Wall clock time and date at job start Sat Apr 11 2020 05:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.47028 * 2 1 4 4 C 1.52999 * 109.47023 * 240.00610 * 2 1 3 5 5 O 1.45201 * 109.47441 * 120.00211 * 2 1 3 6 6 C 1.34638 * 116.99579 * 59.99828 * 5 2 1 7 7 O 1.21513 * 120.00154 * 0.02562 * 6 5 2 8 8 N 1.34780 * 119.99505 * 180.02562 * 6 5 2 9 9 C 1.46498 * 119.99856 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47278 * 179.97438 * 9 8 6 11 11 N 1.46498 * 109.47278 * 180.02562 * 10 9 8 12 12 C 1.35307 * 125.87122 * 125.32273 * 11 10 9 13 13 C 1.35348 * 106.17855 * 180.11522 * 12 11 10 14 14 C 1.50700 * 126.75278 * 179.85505 * 13 12 11 15 15 N 1.46501 * 109.47206 * 94.71543 * 14 13 12 16 16 C 1.34772 * 119.99823 * 179.72209 * 15 14 13 17 17 O 1.21695 * 120.00176 * 0.27723 * 16 15 14 18 18 C 1.46375 * 120.00131 * 180.27515 * 16 15 14 19 19 H 1.08005 * 119.99733 * 353.94178 * 18 16 15 20 20 C 1.40042 * 120.00170 * 173.94085 * 18 16 15 21 21 N 1.30669 * 120.00455 * 6.15206 * 20 18 16 22 22 Si 1.86803 * 119.99867 * 186.14923 * 20 18 16 23 23 H 1.48498 * 109.47177 * 94.98772 * 22 20 18 24 24 H 1.48502 * 109.47127 * 214.98238 * 22 20 18 25 25 H 1.48493 * 109.47253 * 334.98410 * 22 20 18 26 26 N 1.33773 * 106.49730 * 359.59596 * 13 12 11 27 27 N 1.28638 * 108.88112 * 0.25837 * 26 13 12 28 28 H 1.08999 * 109.47116 * 299.99670 * 1 2 3 29 29 H 1.09007 * 109.47408 * 59.99606 * 1 2 3 30 30 H 1.08996 * 109.47069 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46713 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.46882 * 300.00050 * 3 2 1 33 33 H 1.08999 * 109.46903 * 60.00199 * 3 2 1 34 34 H 1.09002 * 109.47183 * 299.99580 * 4 2 1 35 35 H 1.08998 * 109.47749 * 59.99422 * 4 2 1 36 36 H 1.09005 * 109.47217 * 180.02562 * 4 2 1 37 37 H 0.97001 * 119.99901 * 359.97438 * 8 6 5 38 38 H 1.09003 * 109.47581 * 59.99501 * 9 8 6 39 39 H 1.09002 * 109.46887 * 299.99929 * 9 8 6 40 40 H 1.09003 * 109.46966 * 59.99822 * 10 9 8 41 41 H 1.09001 * 109.46650 * 299.99986 * 10 9 8 42 42 H 1.07999 * 126.91297 * 359.97438 * 12 11 10 43 43 H 1.09002 * 109.47180 * 334.71245 * 14 13 12 44 44 H 1.09008 * 109.46803 * 214.71755 * 14 13 12 45 45 H 0.96992 * 119.99679 * 359.97438 * 15 14 13 46 46 H 0.97000 * 120.00488 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7211 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6522 -1.9724 1.3382 7 8 0.9516 -2.5097 0.5034 8 7 2.0673 -2.6655 2.4170 9 6 1.6741 -4.0669 2.5829 10 6 2.2742 -4.6150 3.8793 11 7 1.8815 -6.0166 4.0449 12 6 2.7236 -7.0591 4.2317 13 6 1.9435 -8.1605 4.3328 14 6 2.4083 -9.5784 4.5445 15 7 2.3753 -9.8947 5.9746 16 6 2.7458 -11.1176 6.4030 17 8 3.1127 -11.9575 5.6023 18 6 2.7071 -11.4356 7.8312 19 1 2.4764 -10.6635 8.5503 20 6 2.9693 -12.7410 8.2653 21 7 3.3655 -13.6466 7.4107 22 14 2.7526 -13.1877 10.0661 23 1 1.4018 -13.7688 10.2729 24 1 3.7842 -14.1818 10.4571 25 1 2.8996 -11.9678 10.8999 26 7 0.6785 -7.7423 4.2134 27 7 0.6758 -6.4672 4.0439 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6767 -1.7488 -1.2494 35 1 1.6766 -0.2073 -2.1393 36 1 3.1300 -0.7215 -1.2491 37 1 2.6269 -2.2366 3.0832 38 1 2.0412 -4.6498 1.7382 39 1 0.5872 -4.1365 2.6273 40 1 1.9074 -4.0322 4.7242 41 1 3.3611 -4.5454 3.8343 42 1 3.8015 -7.0205 4.2867 43 1 3.4269 -9.6863 4.1719 44 1 1.7503 -10.2606 4.0061 45 1 2.0832 -9.2251 6.6127 46 1 3.5467 -14.5509 7.7112 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849140081.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:14 Heat of formation + Delta-G solvation = -19.999688 kcal Electronic energy + Delta-G solvation = -27987.727848 eV Core-core repulsion = 23722.243562 eV Total energy + Delta-G solvation = -4265.484286 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.29043 -41.23259 -38.20546 -37.28517 -36.26160 -34.81462 -34.15642 -33.38772 -32.33264 -30.80113 -29.79666 -27.89321 -27.83532 -27.03848 -25.08207 -25.02545 -22.59013 -21.97082 -21.14533 -20.46859 -19.65233 -18.76532 -17.65054 -17.30145 -16.93197 -16.80199 -16.47895 -15.55439 -15.39904 -15.23475 -15.03290 -14.85103 -14.64701 -14.40492 -13.96735 -13.90229 -13.47800 -13.04407 -13.00046 -12.91772 -12.68922 -12.45211 -12.38998 -12.38177 -12.13696 -11.85991 -11.81299 -11.61710 -11.39741 -11.14071 -10.96175 -10.84676 -10.64119 -10.53508 -10.44357 -10.22391 -10.15484 -9.81142 -9.26573 -8.82477 -7.59207 -7.50394 -6.17367 -4.61166 1.35740 1.57523 2.25939 2.35650 2.56693 3.16401 3.23613 3.26830 3.62672 3.78731 4.05196 4.14113 4.22139 4.27247 4.41260 4.41417 4.48598 4.61414 4.87142 4.99277 5.00995 5.02953 5.06848 5.12457 5.21766 5.23258 5.25490 5.32036 5.38435 5.49416 5.51728 5.56829 5.82573 5.82857 5.90206 6.02574 6.05985 6.40678 6.44178 6.51079 6.81028 7.46216 7.86611 7.93361 8.08098 8.35272 8.52585 9.04977 9.53887 10.61394 10.79566 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.040291 B = 0.001460 C = 0.001446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.785531 B =19174.730413 C =19361.335015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.137 3.863 3 C -0.141 4.141 4 C -0.185 4.185 5 O -0.364 6.364 6 C 0.654 3.346 7 O -0.560 6.560 8 N -0.711 5.711 9 C 0.126 3.874 10 C 0.110 3.890 11 N -0.299 5.299 12 C -0.035 4.035 13 C -0.015 4.015 14 C 0.215 3.785 15 N -0.761 5.761 16 C 0.557 3.443 17 O -0.580 6.580 18 C -0.545 4.545 19 H 0.068 0.932 20 C 0.088 3.912 21 N -0.767 5.767 22 Si 0.907 3.093 23 H -0.272 1.272 24 H -0.279 1.279 25 H -0.265 1.265 26 N -0.248 5.248 27 N -0.088 5.088 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.408 0.592 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.108 0.892 41 H 0.114 0.886 42 H 0.194 0.806 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.381 0.619 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.666 31.951 -12.040 34.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.100 3.900 3 C -0.198 4.198 4 C -0.242 4.242 5 O -0.278 6.278 6 C 0.407 3.593 7 O -0.448 6.448 8 N -0.372 5.372 9 C 0.002 3.998 10 C -0.013 4.013 11 N -0.093 5.093 12 C -0.186 4.186 13 C -0.153 4.153 14 C 0.089 3.911 15 N -0.418 5.418 16 C 0.361 3.639 17 O -0.463 6.463 18 C -0.582 4.582 19 H 0.086 0.914 20 C -0.131 4.131 21 N -0.396 5.396 22 Si 0.732 3.268 23 H -0.198 1.198 24 H -0.205 1.205 25 H -0.190 1.190 26 N -0.116 5.116 27 N -0.067 5.067 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.107 0.893 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.243 0.757 38 H 0.100 0.900 39 H 0.111 0.889 40 H 0.126 0.874 41 H 0.132 0.868 42 H 0.211 0.789 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.212 0.788 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.844 31.303 -13.300 34.022 hybrid contribution 1.170 0.283 1.536 1.952 sum 0.327 31.586 -11.764 33.707 Atomic orbital electron populations 1.22530 0.93798 1.05201 1.02684 1.22126 0.94501 0.91507 0.81852 1.21874 1.02302 0.92361 1.03282 1.22530 1.01614 1.03556 0.96500 1.86294 1.71513 1.23257 1.46784 1.17936 0.78810 0.80656 0.81942 1.90956 1.40510 1.70380 1.42938 1.44343 1.56344 1.12099 1.24382 1.21470 1.02137 0.79456 0.96706 1.22015 1.02215 0.77534 0.99505 1.47012 1.05888 1.08353 1.48090 1.23486 0.99246 0.86517 1.09307 1.22392 0.89356 0.97887 1.05620 1.19078 0.99877 0.85491 0.86691 1.46160 1.74650 1.16706 1.04258 1.18221 0.76942 0.78917 0.89846 1.90606 1.51761 1.47109 1.56830 1.20863 1.50999 0.95601 0.90703 0.91417 1.25689 0.92613 0.96091 0.98737 1.70021 1.31929 1.02811 1.34851 0.86366 0.78501 0.78838 0.83077 1.19779 1.20475 1.18951 1.75155 1.20440 1.01089 1.14891 1.78324 1.02270 1.06299 1.19816 0.92055 0.90953 0.89333 0.91399 0.89982 0.91385 0.89366 0.90941 0.92084 0.75667 0.89958 0.88905 0.87427 0.86752 0.78929 0.91380 0.91306 0.78770 0.92109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.28 8.37 37.16 0.31 -0.97 16 2 C 0.14 0.92 1.13 -90.62 -0.10 0.82 16 3 C -0.14 -0.60 8.85 37.16 0.33 -0.27 16 4 C -0.18 -1.27 8.37 37.16 0.31 -0.96 16 5 O -0.36 -2.90 9.94 -40.32 -0.40 -3.30 16 6 C 0.65 5.86 8.06 54.06 0.44 6.30 16 7 O -0.56 -6.64 11.88 -19.28 -0.23 -6.87 16 8 N -0.71 -4.22 5.56 -65.28 -0.36 -4.58 16 9 C 0.13 0.87 5.80 -4.04 -0.02 0.85 16 10 C 0.11 0.60 6.57 -4.04 -0.03 0.57 16 11 N -0.30 -3.22 3.44 -61.26 -0.21 -3.43 16 12 C -0.04 -0.41 11.50 -17.05 -0.20 -0.61 16 13 C -0.01 -0.24 6.61 -82.78 -0.55 -0.79 16 14 C 0.22 4.18 6.23 -5.19 -0.03 4.15 16 15 N -0.76 -17.24 5.54 -62.90 -0.35 -17.59 16 16 C 0.56 15.87 7.74 -12.99 -0.10 15.77 16 17 O -0.58 -18.72 15.05 5.19 0.08 -18.65 16 18 C -0.54 -15.46 9.53 -35.63 -0.34 -15.80 16 19 H 0.07 1.77 7.85 -52.48 -0.41 1.36 16 20 C 0.09 2.48 5.49 -17.37 -0.10 2.38 16 21 N -0.77 -23.04 11.85 55.55 0.66 -22.38 16 22 Si 0.91 20.22 29.56 -169.99 -5.03 15.20 16 23 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 24 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 26 N -0.25 -4.37 12.41 33.29 0.41 -3.95 16 27 N -0.09 -1.30 12.92 60.35 0.78 -0.52 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.09 0.84 5.88 -51.93 -0.31 0.53 16 31 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.09 0.82 5.88 -51.93 -0.31 0.52 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.41 1.19 8.58 -40.82 -0.35 0.84 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.09 0.84 8.12 -51.93 -0.42 0.42 16 40 H 0.11 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.11 0.26 8.07 -51.93 -0.42 -0.16 16 42 H 0.19 1.56 8.06 -52.49 -0.42 1.14 16 43 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.07 1.46 8.14 -51.92 -0.42 1.04 16 45 H 0.38 7.89 8.44 -40.82 -0.34 7.54 16 46 H 0.27 7.29 8.29 -40.82 -0.34 6.95 16 LS Contribution 392.48 15.07 5.91 5.91 Total: -1.00 -39.08 392.48 -5.58 -44.66 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -6.77 Total: 4.07 kcal Atomic # 6 Polarization: 11.51 SS G_CDS: -0.08 Total: 11.43 kcal Atomic # 7 Polarization: -53.39 SS G_CDS: 0.93 Total: -52.46 kcal Atomic # 8 Polarization: -28.26 SS G_CDS: -0.55 Total: -28.82 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.03 Total: 15.20 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -39.08 -5.58 -44.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849140081.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.661 kcal (2) G-P(sol) polarization free energy of solvation -39.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds