Wall clock time and date at job start Sat Apr 11 2020 05:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.38727 * 2 1 4 4 C 1.53026 * 109.43052 * 119.87402 * 2 1 3 5 5 C 1.53372 * 109.75057 * 191.80897 * 4 2 1 6 6 C 1.50946 * 108.20197 * 309.35260 * 5 4 2 7 7 N 1.30129 * 128.28855 * 196.98003 * 6 5 4 8 8 N 1.40314 * 108.12809 * 179.97438 * 7 6 5 9 9 H 0.97001 * 126.00145 * 179.91576 * 8 7 6 10 10 C 1.35196 * 107.99004 * 359.64183 * 8 7 6 11 11 C 1.34573 * 107.62051 * 0.26238 * 10 8 7 12 12 C 1.50880 * 128.32677 * 179.73100 * 11 10 8 13 13 H 1.08999 * 109.71761 * 316.40059 * 12 11 10 14 14 C 1.50699 * 109.71844 * 77.05411 * 12 11 10 15 15 O 1.21272 * 120.00002 * 32.26910 * 14 12 11 16 16 N 1.34778 * 119.99841 * 212.27204 * 14 12 11 17 17 C 1.46502 * 120.00006 * 180.02562 * 16 14 12 18 18 C 1.50700 * 109.47306 * 179.97438 * 17 16 14 19 19 C 1.38628 * 119.74889 * 269.72441 * 18 17 16 20 20 C 1.37613 * 120.24957 * 179.75994 * 19 18 17 21 21 C 1.40723 * 119.74276 * 0.53584 * 20 19 18 22 22 C 1.41393 * 120.24451 * 179.74495 * 21 20 19 23 23 H 1.07999 * 120.00317 * 24.98217 * 22 21 20 24 24 C 1.39945 * 120.00175 * 204.98839 * 22 21 20 25 25 N 1.30824 * 119.99718 * 18.97177 * 24 22 21 26 26 Si 1.86797 * 120.00139 * 198.97901 * 24 22 21 27 27 H 1.48507 * 109.47239 * 89.99734 * 26 24 22 28 28 H 1.48494 * 109.47138 * 209.99512 * 26 24 22 29 29 H 1.48499 * 109.47496 * 329.99595 * 26 24 22 30 30 C 1.40715 * 119.50969 * 359.71634 * 21 20 19 31 31 C 1.37611 * 119.74728 * 0.02562 * 30 21 20 32 32 H 1.08998 * 109.47080 * 305.49109 * 1 2 3 33 33 H 1.09001 * 109.46691 * 65.49117 * 1 2 3 34 34 H 1.08997 * 109.46926 * 185.48762 * 1 2 3 35 35 H 1.08998 * 109.42294 * 71.72515 * 4 2 1 36 36 H 1.09001 * 109.42645 * 311.89180 * 4 2 1 37 37 H 1.09001 * 109.71494 * 189.67801 * 5 4 2 38 38 H 1.08996 * 109.71701 * 69.02703 * 5 4 2 39 39 H 1.07998 * 126.19184 * 180.27859 * 10 8 7 40 40 H 0.96998 * 119.99796 * 359.97438 * 16 14 12 41 41 H 1.08999 * 109.46868 * 300.00124 * 17 16 14 42 42 H 1.09000 * 109.47130 * 59.99383 * 17 16 14 43 43 H 1.08007 * 119.87568 * 0.02562 * 19 18 17 44 44 H 1.08000 * 120.13361 * 180.28163 * 20 19 18 45 45 H 0.97003 * 119.99962 * 180.02562 * 25 24 22 46 46 H 1.08005 * 120.12238 * 180.02562 * 30 21 20 47 47 H 1.07997 * 119.88157 * 180.02562 * 31 30 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8918 1.0282 0.0000 4 6 2.0391 -0.7188 1.2513 5 6 3.5440 -0.4720 1.4147 6 6 4.2195 -0.7933 0.1037 7 7 5.4824 -1.0136 -0.1199 8 7 5.6448 -1.2715 -1.4895 9 1 6.4825 -1.4678 -1.9374 10 6 4.4276 -1.2044 -2.0742 11 6 3.5307 -0.9099 -1.1152 12 6 2.0403 -0.7203 -1.2544 13 1 1.8271 -0.1172 -2.1369 14 6 1.3666 -2.0625 -1.3798 15 8 1.8298 -3.0289 -0.8122 16 7 0.2492 -2.1887 -2.1227 17 6 -0.4062 -3.4934 -2.2442 18 6 -1.6245 -3.3638 -3.1217 19 6 -2.8527 -3.0634 -2.5534 20 6 -3.9710 -2.9379 -3.3455 21 6 -3.8663 -3.1268 -4.7360 22 6 -5.0095 -3.0057 -5.5593 23 1 -5.8443 -2.4002 -5.2385 24 6 -5.0593 -3.6704 -6.7897 25 7 -4.2541 -4.6746 -7.0238 26 14 -6.2755 -3.1240 -8.0980 27 1 -5.6441 -2.0939 -8.9616 28 1 -6.6686 -4.2915 -8.9270 29 1 -7.4806 -2.5519 -7.4456 30 6 -2.6155 -3.4366 -5.3012 31 6 -1.5096 -3.5520 -4.4904 32 1 -0.3633 0.5966 0.8367 33 1 -0.3633 0.4263 -0.9351 34 1 -0.3633 -1.0229 0.0983 35 1 1.8557 -1.7889 1.1545 36 1 1.5124 -0.3393 2.1270 37 1 3.9392 -1.1166 2.1998 38 1 3.7194 0.5724 1.6725 39 1 4.2138 -1.3594 -3.1214 40 1 -0.1215 -1.4157 -2.5763 41 1 0.2870 -4.2082 -2.6875 42 1 -0.7059 -3.8428 -1.2562 43 1 -2.9315 -2.9232 -1.4853 44 1 -4.9261 -2.6993 -2.9013 45 1 -4.2883 -5.1351 -7.8768 46 1 -2.5237 -3.5832 -6.3673 47 1 -0.5484 -3.7893 -4.9219 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880399708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:21 Heat of formation + Delta-G solvation = 33.440518 kcal Electronic energy + Delta-G solvation = -28697.448898 eV Core-core repulsion = 24845.131216 eV Total energy + Delta-G solvation = -3852.317682 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.71475 -39.56324 -37.76747 -36.65628 -34.67559 -33.45586 -32.71576 -31.17572 -30.37497 -29.65777 -29.37442 -27.32514 -26.28029 -24.19826 -23.55375 -21.71247 -21.09354 -20.88048 -20.21171 -20.09831 -18.82886 -17.86734 -17.40158 -16.47999 -15.82593 -15.50444 -15.29905 -14.98334 -14.70142 -14.30412 -14.10626 -13.99397 -13.62218 -13.57181 -13.27504 -13.03037 -12.86658 -12.70424 -12.56119 -12.10210 -12.06366 -11.96425 -11.61309 -11.52618 -11.24973 -11.21488 -11.14867 -10.95476 -10.80633 -10.60728 -10.56013 -10.31810 -9.73222 -9.55296 -9.48613 -9.42998 -9.22967 -8.58659 -8.51766 -7.58426 -7.46174 -6.89109 -4.47359 1.81385 2.51968 2.65744 2.74564 2.96159 2.98331 3.00729 3.03916 3.06348 3.82392 3.84701 4.27094 4.51710 4.60993 4.70282 4.74246 5.00506 5.08265 5.26061 5.34527 5.35484 5.46294 5.48348 5.57892 5.68388 5.71031 5.80891 5.83676 5.86139 5.91992 6.00377 6.06972 6.20208 6.24023 6.28602 6.33350 6.39090 6.54679 6.85116 6.89296 6.96879 7.16556 7.18006 7.24393 7.49751 7.58950 7.69706 7.93987 7.97797 8.00985 8.18096 8.52106 8.60977 8.77365 8.85148 10.05805 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022200 B = 0.002248 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.985643 B =12451.152540 C =13003.769498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.074 4.074 3 H 0.081 0.919 4 C -0.120 4.120 5 C -0.036 4.036 6 C 0.097 3.903 7 N -0.294 5.294 8 N -0.485 5.485 9 H 0.438 0.562 10 C 0.070 3.930 11 C -0.212 4.212 12 C -0.026 4.026 13 H 0.093 0.907 14 C 0.516 3.484 15 O -0.543 6.543 16 N -0.718 5.718 17 C 0.185 3.815 18 C -0.243 4.243 19 C -0.069 4.069 20 C -0.229 4.229 21 C 0.117 3.883 22 C -0.460 4.460 23 H 0.079 0.921 24 C 0.076 3.924 25 N -0.786 5.786 26 Si 0.908 3.092 27 H -0.267 1.267 28 H -0.277 1.277 29 H -0.261 1.261 30 C -0.170 4.170 31 C -0.081 4.081 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.174 0.826 40 H 0.399 0.601 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.088 0.912 44 H 0.093 0.907 45 H 0.282 0.718 46 H 0.115 0.885 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.532 9.688 8.160 17.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.093 4.093 3 H 0.100 0.900 4 C -0.158 4.158 5 C -0.075 4.075 6 C -0.072 4.072 7 N -0.117 5.117 8 N -0.193 5.193 9 H 0.282 0.718 10 C -0.076 4.076 11 C -0.224 4.224 12 C -0.048 4.048 13 H 0.111 0.889 14 C 0.301 3.699 15 O -0.420 6.420 16 N -0.369 5.369 17 C 0.063 3.937 18 C -0.245 4.245 19 C -0.088 4.088 20 C -0.249 4.249 21 C 0.115 3.885 22 C -0.489 4.489 23 H 0.097 0.903 24 C -0.142 4.142 25 N -0.411 5.411 26 Si 0.732 3.268 27 H -0.192 1.192 28 H -0.203 1.203 29 H -0.185 1.185 30 C -0.189 4.189 31 C -0.100 4.100 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.192 0.808 40 H 0.233 0.767 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.106 0.894 44 H 0.111 0.889 45 H 0.093 0.907 46 H 0.133 0.867 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 14.062 8.688 8.892 18.769 hybrid contribution -1.071 0.254 -1.794 2.105 sum 12.991 8.942 7.098 17.295 Atomic orbital electron populations 1.21968 0.94203 1.02812 1.02295 1.21054 0.95973 0.99196 0.93064 0.90045 1.21739 0.93885 1.02779 0.97393 1.20107 0.94333 1.01846 0.91248 1.22275 0.90476 0.97954 0.96498 1.76965 1.18426 1.23570 0.92701 1.46229 1.08440 1.58410 1.06225 0.71838 1.22032 0.85534 1.00589 0.99433 1.19436 0.94922 1.15229 0.92802 1.19760 0.90204 0.94695 1.00163 0.88895 1.20469 0.80506 0.90172 0.78743 1.90653 1.64616 1.40205 1.46574 1.46610 1.26861 1.12937 1.50522 1.19902 0.92023 0.83544 0.98234 1.18982 0.93342 1.18456 0.93715 1.20395 0.92679 0.98663 0.97034 1.20966 0.96722 1.13372 0.93822 1.17661 0.92726 0.87206 0.90946 1.19652 1.02195 1.26028 1.01062 0.90252 1.25946 0.96175 0.93020 0.99105 1.69831 1.33504 1.13935 1.23824 0.86308 0.80951 0.79224 0.80270 1.19178 1.20260 1.18526 1.21258 0.91675 1.06686 0.99276 1.20541 0.97129 0.99493 0.92848 0.92148 0.92051 0.91930 0.89991 0.90897 0.90013 0.89986 0.80847 0.76690 0.92610 0.92590 0.89399 0.88927 0.90681 0.86687 0.89498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 8.40 37.16 0.31 -1.20 16 2 C -0.07 -0.73 2.44 -90.41 -0.22 -0.95 16 3 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 4 C -0.12 -1.24 5.14 -26.53 -0.14 -1.38 16 5 C -0.04 -0.37 6.31 -27.57 -0.17 -0.54 16 6 C 0.10 1.24 7.10 -82.34 -0.58 0.65 16 7 N -0.29 -3.91 12.68 33.75 0.43 -3.48 16 8 N -0.49 -5.14 7.37 30.35 0.22 -4.91 16 9 H 0.44 3.10 8.96 -182.43 -1.64 1.46 16 10 C 0.07 0.76 11.95 -17.37 -0.21 0.55 16 11 C -0.21 -2.62 4.64 -104.98 -0.49 -3.11 16 12 C -0.03 -0.29 2.67 -92.64 -0.25 -0.54 16 13 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 14 C 0.52 7.54 5.15 -10.99 -0.06 7.49 16 15 O -0.54 -10.03 15.13 5.56 0.08 -9.95 16 16 N -0.72 -10.50 4.93 -61.47 -0.30 -10.81 16 17 C 0.18 3.22 5.79 -5.19 -0.03 3.19 16 18 C -0.24 -4.84 5.27 -104.33 -0.55 -5.39 16 19 C -0.07 -1.42 9.67 -39.67 -0.38 -1.80 16 20 C -0.23 -5.27 9.80 -38.87 -0.38 -5.66 16 21 C 0.12 2.95 5.56 -106.82 -0.59 2.36 16 22 C -0.46 -11.63 9.04 -37.74 -0.34 -11.97 16 23 H 0.08 1.93 7.91 -52.49 -0.42 1.51 16 24 C 0.08 1.84 5.11 -17.34 -0.09 1.75 16 25 N -0.79 -19.54 11.07 55.55 0.61 -18.93 16 26 Si 0.91 17.83 29.60 -169.99 -5.03 12.80 16 27 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 28 H -0.28 -5.36 7.11 56.52 0.40 -4.95 16 29 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 30 C -0.17 -4.14 8.70 -38.88 -0.34 -4.48 16 31 C -0.08 -1.75 9.67 -39.66 -0.38 -2.14 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.74 7.01 -51.93 -0.36 0.37 16 35 H 0.08 1.10 6.35 -51.93 -0.33 0.77 16 36 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.17 1.38 8.06 -52.49 -0.42 0.96 16 40 H 0.40 5.29 8.46 -40.82 -0.35 4.95 16 41 H 0.06 1.02 8.08 -51.93 -0.42 0.60 16 42 H 0.06 1.00 8.08 -51.93 -0.42 0.58 16 43 H 0.09 1.62 8.06 -52.48 -0.42 1.19 16 44 H 0.09 2.02 8.06 -52.49 -0.42 1.60 16 45 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 46 H 0.12 2.92 6.25 -52.48 -0.33 2.59 16 47 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 LS Contribution 383.03 15.07 5.77 5.77 Total: -1.00 -30.22 383.03 -11.14 -41.36 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: -8.04 Total: 11.31 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: -4.89 Total: -23.17 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: 0.96 Total: -38.13 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.08 Total: -9.95 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.03 Total: 12.80 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.22 -11.14 -41.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880399708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.800 kcal (2) G-P(sol) polarization free energy of solvation -30.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds