Wall clock time and date at job start Sat Apr 11 2020 05:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39632 * 120.48685 * 112.93035 * 3 2 1 5 5 N 1.31763 * 120.88055 * 180.02562 * 4 3 2 6 6 C 1.31728 * 122.03933 * 359.97438 * 5 4 3 7 7 C 1.39602 * 120.88091 * 0.02562 * 6 5 4 8 8 C 1.47855 * 120.49489 * 179.97438 * 7 6 5 9 9 O 1.21549 * 119.99889 * 45.60494 * 8 7 6 10 10 N 1.34773 * 119.99938 * 225.61365 * 8 7 6 11 11 C 1.43514 * 122.55195 * 355.71740 * 10 8 7 12 12 C 1.51715 * 114.25871 * 122.92591 * 11 10 8 13 13 C 1.51153 * 111.89296 * 82.64434 * 12 11 10 14 14 H 1.09003 * 110.23131 * 34.31523 * 13 12 11 15 15 C 1.53391 * 110.93493 * 156.74752 * 13 12 11 16 16 N 1.46604 * 108.10955 * 102.74338 * 15 13 12 17 17 C 1.36932 * 125.31717 * 178.64891 * 16 15 13 18 18 H 1.08005 * 120.00301 * 346.53667 * 17 16 15 19 19 C 1.38811 * 120.00368 * 166.53351 * 17 16 15 20 20 N 1.31622 * 119.99547 * 349.68502 * 19 17 16 21 21 Si 1.86793 * 120.00643 * 169.67798 * 19 17 16 22 22 H 1.48508 * 109.46981 * 94.96519 * 21 19 17 23 23 H 1.48498 * 109.47526 * 214.96994 * 21 19 17 24 24 H 1.48506 * 109.46989 * 334.97268 * 21 19 17 25 25 C 1.46656 * 109.36319 * 358.65017 * 16 15 13 26 26 C 1.54188 * 106.90260 * 18.25212 * 25 16 15 27 27 H 1.09006 * 111.45271 * 91.57816 * 26 25 16 28 28 C 1.51845 * 109.37205 * 214.09886 * 26 25 16 29 29 C 1.49544 * 122.55056 * 175.69154 * 10 8 7 30 30 C 1.39674 * 120.49215 * 293.20800 * 3 2 1 31 31 H 4.52733 * 13.92863 * 359.97438 * 4 2 1 32 32 H 1.08001 * 119.56375 * 359.97438 * 4 3 2 33 33 H 1.08003 * 119.56042 * 180.02562 * 6 5 4 34 34 H 1.09005 * 108.52063 * 244.15969 * 11 10 8 35 35 H 1.08991 * 108.52407 * 1.83840 * 11 10 8 36 36 H 1.09008 * 108.99926 * 203.26366 * 12 11 10 37 37 H 1.08996 * 108.99825 * 322.09881 * 12 11 10 38 38 H 1.09003 * 109.74197 * 222.41033 * 15 13 12 39 39 H 1.08997 * 109.74779 * 343.06679 * 15 13 12 40 40 H 0.96997 * 120.00045 * 179.97438 * 20 19 17 41 41 H 1.09007 * 109.96768 * 137.64973 * 25 16 15 42 42 H 1.09002 * 109.96511 * 258.86740 * 25 16 15 43 43 H 1.09000 * 109.00542 * 54.38542 * 28 26 25 44 44 H 1.08999 * 109.01076 * 295.52423 * 28 26 25 45 45 H 1.09001 * 110.26997 * 131.25909 * 29 10 8 46 46 H 1.08995 * 110.39094 * 9.22470 * 29 10 8 47 47 H 1.08007 * 120.92028 * 359.97438 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3142 0.4698 -1.1082 5 7 4.6318 0.4734 -1.1167 6 6 5.3384 0.0405 -0.0928 7 6 4.7117 -0.4457 1.0560 8 6 5.5133 -0.9300 2.2001 9 8 6.4616 -0.2808 2.5959 10 7 5.1926 -2.0914 2.8040 11 6 4.0337 -2.8562 2.4411 12 6 4.3347 -4.2825 2.0207 13 6 4.4842 -5.2015 3.2114 14 1 3.8095 -4.8952 4.0109 15 6 4.2134 -6.6587 2.8166 16 7 5.5031 -7.3453 2.6959 17 6 5.6694 -8.6682 2.3837 18 1 4.8254 -9.3413 2.4171 19 6 6.9229 -9.1443 2.0244 20 7 7.9039 -8.2998 1.7858 21 14 7.2174 -10.9831 1.8795 22 1 7.0431 -11.4025 0.4655 23 1 8.5988 -11.2997 2.3230 24 1 6.2443 -11.7092 2.7346 25 6 6.5871 -6.3941 2.9618 26 6 5.9606 -5.1963 3.7036 27 1 6.0051 -5.3293 4.7846 28 6 6.6751 -3.9206 3.2941 29 6 6.0175 -2.6816 3.9029 30 6 3.3149 -0.4733 1.1062 31 1 -1.0501 -0.0006 0.0002 32 1 2.7748 0.8337 -1.9702 33 1 6.4171 0.0621 -0.1426 34 1 3.3551 -2.8823 3.2937 35 1 3.5312 -2.3527 1.6153 36 1 3.5220 -4.6462 1.3917 37 1 5.2606 -4.2951 1.4458 38 1 3.6093 -7.1421 3.5844 39 1 3.6887 -6.6901 1.8617 40 1 8.7799 -8.6324 1.5350 41 1 7.3485 -6.8623 3.5857 42 1 7.0289 -6.0612 2.0226 43 1 6.6549 -3.8355 2.2076 44 1 7.7119 -3.9719 3.6266 45 1 5.3818 -2.9652 4.7417 46 1 6.7781 -1.9725 4.2295 47 1 2.7983 -0.8469 1.9780 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000946770721.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:05 Heat of formation + Delta-G solvation = 96.537486 kcal Electronic energy + Delta-G solvation = -29414.773619 eV Core-core repulsion = 25565.192027 eV Total energy + Delta-G solvation = -3849.581592 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.21723 -39.86394 -38.47573 -36.06282 -34.72951 -33.55417 -32.81917 -31.97296 -30.94495 -30.66346 -27.72162 -27.48141 -25.22184 -24.58812 -23.97921 -23.03162 -22.59238 -20.61551 -20.16871 -18.86439 -18.32759 -17.50965 -17.39746 -16.96266 -16.83339 -16.18979 -15.41140 -15.13973 -15.07290 -14.55735 -14.33606 -13.96442 -13.95050 -13.82432 -13.56361 -13.02122 -12.92266 -12.80095 -12.58218 -12.30137 -12.03961 -11.79868 -11.47550 -11.36076 -11.23759 -11.15081 -10.93161 -10.81087 -10.66798 -10.50393 -10.15151 -10.03322 -10.01490 -9.78968 -9.72705 -9.61115 -9.55601 -9.19875 -8.74460 -8.54474 -6.75757 -5.75627 -3.09711 0.22308 0.53303 2.24825 2.36305 2.63240 2.86581 3.38224 3.44330 3.46306 3.52597 3.69662 4.04535 4.27922 4.30357 4.40547 4.49173 4.71712 4.83643 4.95951 4.99120 5.05279 5.24059 5.27210 5.35616 5.46801 5.47735 5.51134 5.53192 5.57950 5.60390 5.71330 5.79791 5.93402 6.02882 6.10222 6.12949 6.26693 6.35060 6.39136 6.51676 6.58483 6.64774 6.75122 7.00331 7.04322 7.31035 7.45751 7.46484 7.64798 7.77973 7.91830 8.28016 9.20532 9.82599 10.49646 11.36800 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014879 B = 0.002792 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.393065 B =10026.528623 C =10566.134410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.155 4.155 3 C -0.045 4.045 4 C 0.143 3.857 5 N -0.479 5.479 6 C 0.161 3.839 7 C -0.172 4.172 8 C 0.571 3.429 9 O -0.530 6.530 10 N -0.598 5.598 11 C 0.093 3.907 12 C -0.128 4.128 13 C -0.090 4.090 14 H 0.066 0.934 15 C 0.141 3.859 16 N -0.599 5.599 17 C -0.233 4.233 18 H 0.074 0.926 19 C -0.005 4.005 20 N -0.915 5.915 21 Si 0.908 3.092 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.183 3.817 26 C -0.109 4.109 27 H 0.067 0.933 28 C -0.127 4.127 29 C 0.115 3.885 30 C -0.025 4.025 31 H 0.228 0.772 32 H 0.165 0.835 33 H 0.170 0.830 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.019 0.981 39 H 0.021 0.979 40 H 0.252 0.748 41 H 0.047 0.953 42 H 0.036 0.964 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.080 0.920 46 H 0.090 0.910 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.564 18.114 -0.355 22.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.155 4.155 3 C -0.047 4.047 4 C -0.015 4.015 5 N -0.186 5.186 6 C 0.004 3.996 7 C -0.177 4.177 8 C 0.358 3.642 9 O -0.408 6.408 10 N -0.330 5.330 11 C -0.031 4.031 12 C -0.166 4.166 13 C -0.109 4.109 14 H 0.085 0.915 15 C 0.015 3.985 16 N -0.325 5.325 17 C -0.362 4.362 18 H 0.092 0.908 19 C -0.202 4.202 20 N -0.561 5.561 21 Si 0.739 3.261 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.206 1.206 25 C 0.058 3.942 26 C -0.128 4.128 27 H 0.086 0.914 28 C -0.166 4.166 29 C -0.005 4.005 30 C -0.051 4.051 31 H 0.244 0.756 32 H 0.183 0.817 33 H 0.187 0.813 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.037 0.963 39 H 0.039 0.961 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.054 0.946 43 H 0.094 0.906 44 H 0.088 0.912 45 H 0.099 0.901 46 H 0.109 0.891 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -11.415 18.651 -0.955 21.887 hybrid contribution -0.530 -1.510 0.583 1.703 sum -11.946 17.140 -0.372 20.896 Atomic orbital electron populations 1.24954 0.95734 0.98368 0.98116 1.19560 0.91420 1.02155 1.02398 1.16792 0.88151 1.03519 0.96242 1.23168 0.89748 0.92344 0.96251 1.67812 1.07535 1.15468 1.27772 1.23045 1.01026 0.89117 0.86427 1.20911 0.94117 1.05004 0.97713 1.17863 0.83859 0.80573 0.81878 1.90806 1.29176 1.56140 1.64644 1.47946 1.27805 1.21008 1.36281 1.21212 0.87376 0.93502 1.00983 1.21486 1.03548 0.92635 0.98939 1.21749 0.97015 0.95758 0.96404 0.91546 1.21133 0.90154 0.89841 0.97327 1.44142 0.99736 1.06753 1.81863 1.18982 0.94938 0.82865 1.39378 0.90817 1.24859 0.96751 0.97874 1.00703 1.69974 1.02275 1.32209 1.51645 0.86164 0.77296 0.84963 0.77704 1.21604 1.21613 1.20593 1.21053 0.90202 0.86229 0.96732 1.22393 0.94388 0.96190 0.99839 0.91424 1.21877 0.99707 0.93035 1.01952 1.22365 0.94737 0.94996 0.88434 1.21926 0.92537 0.92846 0.97818 0.75567 0.81738 0.81284 0.91566 0.90227 0.90893 0.90300 0.96273 0.96114 0.93738 0.93488 0.94568 0.90586 0.91230 0.90138 0.89126 0.83330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 19.25 29.55 0.57 -0.43 16 2 C -0.15 -1.32 13.27 -38.83 -0.52 -1.84 16 3 C -0.04 -0.42 5.73 -106.91 -0.61 -1.04 16 4 C 0.14 1.34 10.91 -17.06 -0.19 1.15 16 5 N -0.48 -5.33 10.33 -12.59 -0.13 -5.46 16 6 C 0.16 1.83 10.85 -17.09 -0.19 1.64 16 7 C -0.17 -1.96 5.27 -104.87 -0.55 -2.51 16 8 C 0.57 7.60 7.37 -12.33 -0.09 7.51 16 9 O -0.53 -8.63 16.68 5.32 0.09 -8.54 16 10 N -0.60 -7.34 2.61 -175.43 -0.46 -7.80 16 11 C 0.09 1.01 4.82 -6.27 -0.03 0.98 16 12 C -0.13 -1.75 4.77 -28.31 -0.14 -1.89 16 13 C -0.09 -1.41 2.78 -89.95 -0.25 -1.66 16 14 H 0.07 0.89 7.68 -51.93 -0.40 0.49 16 15 C 0.14 2.82 6.82 -3.78 -0.03 2.80 16 16 N -0.60 -14.98 3.37 -172.05 -0.58 -15.56 16 17 C -0.23 -6.46 10.19 -15.06 -0.15 -6.61 16 18 H 0.07 1.99 7.85 -52.48 -0.41 1.58 16 19 C 0.00 -0.13 5.38 -17.43 -0.09 -0.23 16 20 N -0.91 -26.73 10.78 55.49 0.60 -26.13 16 21 Si 0.91 21.97 29.57 -169.99 -5.03 16.94 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 C 0.18 4.26 4.84 -3.34 -0.02 4.24 16 26 C -0.11 -1.85 2.93 -89.18 -0.26 -2.11 16 27 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 28 C -0.13 -1.90 4.50 -27.36 -0.12 -2.02 16 29 C 0.12 1.44 6.17 -2.39 -0.01 1.42 16 30 C -0.03 -0.25 7.29 -38.46 -0.28 -0.53 16 31 H 0.23 0.59 7.80 -54.09 -0.42 0.17 16 32 H 0.17 1.11 8.06 -52.49 -0.42 0.68 16 33 H 0.17 1.77 8.06 -52.48 -0.42 1.35 16 34 H 0.07 0.62 7.68 -51.93 -0.40 0.23 16 35 H 0.08 0.78 3.97 -51.93 -0.21 0.58 16 36 H 0.07 0.96 7.53 -51.92 -0.39 0.57 16 37 H 0.08 1.28 5.86 -51.93 -0.30 0.98 16 38 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.02 0.42 7.40 -51.93 -0.38 0.04 16 40 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.05 1.23 7.49 -51.93 -0.39 0.84 16 42 H 0.04 0.94 7.24 -51.93 -0.38 0.57 16 43 H 0.08 1.25 5.47 -51.93 -0.28 0.97 16 44 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.08 0.89 7.81 -51.93 -0.41 0.48 16 46 H 0.09 1.16 7.31 -51.93 -0.38 0.78 16 47 H 0.15 1.21 6.62 -52.48 -0.35 0.86 16 LS Contribution 374.38 15.07 5.64 5.64 Total: -1.00 -33.03 374.38 -9.17 -42.20 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -6.35 Total: -0.18 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -2.96 Total: -1.12 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: -0.57 Total: -54.95 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: 0.09 Total: -8.54 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.03 -9.17 -42.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946770721.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.737 kcal (2) G-P(sol) polarization free energy of solvation -33.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds