Wall clock time and date at job start Sat Apr 11 2020 05:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35903 * 116.99922 * 2 1 4 4 C 1.38729 * 120.05120 * 179.97438 * 3 2 1 5 5 C 1.38144 * 119.94531 * 179.97438 * 4 3 2 6 6 C 1.38273 * 120.05335 * 0.02562 * 5 4 3 7 7 C 1.50696 * 119.94538 * 179.97438 * 6 5 4 8 8 C 1.53003 * 109.47102 * 89.99662 * 7 6 5 9 9 C 1.53000 * 109.47284 * 300.00157 * 8 7 6 10 10 C 1.53004 * 109.47115 * 60.00288 * 8 7 6 11 11 O 1.42901 * 109.47210 * 64.99589 * 10 8 7 12 12 N 1.46903 * 109.46899 * 179.97438 * 8 7 6 13 13 C 1.46898 * 110.99673 * 180.02562 * 12 8 7 14 14 C 1.53006 * 109.47006 * 180.02562 * 13 12 8 15 15 C 1.52997 * 109.47127 * 180.02562 * 14 13 12 16 16 S 1.81000 * 109.47293 * 179.97438 * 15 14 13 17 17 C 1.76202 * 100.00020 * 179.97438 * 16 15 14 18 18 H 1.07993 * 120.00485 * 359.97438 * 17 16 15 19 19 C 1.38806 * 119.99444 * 179.97438 * 17 16 15 20 20 N 1.31629 * 120.00213 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99465 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47037 * 90.00432 * 21 19 17 23 23 H 1.48503 * 109.46955 * 210.00195 * 21 19 17 24 24 H 1.48505 * 109.47558 * 330.00572 * 21 19 17 25 25 C 1.38262 * 120.10948 * 0.26773 * 6 5 4 26 26 C 1.38148 * 120.05515 * 359.45673 * 25 6 5 27 27 H 1.09002 * 109.47169 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46662 * 299.99767 * 1 2 3 29 29 H 1.08995 * 109.47048 * 59.99676 * 1 2 3 30 30 H 1.07998 * 120.03145 * 359.96192 * 4 3 2 31 31 H 1.07999 * 119.97874 * 179.97438 * 5 4 3 32 32 H 1.09002 * 109.47376 * 329.99636 * 7 6 5 33 33 H 1.08997 * 109.47453 * 210.00038 * 7 6 5 34 34 H 1.09002 * 109.46764 * 299.99763 * 9 8 7 35 35 H 1.08994 * 109.47051 * 59.99990 * 9 8 7 36 36 H 1.09004 * 109.46990 * 180.02562 * 9 8 7 37 37 H 1.08999 * 109.47192 * 184.99823 * 10 8 7 38 38 H 1.08997 * 109.46694 * 304.99784 * 10 8 7 39 39 H 0.96698 * 113.99735 * 180.02562 * 11 10 8 40 40 H 1.00897 * 110.99542 * 56.05200 * 12 8 7 41 41 H 1.09001 * 109.47392 * 60.00807 * 13 12 8 42 42 H 1.09001 * 109.47520 * 300.00529 * 13 12 8 43 43 H 1.09001 * 109.47002 * 299.99782 * 14 13 12 44 44 H 1.08993 * 109.46955 * 60.00219 * 14 13 12 45 45 H 1.09001 * 109.47289 * 299.99953 * 15 14 13 46 46 H 1.09004 * 109.47261 * 59.99697 * 15 14 13 47 47 H 0.97001 * 119.99673 * 179.97438 * 20 19 17 48 48 H 1.07999 * 119.97382 * 179.70450 * 25 6 5 49 49 H 1.08001 * 120.02776 * 180.27333 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0562 2.5168 0.0000 6 6 3.3020 3.6758 -0.0005 7 6 3.9862 5.0185 -0.0005 8 6 4.2184 5.4725 -1.4431 9 6 5.1002 4.4508 -2.1637 10 6 2.8741 5.5852 -2.1649 11 8 2.0955 6.6214 -1.5630 12 7 4.8848 6.7817 -1.4430 13 6 5.1238 7.2507 -2.8144 14 6 5.8183 8.6135 -2.7736 15 6 6.0667 9.1023 -4.2020 16 16 6.8874 10.7148 -4.1537 17 6 7.0475 11.0284 -5.8802 18 1 6.6813 10.3077 -6.5962 19 6 7.6443 12.2019 -6.3199 20 7 8.0912 13.0802 -5.4472 21 14 7.8147 12.5341 -8.1502 22 1 6.6117 13.2566 -8.6362 23 1 9.0221 13.3641 -8.3923 24 1 7.9455 11.2458 -8.8771 25 6 1.9212 3.6048 0.0051 26 6 1.2916 2.3751 -0.0001 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 4.0208 0.3799 0.0016 31 1 5.1346 2.5749 0.0008 32 1 4.9439 4.9383 0.5137 33 1 3.3580 5.7464 0.5129 34 1 6.0579 4.3706 -1.6494 35 1 4.6053 3.4797 -2.1637 36 1 5.2660 4.7746 -3.1913 37 1 3.0443 5.8221 -3.2152 38 1 2.3400 4.6382 -2.0880 39 1 1.2280 6.7488 -1.9708 40 1 5.7449 6.7496 -0.9164 41 1 4.1723 7.3431 -3.3380 42 1 5.7585 6.5354 -3.3377 43 1 5.1839 9.3290 -2.2503 44 1 6.7698 8.5208 -2.2503 45 1 6.7008 8.3870 -4.7257 46 1 5.1148 9.1950 -4.7250 47 1 8.5086 13.9001 -5.7545 48 1 1.3343 4.5114 0.0094 49 1 0.2130 2.3202 -0.0002 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933430112.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:48 Heat of formation + Delta-G solvation = -75.605111 kcal Electronic energy + Delta-G solvation = -26624.305558 eV Core-core repulsion = 22870.410503 eV Total energy + Delta-G solvation = -3753.895055 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.166 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.67805 -39.33603 -37.52745 -35.84980 -34.05146 -32.40465 -31.64999 -31.32001 -29.25847 -28.13336 -26.63242 -26.25043 -25.63939 -24.45973 -22.89020 -21.73131 -20.87278 -19.35206 -18.44469 -17.42922 -17.36592 -16.61977 -16.23160 -16.04470 -15.91674 -15.29372 -14.87148 -14.77866 -14.59256 -14.26745 -14.04294 -13.99657 -13.64122 -13.48207 -13.44421 -13.03405 -12.73943 -12.50991 -12.44029 -12.26580 -11.89530 -11.83859 -11.65693 -11.41087 -11.26467 -11.17559 -11.05194 -11.03439 -10.77204 -10.62557 -10.56317 -10.33965 -9.97518 -9.48565 -9.27408 -9.03086 -8.40063 -8.25452 -8.25391 -6.48573 -6.19856 -3.89526 1.01818 1.09607 2.89050 3.23176 3.23780 3.30529 3.39804 3.59703 3.99404 4.24039 4.26852 4.44013 4.52336 4.64846 4.70516 4.70983 4.77641 4.81889 5.01573 5.06162 5.10874 5.15903 5.19631 5.26426 5.29852 5.32384 5.39989 5.44988 5.47227 5.59897 5.61542 5.70607 5.76636 5.82660 5.89720 5.93194 5.98818 6.05011 6.08958 6.22676 6.39381 6.41466 6.46183 6.67950 6.81565 7.02590 7.13901 7.44108 7.62365 7.63170 8.39423 9.26276 10.88321 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.029863 B = 0.001687 C = 0.001678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.405751 B =16597.488441 C =16686.765950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.119 3.881 4 C -0.152 4.152 5 C -0.076 4.076 6 C -0.109 4.109 7 C -0.063 4.063 8 C 0.124 3.876 9 C -0.188 4.188 10 C 0.086 3.914 11 O -0.549 6.549 12 N -0.666 5.666 13 C 0.062 3.938 14 C -0.094 4.094 15 C -0.111 4.111 16 S -0.132 6.132 17 C -0.516 4.516 18 H 0.071 0.929 19 C 0.071 3.929 20 N -0.869 5.869 21 Si 0.918 3.082 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.273 1.273 25 C -0.072 4.072 26 C -0.209 4.209 27 H 0.099 0.901 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.042 0.958 38 H 0.048 0.952 39 H 0.370 0.630 40 H 0.339 0.661 41 H 0.070 0.930 42 H 0.028 0.972 43 H 0.074 0.926 44 H 0.062 0.938 45 H 0.056 0.944 46 H 0.059 0.941 47 H 0.267 0.733 48 H 0.129 0.871 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.902 -26.140 12.260 32.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.074 3.926 4 C -0.171 4.171 5 C -0.094 4.094 6 C -0.110 4.110 7 C -0.101 4.101 8 C 0.032 3.968 9 C -0.247 4.247 10 C 0.008 3.992 11 O -0.353 6.353 12 N -0.297 5.297 13 C -0.068 4.068 14 C -0.133 4.133 15 C -0.260 4.260 16 S 0.096 5.904 17 C -0.665 4.665 18 H 0.090 0.910 19 C -0.138 4.138 20 N -0.505 5.505 21 Si 0.744 3.256 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.197 1.197 25 C -0.090 4.090 26 C -0.228 4.228 27 H 0.117 0.883 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.146 0.854 31 H 0.146 0.854 32 H 0.088 0.912 33 H 0.108 0.892 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.215 0.785 40 H 0.157 0.843 41 H 0.089 0.911 42 H 0.046 0.954 43 H 0.093 0.907 44 H 0.080 0.920 45 H 0.075 0.925 46 H 0.077 0.923 47 H 0.077 0.923 48 H 0.147 0.853 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -14.452 -25.102 13.621 32.008 hybrid contribution -0.265 -1.078 -2.982 3.182 sum -14.716 -26.180 10.639 31.861 Atomic orbital electron populations 1.23045 0.78419 1.03892 1.01380 1.86063 1.21368 1.27125 1.88850 1.19042 0.92399 0.84098 0.97031 1.20411 0.91356 0.98651 1.06670 1.20922 0.99863 0.90977 0.97677 1.19770 0.93548 0.95096 1.02568 1.20497 1.00752 0.93035 0.95794 1.20804 0.92859 0.88401 0.94698 1.22620 1.00276 1.00267 1.01527 1.22253 0.91415 0.90175 0.95406 1.86622 1.31584 1.56532 1.60522 1.60512 1.29280 1.25149 1.14725 1.22076 0.99770 0.95957 0.88990 1.21222 1.00383 0.95485 0.96180 1.23217 1.02506 1.02159 0.98155 1.84637 1.76094 1.17196 1.12456 1.22701 1.45293 1.07851 0.90631 0.91041 1.25010 0.94788 0.95134 0.98862 1.70026 1.37471 1.09199 1.33813 0.86178 0.77845 0.78367 0.83198 1.20284 1.20759 1.19748 1.20950 0.94159 0.97057 0.96832 1.21238 0.99944 0.92387 1.09182 0.88294 0.92650 0.92658 0.85369 0.85386 0.91166 0.89248 0.91887 0.91562 0.91956 0.94030 0.93394 0.78507 0.84316 0.91115 0.95354 0.90711 0.91971 0.92493 0.92268 0.92339 0.85320 0.85649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.32 -2.77 10.50 -19.43 -0.20 -2.97 16 3 C 0.12 1.07 6.69 -39.22 -0.26 0.81 16 4 C -0.15 -1.32 9.99 -39.43 -0.39 -1.71 16 5 C -0.08 -0.63 7.87 -39.60 -0.31 -0.94 16 6 C -0.11 -0.95 4.01 -104.60 -0.42 -1.37 16 7 C -0.06 -0.58 4.61 -27.88 -0.13 -0.71 16 8 C 0.12 1.24 0.52 -131.60 -0.07 1.17 16 9 C -0.19 -1.73 7.64 37.16 0.28 -1.44 16 10 C 0.09 0.86 4.98 37.16 0.19 1.04 16 11 O -0.55 -5.81 12.96 -35.23 -0.46 -6.27 16 12 N -0.67 -8.04 5.85 -99.96 -0.59 -8.63 16 13 C 0.06 0.86 4.90 -3.82 -0.02 0.84 16 14 C -0.09 -1.59 5.48 -26.73 -0.15 -1.73 16 15 C -0.11 -2.30 5.67 37.16 0.21 -2.09 16 16 S -0.13 -3.53 21.44 -107.50 -2.30 -5.84 16 17 C -0.52 -15.06 9.50 30.94 0.29 -14.77 16 18 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 19 C 0.07 2.04 5.49 -17.43 -0.10 1.95 16 20 N -0.87 -26.29 13.22 55.49 0.73 -25.56 16 21 Si 0.92 21.77 29.55 -169.99 -5.02 16.74 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 25 C -0.07 -0.61 7.77 -39.61 -0.31 -0.91 16 26 C -0.21 -1.69 9.04 -39.43 -0.36 -2.05 16 27 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.23 7.66 -51.93 -0.40 -0.17 16 29 H 0.05 0.23 7.66 -51.93 -0.40 -0.17 16 30 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 31 H 0.13 0.86 8.02 -52.49 -0.42 0.44 16 32 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 33 H 0.09 0.95 7.76 -51.93 -0.40 0.54 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.58 6.17 -51.93 -0.32 0.25 16 36 H 0.06 0.63 6.40 -51.93 -0.33 0.29 16 37 H 0.04 0.44 6.68 -51.93 -0.35 0.09 16 38 H 0.05 0.43 5.85 -51.93 -0.30 0.13 16 39 H 0.37 2.47 9.12 45.56 0.42 2.89 16 40 H 0.34 3.81 8.72 -39.29 -0.34 3.47 16 41 H 0.07 1.01 6.42 -51.93 -0.33 0.68 16 42 H 0.03 0.38 6.30 -51.93 -0.33 0.05 16 43 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.06 1.16 8.14 -51.92 -0.42 0.74 16 46 H 0.06 1.22 8.14 -51.91 -0.42 0.80 16 47 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 48 H 0.13 1.02 8.04 -52.49 -0.42 0.59 16 49 H 0.13 0.77 6.30 -52.49 -0.33 0.44 16 LS Contribution 401.04 15.07 6.04 6.04 Total: -1.00 -33.74 401.04 -9.53 -43.26 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -7.19 Total: 4.00 kcal Atomic # 6 Polarization: -20.24 SS G_CDS: -0.54 Total: -20.78 kcal Atomic # 7 Polarization: -34.34 SS G_CDS: 0.15 Total: -34.19 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: -0.66 Total: -9.24 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: -3.53 SS G_CDS: -2.30 Total: -5.84 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.74 -9.53 -43.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933430112.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.340 kcal (2) G-P(sol) polarization free energy of solvation -33.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds