 H 0.04 2.06 6.94 -2.39 -0.02 2.04 16 29 H 0.06 3.31 7.00 -2.39 -0.02 3.29 16 30 H 0.05 2.85 7.10 -2.39 -0.02 2.83 16 31 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 32 H 0.24 4.89 8.06 -2.91 -0.02 4.87 16 33 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.16 0.47 8.08 -2.39 -0.02 0.45 16 35 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 36 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.43 2.38 8.58 -92.71 -0.80 1.59 16 38 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 40 H 0.06 1.30 5.88 -2.39 -0.01 1.29 16 41 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.10 0.43 8.14 -2.38 -0.02 0.41 16 43 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 44 H 0.06 1.28 5.88 -2.39 -0.01 1.27 16 45 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 Total: -1.00 -79.97 380.90 3.65 -76.32 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: 0.08 Total: 14.85 kcal Atomic # 6 Polarization: 23.35 SS G_CDS: 8.22 Total: 31.57 kcal Atomic # 7 Polarization: -105.55 SS G_CDS: -6.30 Total: -111.84 kcal Atomic # 8 Polarization: -56.43 SS G_CDS: -0.38 Total: -56.81 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -79.97 3.65 -76.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824863770.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.664 kcal (2) G-P(sol) polarization free energy of solvation -79.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds